FFCP PHASE1:Hg19::chr3:119281446..119281491,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:119281446..119281491,- | |||
|coexpression_cluster_id=C2573 | |coexpression_cluster_id=C2573 | ||
|description=CAGE_peak_at_chr3:119281446..119281491,- | |description=CAGE_peak_at_chr3:119281446..119281491,- | ||
Line 9: | Line 14: | ||
|ontology_enrichment_celltype=CL:0000738!2.55e-71!140;CL:0002087!8.62e-61!119;CL:0002031!6.53e-60!124;CL:0000988!1.83e-56!182;CL:0000037!1.44e-54!172;CL:0000566!1.44e-54!172;CL:0002032!6.75e-52!165;CL:0000837!6.75e-52!165;CL:0002057!7.83e-40!42;CL:0000860!1.44e-36!45;CL:0000838!1.53e-30!52;CL:0000542!8.53e-30!53;CL:0000051!8.53e-30!53;CL:0000557!2.99e-28!71;CL:0002009!9.23e-28!65;CL:0000766!1.27e-27!76;CL:0000839!8.23e-25!70;CL:0002194!9.38e-25!63;CL:0000576!9.38e-25!63;CL:0000040!9.38e-25!63;CL:0000559!9.38e-25!63;CL:0000763!2.16e-22!112;CL:0000049!2.16e-22!112;CL:0000945!2.75e-18!24;CL:0000826!2.75e-18!24;CL:0000134!5.21e-18!358;CL:0002320!2.65e-17!365;CL:0000219!8.04e-15!390;CL:0000080!1.59e-14!6;CL:0000453!7.04e-13!5;CL:0000048!1.75e-12!430;CL:0002393!2.19e-12!9;CL:0002397!2.19e-12!9;CL:0000034!3.30e-12!444;CL:0000723!4.70e-12!436;CL:0000084!1.55e-09!25;CL:0000827!1.55e-09!25;CL:0000990!2.82e-09!8;CL:0000767!4.53e-08!3;CL:0000791!8.28e-08!18;CL:0000789!8.28e-08!18;CL:0002420!8.28e-08!18;CL:0002419!8.28e-08!18;CL:0000790!8.28e-08!18;CL:0000623!1.06e-07!3;CL:0000825!1.06e-07!3;CL:0000842!1.39e-07!3;CL:0000451!2.00e-07!10 | |ontology_enrichment_celltype=CL:0000738!2.55e-71!140;CL:0002087!8.62e-61!119;CL:0002031!6.53e-60!124;CL:0000988!1.83e-56!182;CL:0000037!1.44e-54!172;CL:0000566!1.44e-54!172;CL:0002032!6.75e-52!165;CL:0000837!6.75e-52!165;CL:0002057!7.83e-40!42;CL:0000860!1.44e-36!45;CL:0000838!1.53e-30!52;CL:0000542!8.53e-30!53;CL:0000051!8.53e-30!53;CL:0000557!2.99e-28!71;CL:0002009!9.23e-28!65;CL:0000766!1.27e-27!76;CL:0000839!8.23e-25!70;CL:0002194!9.38e-25!63;CL:0000576!9.38e-25!63;CL:0000040!9.38e-25!63;CL:0000559!9.38e-25!63;CL:0000763!2.16e-22!112;CL:0000049!2.16e-22!112;CL:0000945!2.75e-18!24;CL:0000826!2.75e-18!24;CL:0000134!5.21e-18!358;CL:0002320!2.65e-17!365;CL:0000219!8.04e-15!390;CL:0000080!1.59e-14!6;CL:0000453!7.04e-13!5;CL:0000048!1.75e-12!430;CL:0002393!2.19e-12!9;CL:0002397!2.19e-12!9;CL:0000034!3.30e-12!444;CL:0000723!4.70e-12!436;CL:0000084!1.55e-09!25;CL:0000827!1.55e-09!25;CL:0000990!2.82e-09!8;CL:0000767!4.53e-08!3;CL:0000791!8.28e-08!18;CL:0000789!8.28e-08!18;CL:0002420!8.28e-08!18;CL:0002419!8.28e-08!18;CL:0000790!8.28e-08!18;CL:0000623!1.06e-07!3;CL:0000825!1.06e-07!3;CL:0000842!1.39e-07!3;CL:0000451!2.00e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000945;5.75e-24;24!CL:0002393;2.17e-23;6!CL:0002397;2.17e-23;6!CL:0000453;1.47e-20;5!CL:0002087;9.49e-20;104!CL:0000767;3.17e-12;3!CL:0000226;1.01e-11;3!CL:0000623;1.01e-11;3!CL:0000842;1.01e-11;3!CL:0000576;1.35e-11;48!CL:0000542;2.55e-11;53!CL:0000990;2.84e-11;8!CL:0000738;3.94e-11;136!CL:0000860;1.39e-10;33!CL:0002057;1.39e-10;33!CL:0000766;2.50e-10;69!CL:0000451;3.73e-09;10!CL:0001014;4.90e-09;2!CL:0001016;4.90e-09;2!CL:0000988;1.59e-08;177!CL:0000473;1.31e-07;39!CL:0000234;1.31e-07;39 | |ontology_enrichment_celltype_v019=CL:0000945;5.75e-24;24!CL:0002393;2.17e-23;6!CL:0002397;2.17e-23;6!CL:0000453;1.47e-20;5!CL:0002087;9.49e-20;104!CL:0000767;3.17e-12;3!CL:0000226;1.01e-11;3!CL:0000623;1.01e-11;3!CL:0000842;1.01e-11;3!CL:0000576;1.35e-11;48!CL:0000542;2.55e-11;53!CL:0000990;2.84e-11;8!CL:0000738;3.94e-11;136!CL:0000860;1.39e-10;33!CL:0002057;1.39e-10;33!CL:0000766;2.50e-10;69!CL:0000451;3.73e-09;10!CL:0001014;4.90e-09;2!CL:0001016;4.90e-09;2!CL:0000988;1.59e-08;177!CL:0000473;1.31e-07;39!CL:0000234;1.31e-07;39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000738,1.25e-54,136;CL:0000988,2.11e-46,177;CL:0000037,2.19e-42,168;CL:0002