FFCP PHASE1:Hg19::chr1:209741162..209741173,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:209741162..209741173,- to FFCP PHASE1:Hg19::chr1:209741162..209741173,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene= | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_ncRNA | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-144bp_to_ENST00000424696_5end | |||
|cluster_id=chr1:209741162..209741173,- | |||
|coexpression_cluster_id=C458 | |||
|description=CAGE_peak_2_at_ENST00000424696_5end | |||
|id=chr1:209741162..209741173,- | |||
|ontology_enrichment_celltype=CL:0002251!9.35e-23!21;CL:0002076!6.23e-17!43;CL:0000223!1.32e-12!59;CL:0000066!1.38e-12!254;CL:0002623!6.21e-11!3;CL:0002166!1.47e-10!3;CL:0002621!2.21e-10!3;CL:0002159!4.42e-08!13;CL:0002327!8.97e-08!4;CL:0000076!2.23e-07!62;CL:0002536!4.06e-07!2 | |||
|ontology_enrichment_celltype_v019=CL:0002251;5.88e-34;20!CL:0002623;2.49e-27;3!CL:0000622;1.18e-16;5!CL:0002076;1.76e-16;42!CL:0000154;5.62e-14;6!CL:0002166;1.37e-12;3!CL:0002621;1.37e-12;3!CL:0002336;6.91e-10;1!CL:0002261;6.91e-10;1!CL:0002170;6.91e-10;1!CL:0002327;9.84e-10;4!CL:0000150;1.72e-09;9 | |||
|ontology_enrichment_celltype_v019_2=CL:0002251,8.38e-34,20;CL:0002623,2.09e-27,3;CL:0002076,4.62e-19,42;CL:0000622,1.06e-16,5;CL:0000154,5.15e-14,6;CL:0000223,2.18e-13,58;CL:0002166,1.12e-12,3;CL:0002621,2.00e-12,3;CL:0002336,9.82e-10,1;CL:0002261,9.82e-10,1;CL:0002170,9.82e-10,1;CL:0002327,9.85e-10,4;CL:0000150,1.62e-09,9;CL:0000066,3.22e-09,253 | |||
|ontology_enrichment_development_v019=UBERON:0004874;2.97e-10;1!UBERON:0009143;6.91e-10;1 | |||
|ontology_enrichment_disease=DOID:1749!9.92e-20!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000166!3.26e-19!21;UBERON:0000161!1.40e-16!35;UBERON:0000165!3.22e-16!28;UBERON:0000930!3.22e-16!28;UBERON:0003729!1.35e-15!5;UBERON:0000974!4.53e-14!10;UBERON:0003343!9.86e-13!4;UBERON:0004785!9.86e-13!4;UBERON:0000344!1.62e-11!12;UBERON:0001949!2.21e-10!3;UBERON:0001444!1.23e-09!48;UBERON:0003102!5.81e-09!95;UBERON:0001004!3.62e-08!72;UBERON:0001708!5.27e-08!4;UBERON:0001704!5.27e-08!4;UBERON:0001911!8.97e-08!4;UBERON:0005333!8.97e-08!4;UBERON:0008425!8.97e-08!4;UBERON:0005311!8.97e-08!4;UBERON:0000341!2.98e-07!2;UBERON:0004119!5.49e-07!169;UBERON:0000925!5.49e-07!169;UBERON:0006595!5.49e-07!169 | |||
|ontology_enrichment_uberon_v019=UBERON:0000161;6.55e-22;19!UBERON:0000166;6.55e-22;19!UBERON:0000165;5.68e-19;28!UBERON:0003729;1.46e-16;13!UBERON:0001044;5.62e-14;6!UBERON:0003293;5.62e-14;6!UBERON:0003294;5.62e-14;6!UBERON:0010047;5.62e-14;6!UBERON:0003408;5.62e-14;6!UBERON:0000167;5.62e-14;6!UBERON:0000974;9.48e-14;6!UBERON:0001949;1.37e-12;3!UBERON:0000344;1.00e-10;20!UBERON:0001041;2.66e-10;14!UBERON:0000989;2.97e-10;1!UBERON:0008811;2.97e-10;1!UBERON:0001911;9.84e-10;4!UBERON:0003343;1.15e-09;4!UBERON:0001708;1.15e-09;4!UBERON:0004785;1.15e-09;4!UBERON:0008895;1.15e-09;4!UBERON:0007811;3.06e-09;52!UBERON:0001555;1.83e-08;54!UBERON:0000033;3.47e-08;50!UBERON:0000153;4.11e-08;54!UBERON:0011159;6.65e-08;5!UBERON:0001444;9.48e-08;48!UBERON:0002365;9.03e-07;31!UBERON:0002330;9.03e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,8.82e-19,22;UBERON:0000165,3.35e-18,29;UBERON:0000930,3.35e-18,29;UBERON:0000153,3.41e-18,62;UBERON:0007811,3.41e-18,62;UBERON:0000033,5.79e-17,56;UBERON:0003729,2.02e-16