FFCP PHASE1:Hg19::chr3:42108875..42108907,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:42108875..42108907,- | |||
|coexpression_cluster_id=C1637 | |||
|description=CAGE_peak_at_chr3:42108875..42108907,- | |description=CAGE_peak_at_chr3:42108875..42108907,- | ||
|id=chr3:42108875..42108907,- | |id=chr3:42108875..42108907,- | ||
|ontology_enrichment_celltype=CL:0000738!5.09e-29!140;CL:0002087!3.38e-23!119;CL:0000037!5.04e-23!172;CL:0000566!5.04e-23!172;CL:0000988!1.88e-22!182;CL:0002031!7.42e-22!124;CL:0000134!1.51e-19!358;CL:0002032!1.75e-19!165;CL:0000837!1.75e-19!165;CL:0002320!2.68e-19!365;CL:0000945!1.39e-18!24;CL:0000826!1.39e-18!24;CL:0002057!3.01e-17!42;CL:0002393!3.79e-16!9;CL:0002397!3.79e-16!9;CL:0000860!1.36e-15!45;CL:0000219!1.42e-15!390;CL:0000236!3.46e-14!14;CL:0000048!1.08e-13!430;CL:0000034!1.11e-13!444;CL:0000723!3.83e-13!436;CL:0000766!5.29e-13!76;CL:0000542!1.99e-12!53;CL:0000051!1.99e-12!53;CL:0000838!1.04e-11!52;CL:0000839!3.26e-11!70;CL:0000557!6.05e-11!71;CL:0002194!6.67e-10!63;CL:0000576!6.67e-10!63;CL:0000040!6.67e-10!63;CL:0000559!6.67e-10!63;CL:0002009!2.17e-09!65;CL:0000763!1.51e-08!112;CL:0000049!1.51e-08!112 | |ontology_enrichment_celltype=CL:0000738!5.09e-29!140;CL:0002087!3.38e-23!119;CL:0000037!5.04e-23!172;CL:0000566!5.04e-23!172;CL:0000988!1.88e-22!182;CL:0002031!7.42e-22!124;CL:0000134!1.51e-19!358;CL:0002032!1.75e-19!165;CL:0000837!1.75e-19!165;CL:0002320!2.68e-19!365;CL:0000945!1.39e-18!24;CL:0000826!1.39e-18!24;CL:0002057!3.01e-17!42;CL:0002393!3.79e-16!9;CL:0002397!3.79e-16!9;CL:0000860!1.36e-15!45;CL:0000219!1.42e-15!390;CL:0000236!3.46e-14!14;CL:0000048!1.08e-13!430;CL:0000034!1.11e-13!444;CL:0000723!3.83e-13!436;CL:0000766!5.29e-13!76;CL:0000542!1.99e-12!53;CL:0000051!1.99e-12!53;CL:0000838!1.04e-11!52;CL:0000839!3.26e-11!70;CL:0000557!6.05e-11!71;CL:0002194!6.67e-10!63;CL:0000576!6.67e-10!63;CL:0000040!6.67e-10!63;CL:0000559!6.67e-10!63;CL:0002009!2.17e-09!65;CL:0000763!1.51e-08!112;CL:0000049!1.51e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000236;3.30e-44;13!CL:0002393;3.65e-25;6!CL:0002397;3.65e-25;6!CL:0000945;3.82e-23;24!CL:0000767;5.11e-19;3!CL:0000875;9.36e-19;3!CL:0002396;9.36e-19;3!CL:0000766;2.81e-12;69!CL:0000576;4.16e-12;48!CL:0002087;4.07e-11;104!CL:0000542;6.27e-11;53!CL:0000094;1.99e-07;8!CL:0000222;2.22e-07;1!CL:0000738;7.04e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0002393,3.58e-42,9;CL:0002397,3.58e-42,9;CL:0000236,5.35e-41,14;CL:0000738,1.42e-33,136;CL:0002031,1.98e-30,120;CL:0002087,2.13e-29,115;CL:0002032,1.58e-27,161;CL:0000837,1.58e-27,161;CL:0000037,3.73e-26,168;CL:0000988,1.51e-24,177;CL:0000945,3.48e-23,24;CL:0000826,3.48e-23,24;CL:0000766,1.17e-22,72;CL:0000860,2.32e-21,42;CL:0002057,2.32e-21,42;CL:0000767,3.25e-19,3;CL:0000875,7.15e-19,3;CL:0002396,7.15e-19,3;CL:0000473,2.30e-18,48;CL:0000234,2.30e-18,48;CL:0000839,8.71e-17,66;CL:0002194,1.59e-16,59;CL:0000576,1.59e-16,59;CL:0000040,1.59e-16,59;CL:0000559,1.59e-16,59;CL:0000557,1.71e-16,67;CL:0002009,6.72e-16,61;CL:0000838,4.55e-14,52;CL:0000763,6.44e-14,108;CL:0000049,6.44e-14,108;CL:0000542,9.27e-14,53;CL:0000051,9.27e-14,53;CL:0000134,2.35e-10,354;CL:0002320,4.86e-10,361;CL:0000219,6.30e-09,386;CL:0000034,9.41e-09,441;CL:0000048,2.20e-08,427;CL:0000723,3.50e-08,433;CL:0000094,1.69e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;1.43e-15;42!CL:0000051;6.27e-11;53 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002384!9.60e-19!375;UBERON:0002390!1.51e-14!102;UBERON:0003061!1.51e-14!102;UBERON:0002371!2.14e-12!80;UBERON:0002193!3.03e-12!112;UBERON:0001474!6.57e-11!86;UBERON:0004765!1.01e-08!101;UBERON:0001434!1.01e-08!101;UBERON:0002405!7.08e-08!115 | |ontology_enrichment_uberon=UBERON:0002384!9.60e-19!375;UBERON:0002390!1.51e-14!102;UBERON:0003061!1.51e-14!102;UBERON:0002371!2.14e-12!80;UBERON:0002193!3.03e-12!112;UBERON:0001474!6.57e-11!86;UBERON:0004765!1.01e-08!101;UBERON:0001434!1.01e-08!101;UBERON:0002405!7.08e-08!115 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.33e-14,76;UBERON:0001474,5.90e-13,82;UBERON:0004765,1.51e-11,90;UBERON:0002405,4.41e-11,93;UBERON:0002390,2.28e-10,98;UBERON:0003061,2.28e-10,98;UBERON:0001434,4.20e-10,100;UBERON:0002384,1.31e-09,371;UBERON:0002193,3.85e-09,108 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,1.96682138424452,5.37361157336098,8.20525453575203,0,0,0,0.0774672005803016,0.568676929949686,0.880801318004542,3.32397245119126,0.401088894940283,1.95309783644267,0,0,0,0,0,0,0,0,0.619412741790207,0,0,1.18241114944293,0,0,1.35426486594342,0.188242339542605,0,0.224723484445085,0,0,3.19668562899521,0,0.398927315243264,0,0,0,0.622822248995575,0,0.521482918420201,1.08594422352558,0,0.368277635987565,1.26584954976354,3.80259515361495,2.97646019951061,5.66078342872615,0.336985893439485,0.450530678524519,0.32145117339416,3.70516566863623,1.59133341759272,4.01861138282195,0,1.09227722252426,1.77901850772711,2.98711155796555,2.00197993518006,1.14950487990897,2.64417949113945,1.90810750907073,8.53819453664173,4.69789751496751,6.88091810625412,0,1.12101712596307,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05402583354441,0.127986611154418,1.24930726552346,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19245312152671,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.538168907066586,0,0,0.300091096084402,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,0.864719720501769,1.38866676769018,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.385029108839245,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0.356857977594324,0,0,0,0,0,0.664225598535437,0,0,0,0,0.82707210449155,0.862856803274467,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0.251932747854276,0,0.615424027305347,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0.415440338029185,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0.544017803369474,0.5013797880454,0.919036730290385,0.655745261419609,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04478362020812,0,0.554805861502613,0.189403005275089,0.50313580350515,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0,0,0,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0,0,0,0,0,0,2.52369796457302,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.490696182767533,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0.169732529954025,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699588091474503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0821005894499457,0,1.96682138424452,5.37361157336098,8.20525453575203,0,0,0,0.0774672005803016,0.568676929949686,0.880801318004542,3.32397245119126,0.401088894940283,1.95309783644267,0,0,0,0,0,0,0,0,0.619412741790207,0,0,1.18241114944293,0,0,1.35426486594342,0.188242339542605,0,0.224723484445085,0,0,3.19668562899521,0,0.398927315243264,0,0,0,0.622822248995575,0,0.521482918420201,1.08594422352558,0,0.368277635987565,1.26584954976354,3.80259515361495,2.97646019951061,5.66078342872615,0.336985893439485,0.450530678524519,0.32145117339416,3.70516566863623,1.59133341759272,4.01861138282195,0,1.09227722252426,1.77901850772711,2.98711155796555,2.00197993518006,1.14950487990897,2.64417949113