FFCP PHASE1:Hg19::chr2:218771579..218771610,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr2:218771579..218771610,- to FFCP PHASE1:Hg19::chr2:218771579..218771610,-: NSchange) |
No edit summary |
||
(11 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr2:218771579..218771610,- | |||
|coexpression_cluster_id=C2667 | |||
|description=CAGE_peak_at_chr2:218771579..218771610,- | |||
|id=chr2:218771579..218771610,- | |||
|ontology_enrichment_celltype=CL:0000766!2.59e-48!76;CL:0000839!6.19e-46!70;CL:0002194!3.41e-45!63;CL:0000576!3.41e-45!63;CL:0000040!3.41e-45!63;CL:0000559!3.41e-45!63;CL:0000557!4.17e-45!71;CL:0002009!1.97e-43!65;CL:0002057!1.70e-42!42;CL:0000860!5.49e-39!45;CL:0000763!2.26e-28!112;CL:0000049!2.26e-28!112;CL:0000738!4.14e-21!140;CL:0002031!2.22e-20!124;CL:0002087!2.01e-19!119;CL:0002032!4.84e-15!165;CL:0000837!4.84e-15!165;CL:0000037!9.68e-15!172;CL:0000566!9.68e-15!172;CL:0000988!3.10e-13!182;CL:0002619!3.90e-08!3;CL:0000235!1.31e-07!10;CL:0000767!3.63e-07!3 | |||
|ontology_enrichment_celltype_v019=CL:0000473;9.60e-77;39!CL:0000234;9.60e-77;39!CL:0000860;3.84e-67;33!CL:0002057;3.84e-67;33!CL:0000576;5.50e-40;48!CL:0000766;1.36e-35;69!CL:0000235;1.04e-27;6!CL:0000763;1.52e-18;100!CL:0002619;4.73e-16;3!CL:0000767;4.70e-14;3!CL:0002087;2.92e-11;104!CL:0000738;4.21e-09;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,2.44e-77,48;CL:0000234,2.44e-77,48;CL:0002194,2.75e-75,59;CL:0000576,2.75e-75,59;CL:0000040,2.75e-75,59;CL:0000559,2.75e-75,59;CL:0000766,5.40e-73,72;CL:0002009,1.24e-72,61;CL:0000839,1.08e-66,66;CL:0000557,1.31e-65,67;CL:0000860,2.60e-55,42;CL:0002057,2.60e-55,42;CL:0000763,1.81e-46,108;CL:0000049,1.81e-46,108;CL:0002087,1.47e-35,115;CL:0000738,1.83e-35,136;CL:0002031,8.50e-34,120;CL:0002032,7.59e-29,161;CL:0000837,7.59e-29,161;CL:0000235,1.74e-27,6;CL:0000037,2.42e-27,168;CL:0000988,1.39e-25,177;CL:0002619,4.85e-16,3;CL:0000767,6.49e-14,3;CL:0000134,9.36e-11,354;CL:0002320,2.14e-10,361;CL:0000219,3.91e-09,386;CL:0000048,1.36e-07,427;CL:0000723,2.22e-07,433;CL:0000034,4.18e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.75e-41;42!CL:0000049;7.07e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.41e-38!80;UBERON:0001474!9.33e-37!86;UBERON:0002390!1.51e-33!102;UBERON:0003061!1.51e-33!102;UBERON:0002193!1.03e-30!112;UBERON:0004765!2.37e-29!101;UBERON:0001434!2.37e-29!101;UBERON:0002405!1.05e-26!115;UBERON:0007023!2.09e-16!115;UBERON:0003081!1.50e-15!216;UBERON:0002204!1.81e-14!167;UBERON:0000062!1.03e-08!511;UBERON:0000926!1.04e-07!448;UBERON:0004120!1.04e-07!448;UBERON:0006603!1.04e-07!448;UBERON:0003978!5.16e-07!3;UBERON:0009751!5.16e-07!3;UBERON:0000946!5.16e-07!3;UBERON:0002523!5.16e-07!3;UBERON:0005983!5.16e-07!3;UBERON:0002165!5.16e-07!3;UBERON:0002062!5.16e-07!3;UBERON:0007280!5.16e-07!3 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.99e-57,76;UBERON:0001474,1.73e-52,82;UBERON:0004765,2.94e-47,90;UBERON:0002405,1.58e-45,93;UBERON:0002390,7.15e-43,98;UBERON:0003061,7.15e-43,98;UBERON:0001434,6.96e-42,100;UBERON:0002193,2.71e-38,108;UBERON:0002204,2.29e-22,167;UBERON:0003081,5.84e-20,203;UBERON:0002384,9.64e-11,371;UBERON:0000926,2.78e-10,315;UBERON:0004120,2.78e-10,315;UBERON:0006603,2.78e-10,315 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,1.15148819429164,1.39334510984468,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,9.1805344438369,9.39291631455041,10.0454471377333,8.86929256555345,5.29026321164333,8.73302620276138,5.57829688573643,4.11167888021826,4.02618282163635,0,1.5369642391746,0.236482229888585,2.75796544589295,1.93645405075148,1.35426486594342,7.9061782607894,6.00393530127261,6.06753408001728,10.1007684482398,6.09765151444578,7.03270838378945,0.329851300186716,0.797854630486527,2.13112375266347,2.03146467040009,0,2.4912889959823,0.75374599577023,0.521482918420201,1.3031330682307,2.42159801053347,3.31449872388808,2.53169909952708,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41677413392274,1.17002132569619,3.26988557035202,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,3.01354254859276,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,1.3749625440701,0.717873024576814,0,0,0.669514372325618,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,1.49502377594773,0.943225830597996,1.65695622138878,0,0,0,0,0.544017803369474,1.2534494701135,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0.297046400327086,0,0,0.187967835959707,0,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,1.27940389140589,0,0,0.0620747142958579,0,0.0636471582781649,0.404234377916439,0.435433495793923,0,0.0673520530145875,0.573777643141411,0,0,0,0,0,0,0.611207220914332,0,0.665756774185513,1.61019034872821,