,13;UBERON:0001044,5.15e-14,6;UBERON:0003293,5.15e-14,6;UBERON:0003294,5.15e-14,6;UBERON:0010047,5.15e-14,6;UBERON:0000167,5.15e-14,6;UBERON:0001444,4.89e-13,49;UBERON:0001949,2.00e-12,3;UBERON:0000161,3.40e-11,36;UBERON:0000344,1.23e-10,20;UBERON:0000989,2.59e-10,1;UBERON:0008811,2.59e-10,1;UBERON:0006258,2.59e-10,1;UBERON:0005876,2.59e-10,1;UBERON:0004874,2.59e-10,1;UBERON:0001911,9.85e-10,4;UBERON:0001708,9.85e-10,4;UBERON:0008895,9.85e-10,4;UBERON:0005333,9.85e-10,4;UBERON:0008425,9.85e-10,4;UBERON:0005311,9.85e-10,4;UBERON:0003343,1.12e-09,4;UBERON:0004785,1.12e-09,4;UBERON:0003102,7.86e-09,99;UBERON:0003408,1.30e-08,10;UBERON:0000974,1.72e-08,10;UBERON:0011159,5.89e-08,5;UBERON:0002365,5.19e-07,31;UBERON:0002330,5.19e-07,31;UBERON:0010188,9.15e-07,6;UBERON:0002539,9.15e-07,6;UBERON:0008816,9.15e-07,6 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,1.15956511897978,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.301586917234893,1.20364978706088,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,2.01578553838631,0.992425680696705,4.11969204433102,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.828728900423067,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53135254993501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,5.29810228258692,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.522355239482415,0,0,0,0,0,1.84279131327997,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0.353909170043221,1.65085738669511,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48105589194647,0.175871244359621,1.53314913167514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.863710364874486,0,0,0,0,0,0,1.65772931330429,9.73095319435515,8.98637560358319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,2.55880778281177,0.23806443146374,0,0.124149428591716,0,0,0,0.870866991587845,0,0.202056159043763,0.143444410785353,0,0.244209805832924,0,0,0,0,0,0.813792356631477,0,0,0 | |phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,0,0.218441372130172,1.84636884759917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.11235332835329,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355009592516614,0,0,1.15956511897978,2.18196896472668,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.219500570817251,0,0.301586917234893,1.20364978706088,0,0,0,0,0,0,0,0,0,0,0,0,0,1.87467667973554,2.01578553838631,0.992425680696705,4.11969204433102,0.290633938513962,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.716243852959582,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.66435439510497,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802025881213139,0.828728900423067,0,0,0,0,0,0.784349769176855,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.53135254993501,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.288666338176536,0,0,0,0,0,0,0.459446800413919,0,0,0,0,0,0,0,0,0,0,2.45040215981032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.568967241427498,0,0,0,0,0,0,0,0,0,0,0,0,5.29810228258692,0.769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0.19566461893209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195984794828755,0.522355239482415,0,0,0,0,0,1.84279131327997,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0.471388069233591,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.335434687599266,0,