087,8.44e-41,115;CL:0002031,7.06e-39,120;CL:0002032,2.24e-38,161;CL:0000837,2.24e-38,161;CL:0000945,5.66e-24,24;CL:0000826,5.66e-24,24;CL:0000860,4.83e-22,42;CL:0002057,4.83e-22,42;CL:0000838,1.12e-21,52;CL:0000542,3.53e-21,53;CL:0000051,3.53e-21,53;CL:0000453,1.60e-20,5;CL:0000473,8.96e-19,48;CL:0000234,8.96e-19,48;CL:0000766,9.69e-18,72;CL:0002009,1.47e-17,61;CL:0000763,1.94e-17,108;CL:0000049,1.94e-17,108;CL:0000557,2.10e-17,67;CL:0002393,1.92e-15,9;CL:0002397,1.92e-15,9;CL:0000134,7.50e-15,354;CL:0002320,2.30e-14,361;CL:0002194,3.27e-14,59;CL:0000576,3.27e-14,59;CL:0000040,3.27e-14,59;CL:0000559,3.27e-14,59;CL:0000839,6.53e-14,66;CL:0000219,1.18e-12,386;CL:0000767,1.81e-12,3;CL:0000623,7.50e-12,3;CL:0000825,7.50e-12,3;CL:0000226,1.18e-11,3;CL:0000842,1.18e-11,3;CL:0000990,2.97e-11,8;CL:0000034,1.04e-10,441;CL:0000048,1.46e-10,427;CL:0000723,2.84e-10,433;CL:0000451,3.86e-09,10;CL:0001014,5.31e-09,2;CL:0001016,5.31e-09,2;CL:0000236,8.51e-07,14 | |||
|ontology_enrichment_development_v019=CL:0002057;3.14e-15;42!CL:0000051;2.55e-11;53 | |ontology_enrichment_development_v019=CL:0002057;3.14e-15;42!CL:0000051;2.55e-11;53 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.55e-33!102;UBERON:0003061!1.55e-33!102;UBERON:0002193!2.21e-32!112;UBERON:0002371!1.15e-25!80;UBERON:0001474!3.53e-23!86;UBERON:0002405!9.92e-22!115;UBERON:0004765!1.70e-19!101;UBERON:0001434!1.70e-19!101;UBERON:0002384!2.43e-16!375;UBERON:0003081!1.85e-09!216;UBERON:0002204!4.38e-08!167 | |ontology_enrichment_uberon=UBERON:0002390!1.55e-33!102;UBERON:0003061!1.55e-33!102;UBERON:0002193!2.21e-32!112;UBERON:0002371!1.15e-25!80;UBERON:0001474!3.53e-23!86;UBERON:0002405!9.92e-22!115;UBERON:0004765!1.70e-19!101;UBERON:0001434!1.70e-19!101;UBERON:0002384!2.43e-16!375;UBERON:0003081!1.85e-09!216;UBERON:0002204!4.38e-08!167 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;6.11e-09;15!UBERON:0000179;6.11e-09;15!UBERON:0000463;6.11e-09;15 | |ontology_enrichment_uberon_v019=UBERON:0000178;6.11e-09;15!UBERON:0000179;6.11e-09;15!UBERON:0000463;6.11e-09;15 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,2.18e-23,98;UBERON:0003061,2.18e-23,98;UBERON:0002193,1.31e-20,108;UBERON:0002371,1.78e-16,76;UBERON:0001474,6.40e-15,82;UBERON:0002405,4.12e-14,93;UBERON:0002384,1.06e-13,371;UBERON:0004765,3.61e-13,90;UBERON:0001434,2.23e-11,100;UBERON:0000178,6.49e-09,15;UBERON:0000179,6.49e-09,15;UBERON:0000463,6.49e-09,15;UBERON:0003081,5.90e-08,203 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,2.8735206307481,1.57421562627358,5.50709987588466,1.91914699048606,2.94150634300544,0,0,0,0,1.27952309238679,0,18.281848481552,14.8402891127905,18.8799457522791,0,0,0,0,0,0.242584061187816,0,0.822335776043652,1.23882548358041,0.28769239232215,0.512321413058201,0.945928919554341,0.344745680736619,1.29096936716765,1.35426486594342,0,0.272906150057846,0.674170453335254,1.22433556948361,1.60464513538047,3.19668562899521,0,0,0,2.32167390902867,1.13477044938228,0.622822248995575,0,0,0.65156653411535,1.81619850790011,2.20966581592539,4.1140110367315,1.47878700418359,1.91343869968539,2.09658645508376,0,0.300353785683013,0.48217676009124,0,0,0.365328307529268,0,0.546138611262131,0,1.70692089026603,0,0,0,0,4.55370375287559,3.52342313622563,3.44045905312706,0,6.1655941927969,0,0.393419540227666,0.786021525498329,0.411202997999018,0,0,0,0,0.445641827540694,0.294605907474837,0,0,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,2.82249440514625,0.802320587350522,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0.621984346622316,1.00883967391873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36436912242313,1.72502059887614,1.41177339907723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,2.5885704098234,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,3.93871377475422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0590706107009,11.9857020778108,15.9765582743347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,8.54900787895702,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,2.19226677085613,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01497111821798,10.7620520653824,16.847235608352,0,0,0,4.99968489637325,0,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88084968889448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,5.99646935549574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,3.52625341533556 