945,1.90810750907073,8.53819453664173,4.69789751496751,6.88091810625412,0,1.12101712596307,0.526768169550154,0,0,0.205601498999509,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.05402583354441,0.127986611154418,1.24930726552346,0,0,0,0,0,0,0,0,0.361439152384566,0,0,0,0,0,0,0,0,0,0,0,0,0,1.19245312152671,0.571994910780128,0.74291500265913,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.397227542439656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.538168907066586,0,0,0.300091096084402,0,0,0,0.337552664482532,0,0.252433774244115,0,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.829312462163088,0.864719720501769,1.38866676769018,0,0,0,0,0,0,0,0,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0.355391948742546,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.385029108839245,0,1.30139853857622,0,0.167516265334349,0,0,0,0,0.12269149171914,0,0,0,0.356857977594324,0,0,0,0,0,0.664225598535437,0,0,0,0,0.82707210449155,0.862856803274467,0,0,0,0,0,0.153461973288062,0,0,0,0,0,0,0.177561725313127,0,0,0.116210378459959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329294892959902,0,0,0,0,0,0,0,0,0,0,0,0,0,0.238231775457789,0,0.648473311192717,0.540031437238115,0,0,0,0,0.185803175125719,0,0,0,0,0,0,0.324621940274555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296964680832639,0,0,0,0,0,0,0,0,0.251932747854276,0,0.615424027305347,0,0,0,0,0.493217028184668,0,0,0,0,0,0,0,0,0,0,0,0,0.291604613383254,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0,0,0.296521128680622,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0.379119477770928,0,0,0,0,0,0,0,0.138674673013139,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.429765441419957,0,0,0.229160424011684,0,0,0,0,0,0,0,0,0,0,0,0.592713324460491,0,0,0,0,0.415440338029185,0,0,0,0,0,0,0,0.179287339332845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243585196761792,0,0.544017803369474,0.5013797880454,0.919036730290385,0.655745261419609,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,1.04478362020812,0,0.554805861502613,0.189403005275089,0.50313580350515,0,0.228840068396924,0.151230923763239,0,0.147855149989634,0,0,0,0.414706207840855,0.265841714557995,0,0.150257608997218,0,0.406870733204662,0.363697318405119,0,0,0,0,0,0,2.52369796457302,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132864840313363,0.490696182767533,0,0,0,0,0,0.172214979660816,0,0,0,0,0,0,0,0,0.169732529954025,0,0.247871528518004,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.230467975111559,0,0.0679697329768317,0,0,0,0,0,0,0,0,0,0.142953088353313,0,0.23248285073625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.485710993059139,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.699588091474503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426467963801962,0,0,0,0,0,0,0.217716747896961,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr3:42108875..42108907,- | |short_description=p@chr3:42108875..42108907,- | ||
}} | }} |
Latest revision as of 20:59, 29 July 2015
Short description: | p@chr3:42108875..42108907, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:42108875..42108907, - |
Coexpression cluster: | C1637_CD19_Basophils_CD14_CD14CD16_Peripheral_Mast_CD4 |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.33e-14 | 76 |
bone element | 5.90e-13 | 82 |
skeletal element | 1.51e-11 | 90 |
immune system | 4.41e-11 | 93 |
hematopoietic system | 2.28e-10 | 98 |
blood island | 2.28e-10 | 98 |
skeletal system | 4.20e-10 | 100 |
connective tissue | 1.31e-09 | 371 |
hemolymphoid system | 3.85e-09 | 108 |