0,0,0,0.383830394638891,0,0,0,0,0,0,0,0,0.170388021785422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.124980407962107,0,0,0,0,0,0,0,0,0.189403005275089,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0.353378291891762,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.24415452006595,0,0,0,0,0,0.212574920101683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.35554524402461,0.353909170043221,1.65085738669511,0.231051332300676,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.48105589194647,0.175871244359621,1.53314913167514,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.863710364874486,0,0,0,0,0,0,1.65772931330429,9.73095319435515,8.98637560358319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178553938605658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,2.55880778281177,0.23806443146374,0,0.124149428591716,0,0,0,0.870866991587845,0,0.202056159043763,0.143444410785353,0,0.244209805832924,0,0,0,0,0,0.813792356631477,0,0,0 | ||
|short_description=p2@ENST00000424696 | |||
}} | }} |
Latest revision as of 03:19, 28 July 2015
Short description: | p2@ENST00000424696 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_ENST00000424696_5end |
Coexpression cluster: | C458_salivary_parietal_middle_locus_medial_occipital_globus |
Association with transcript: | -144bp_to_ENST00000424696_5end |
EntrezGene: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell of alimentary canal | 8.38e-34 | 20 |
acinar cell of salivary gland | 2.09e-27 | 3 |
endo-epithelial cell | 4.62e-19 | 42 |
acinar cell | 1.06e-16 | 5 |
protein secreting cell | 5.15e-14 | 6 |
endodermal cell | 2.18e-13 | 58 |
epithelial cell of Malassez | 1.12e-12 | 3 |
gingival epithelial cell | 2.00e-12 | 3 |
buccal mucosa cell | 9.82e-10 | 1 |
endothelial cell of viscerocranial mucosa | 9.82e-10 | 1 |
keratinized cell of the oral mucosa | 9.82e-10 | 1 |
mammary gland epithelial cell | 9.85e-10 | 4 |
glandular epithelial cell | 1.62e-09 | 9 |
epithelial cell | 3.22e-09 | 253 |
Ontology term | p-value | n |
---|---|---|
oral opening | 8.82e-19 | 22 |
mouth | 3.35e-18 | 29 |
stomodeum | 3.35e-18 | 29 |
anterior region of body | 3.41e-18 | 62 |
craniocervical region | 3.41e-18 | 62 |
head | 5.79e-17 | 56 |
mouth mucosa | 2.02e-16 | 13 |
saliva-secreting gland | 5.15e-14 | 6 |
gland of oral region | 5.15e-14 | 6 |
gland of foregut | 5.15e-14 | 6 |
oral gland | 5.15e-14 | 6 |
oral cavity | 5.15e-14 | 6 |
subdivision of head | 4.89e-13 | 49 |
gingival epithelium | 2.00e-12 | 3 |
orifice | 3.40e-11 | 36 |
mucosa | 1.23e-10 | 20 |
penis | 2.59e-10 | 1 |
intromittent organ | 2.59e-10 | 1 |
lateral plate mesenchyme | 2.59e-10 | 1 |
undifferentiated genital tubercle | 2.59e-10 | 1 |
somatopleure | 2.59e-10 | 1 |
mammary gland | 9.85e-10 | 4 |
jaw skeleton | 9.85e-10 | 4 |
splanchnocranium | 9.85e-10 | 4 |
mammary bud | 9.85e-10 | 4 |
mammary ridge | 9.85e-10 | 4 |
mammary placode | 9.85e-10 | 4 |
mucosa of oral region | 1.12e-09 | 4 |
respiratory system mucosa | 1.12e-09 | 4 |
surface structure | 7.86e-09 | 99 |
gland of gut | 1.30e-08 | 10 |
neck | 1.72e-08 | 10 |
primary subdivision of cranial skeletal system | 5.89e-08 | 5 |
exocrine gland | 5.19e-07 | 31 |
exocrine system | 5.19e-07 | 31 |
protuberance | 9.15e-07 | 6 |
pharyngeal arch | 9.15e-07 | 6 |
embryonic head | 9.15e-07 | 6 |