FFCP PHASE1:Hg19::chr22:30602042..30602074,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr22:30602042..30602074,+
|short_description=p@chr22:30602042..30602074,+
|description=CAGE_peak_at_chr22:30602042..30602074,+
|association_with_transcript=NA
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr22:30602042..30602074,+ | |||
|coexpression_cluster_id=C575 | |||
|description=CAGE_peak_at_chr22:30602042..30602074,+ | |||
|id=chr22:30602042..30602074,+ | |||
|ontology_enrichment_celltype=CL:0002057!3.46e-18!42;CL:0000860!2.74e-16!45;CL:0000766!1.05e-13!76;CL:0002194!3.16e-10!63;CL:0000576!3.16e-10!63;CL:0000040!3.16e-10!63;CL:0000559!3.16e-10!63;CL:0000839!8.77e-10!70;CL:0002009!1.24e-09!65;CL:0000557!1.64e-09!71;CL:0000048!3.49e-08!430;CL:0000723!5.33e-08!436;CL:0000034!2.38e-07!444;CL:0000680!2.87e-07!57;CL:0000056!2.87e-07!57;CL:0000355!2.87e-07!57 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.25e-48;33!CL:0002057;8.25e-48;33!CL:0000473;4.17e-34;39!CL:0000234;4.17e-34;39!CL:0000576;5.68e-19;48!CL:0000766;2.80e-15;69!CL:0000771;5.51e-14;2!CL:0000763;1.11e-09;100!CL:0000094;1.06e-07;8!CL:0002087;2.15e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.15e-40,42;CL:0002057,2.15e-40,42;CL:0000473,6.57e-35,48;CL:0000234,6.57e-35,48;CL:0000766,7.20e-31,72;CL:0002194,3.17e-27,59;CL:0000576,3.17e-27,59;CL:0000040,3.17e-27,59;CL:0000559,3.17e-27,59;CL:0002009,3.10e-26,61;CL:0000839,5.15e-24,66;CL:0000557,1.31e-23,67;CL:0000763,2.58e-19,108;CL:0000049,2.58e-19,108;CL:0000738,1.59e-14,136;CL:0000771,4.26e-14,2;CL:0002087,2.17e-12,115;CL:0002031,9.84e-12,120;CL:0002032,1.19e-11,161;CL:0000837,1.19e-11,161;CL:0000988,1.81e-11,177;CL:0000037,5.35e-11,168;CL:0000094,9.47e-08,8 | |||
|ontology_enrichment_development_v019=CL:0002057;7.04e-31;42!UBERON:0000358;9.12e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.15e-11!167;UBERON:0002371!2.05e-07!80;UBERON:0001474!2.33e-07!86;UBERON:0004765!5.85e-07!101;UBERON:0001434!5.85e-07!101;UBERON:0000926!9.87e-07!448;UBERON:0004120!9.87e-07!448;UBERON:0006603!9.87e-07!448 | |||
|ontology_enrichment_uberon_v019=UBERON:0002134;9.12e-08;1!UBERON:0005208;9.12e-08;1!UBERON:0004145;9.12e-08;1!UBERON:0005946;9.12e-08;1!UBERON:0005965;9.12e-08;1!UBERON:0002078;9.12e-08;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.94e-20,76;UBERON:0001474,1.05e-18,82;UBERON:0004765,9.39e-17,90;UBERON:0002405,4.16e-16,93;UBERON:0002390,4.07e-15,98;UBERON:0003061,4.07e-15,98;UBERON:0001434,9.52e-15,100;UBERON:0002193,2.08e-13,108;UBERON:0003081,1.49e-10,203;UBERON:0002204,1.49e-08,167;UBERON:0002134,1.01e-07,1;UBERON:0005208,1.01e-07,1;UBERON:0005946,1.01e-07,1;UBERON:0005965,1.01e-07,1;UBERON:0002078,1.01e-07,1 | |||
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| ||
|short_description=p@chr22:30602042..30602074,+ | |||
}} | }} |
Latest revision as of 20:03, 28 July 2015
Short description: | p@chr22:30602042..30602074, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr22:30602042..30602074, + |
Coexpression cluster: | C575_embryonic_CD14_CD34_immature_chorionic_Mast_testis |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.15e-40 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.15e-40 | 42 |
defensive cell | 6.57e-35 | 48 |
phagocyte | 6.57e-35 | 48 |
myeloid leukocyte | 7.20e-31 | 72 |
monopoietic cell | 3.17e-27 | 59 |
monocyte | 3.17e-27 | 59 |
monoblast | 3.17e-27 | 59 |
promonocyte | 3.17e-27 | 59 |
macrophage dendritic cell progenitor | 3.10e-26 | 61 |
myeloid lineage restricted progenitor cell | 5.15e-24 | 66 |
granulocyte monocyte progenitor cell | 1.31e-23 | 67 |
myeloid cell | 2.58e-19 | 108 |
common myeloid progenitor | 2.58e-19 | 108 |
leukocyte | 1.59e-14 | 136 |
eosinophil | 4.26e-14 | 2 |
nongranular leukocyte | 2.17e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 9.84e-12 | 120 |
hematopoietic oligopotent progenitor cell | 1.19e-11 | 161 |
hematopoietic multipotent progenitor cell | 1.19e-11 | 161 |
hematopoietic cell | 1.81e-11 | 177 |
hematopoietic stem cell | 5.35e-11 | 168 |
granulocyte | 9.47e-08 | 8 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.94e-20 | 76 |
bone element | 1.05e-18 | 82 |
skeletal element | 9.39e-17 | 90 |
immune system | 4.16e-16 | 93 |
hematopoietic system | 4.07e-15 | 98 |
blood island | 4.07e-15 | 98 |
skeletal system | 9.52e-15 | 100 |
hemolymphoid system | 2.08e-13 | 108 |
lateral plate mesoderm | 1.49e-10 | 203 |
musculoskeletal system | 1.49e-08 | 167 |
tricuspid valve | 1.01e-07 | 1 |
right atrium valve | 1.01e-07 | 1 |
outflow tract of atrium | 1.01e-07 | 1 |
outflow part of right atrium | 1.01e-07 | 1 |
right cardiac atrium | 1.01e-07 | 1 |