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.22261449196722,2.8735206307481,1.57421562627358,5.50709987588466,1.91914699048606,2.94150634300544,0,0,0,0,1.27952309238679,0,18.281848481552,14.8402891127905,18.8799457522791,0,0,0,0,0,0.242584061187816,0,0.822335776043652,1.23882548358041,0.28769239232215,0.512321413058201,0.945928919554341,0.344745680736619,1.29096936716765,1.35426486594342,0,0.272906150057846,0.674170453335254,1.22433556948361,1.60464513538047,3.19668562899521,0,0,0,2.32167390902867,1.13477044938228,0.622822248995575,0,0,0.65156653411535,1.81619850790011,2.20966581592539,4.1140110367315,1.47878700418359,1.91343869968539,2.09658645508376,0,0.300353785683013,0.48217676009124,0,0,0.365328307529268,0,0.546138611262131,0,1.70692089026603,0,0,0,0,4.55370375287559,3.52342313622563,3.44045905312706,0,6.1655941927969,0,0.393419540227666,0.786021525498329,0.411202997999018,0,0,0,0,0.445641827540694,0.294605907474837,0,0,0.128091319725675,0.260118695119756,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,2.82249440514625,0.802320587350522,0.724122019413995,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132957960518865,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0.16798212819886,0,0,0,0,0,0,0.621984346622316,1.00883967391873,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.36436912242313,1.72502059887614,1.41177339907723,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.03384013061444,2.5885704098234,1.60091336705167,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.552567831062295,0,0,3.93871377475422,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,29.0590706107009,11.9857020778108,15.9765582743347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254019996197353,0,0,0,0,0,8.54900787895702,2.32140586367385,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106787412567695,0,0,0,0,2.19226677085613,0,0,0,0.306345576763462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150257608997218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.01497111821798,10.7620520653824,16.847235608352,0,0,0,4.99968489637325,0,1.20550485762571,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.88084968889448,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,5.99646935549574,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129177819672012,0.0620747142958579,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,3.52625341533556 | ||
|short_description=p@chr3:119281446..119281491,- | |short_description=p@chr3:119281446..119281491,- | ||
}} | }} |
Latest revision as of 14:46, 29 July 2015
Short description: | p@chr3:119281446..119281491, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:119281446..119281491, - |
Coexpression cluster: | C2573_cord_CD14_migratory_CD19_splenic_CD34_immature |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 2.18e-23 | 98 |
blood island | 2.18e-23 | 98 |
hemolymphoid system | 1.31e-20 | 108 |
bone marrow | 1.78e-16 | 76 |
bone element | 6.40e-15 | 82 |
immune system | 4.12e-14 | 93 |
connective tissue | 1.06e-13 | 371 |
skeletal element | 3.61e-13 | 90 |
skeletal system | 2.23e-11 | 100 |
blood | 6.49e-09 | 15 |
haemolymphatic fluid | 6.49e-09 | 15 |
organism substance | 6.49e-09 | 15 |
lateral plate mesoderm | 5.90e-08 | 203 |