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,1.15148819429164,1.39334510984468,0,0,0,0,0,0,0,0.200544447470142,0.434021741431704,9.1805344438369,9.39291631455041,10.0454471377333,8.86929256555345,5.29026321164333,8.73302620276138,5.57829688573643,4.11167888021826,4.02618282163635,0,1.5369642391746,0.236482229888585,2.75796544589295,1.93645405075148,1.35426486594342,7.9061782607894,6.00393530127261,6.06753408001728,10.1007684482398,6.09765151444578,7.03270838378945,0.329851300186716,0.797854630486527,2.13112375266347,2.03146467040009,0,2.4912889959823,0.75374599577023,0.521482918420201,1.3031330682307,2.42159801053347,3.31449872388808,2.53169909952708,0,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.523916301990851,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.41677413392274,1.17002132569619,3.26988557035202,0,0,0,0,0,0,0,0,0.414656231081544,0.144119953416961,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.2162378064119,3.01354254859276,2.10833939483032,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.376575203107117,0,0,0,0,0,0,0,0,0,0,0.540031437238115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0,0,0,0,0.307160702099232,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.591860433821602,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0.638002319463839,0,1.06606955203727,0,0,0,0,0,0,0,0,0,0,0,0,0,0.265372693510018,0,0,0,0,0.134802265961354,0,0,0,0,0,0,0,0,0.252746318513952,0,0,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0.193978032976839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.837847203816763,1.3749625440701,0.717873024576814,0,0,0.669514372325618,0.0671834724867263,0,0,0,0,0,0,0,0,0.136203406111576,0,0,0,0,0,0,0,0,0,0,0,0,0.714695326373367,0,0,0,0,0,0,0,0,0,0,0,0,0.13223260174269,0,0,1.49502377594773,0.943225830597996,1.65695622138878,0,0,0,0,0.544017803369474,1.2534494701135,0.612691153526923,0.327872630709804,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.198916222116275,0.150420656698515,0,0,0,0,0,0,0,0,0.0634158101939068,0,0.548257766857182,0,0,0,0,0.336283722218824,0,0,0,0,0,0,0,0,0,0.078493092850514,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.307988420568741,0,0,0,0,0,0,0,0,0.308696632431779,0,0,0,0,0,0.297046400327086,0,0,0.187967835959707,0,0,0,0,0,0,0.917458566809082,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.151557396436479,0,0,0,1.27940389140589,0,0,0.0620747142958579,0,0.0636471582781649,0.404234377916439,0.435433495793923,0,0.0673520530145875,0.573777643141411,0,0,0,0,0,0,0.611207220914332,0,0.665756774185513,1.61019034872821,0 | ||
|short_description=p@chr2:218771579..218771610,- | |||
}} | }} |
Latest revision as of 06:32, 29 July 2015
Short description: | p@chr2:218771579..218771610, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:218771579..218771610, - |
Coexpression cluster: | C2667_CD14_acute_Macrophage_immature_Monocytederived_Mast_trachea |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 2.44e-77 | 48 |
phagocyte | 2.44e-77 | 48 |
monopoietic cell | 2.75e-75 | 59 |
monocyte | 2.75e-75 | 59 |
monoblast | 2.75e-75 | 59 |
promonocyte | 2.75e-75 | 59 |
myeloid leukocyte | 5.40e-73 | 72 |
macrophage dendritic cell progenitor | 1.24e-72 | 61 |
myeloid lineage restricted progenitor cell | 1.08e-66 | 66 |
granulocyte monocyte progenitor cell | 1.31e-65 | 67 |
classical monocyte | 2.60e-55 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.60e-55 | 42 |
myeloid cell | 1.81e-46 | 108 |
common myeloid progenitor | 1.81e-46 | 108 |
nongranular leukocyte | 1.47e-35 | 115 |
leukocyte | 1.83e-35 | 136 |
hematopoietic lineage restricted progenitor cell | 8.50e-34 | 120 |
hematopoietic oligopotent progenitor cell | 7.59e-29 | 161 |
hematopoietic multipotent progenitor cell | 7.59e-29 | 161 |
macrophage | 1.74e-27 | 6 |
hematopoietic stem cell | 2.42e-27 | 168 |
hematopoietic cell | 1.39e-25 | 177 |
adult endothelial progenitor cell | 4.85e-16 | 3 |
basophil | 6.49e-14 | 3 |
mesenchymal cell | 9.36e-11 | 354 |
connective tissue cell | 2.14e-10 | 361 |
motile cell | 3.91e-09 | 386 |
multi fate stem cell | 1.36e-07 | 427 |
somatic stem cell | 2.22e-07 | 433 |
stem cell | 4.18e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.99e-57 | 76 |
bone element | 1.73e-52 | 82 |
skeletal element | 2.94e-47 | 90 |
immune system | 1.58e-45 | 93 |
hematopoietic system | 7.15e-43 | 98 |
blood island | 7.15e-43 | 98 |
skeletal system | 6.96e-42 | 100 |
hemolymphoid system | 2.71e-38 | 108 |
musculoskeletal system | 2.29e-22 | 167 |
lateral plate mesoderm | 5.84e-20 | 203 |
connective tissue | 9.64e-11 | 371 |
mesoderm | 2.78e-10 | 315 |
mesoderm-derived structure | 2.78e-10 | 315 |
presumptive mesoderm | 2.78e-10 | 315 |