FFCP PHASE1:Hg19::chr4:185314188..185314207,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr4:185314188..185314207,- | |||
|coexpression_cluster_id=C687 | |coexpression_cluster_id=C687 | ||
|description=CAGE_peak_at_chr4:185314188..185314207,- | |description=CAGE_peak_at_chr4:185314188..185314207,- | ||
|id=chr4:185314188..185314207,- | |id=chr4:185314188..185314207,- | ||
|ontology_enrichment_celltype=CL:0002194!3.37e-65!63;CL:0000576!3.37e-65!63;CL:0000040!3.37e-65!63;CL:0000559!3.37e-65!63;CL:0002009!1.32e-62!65;CL:0000766!9.38e-60!76;CL:0002057!3.27e-57!42;CL:0000839!9.07e-57!70;CL:0000557!1.06e-55!71;CL:0000860!2.35e-52!45;CL:0000763!7.66e-37!112;CL:0000049!7.66e-37!112;CL:0002087!8.96e-36!119;CL:0000738!8.51e-35!140;CL:0002031!1.49e-29!124;CL:0000037!2.95e-24!172;CL:0000566!2.95e-24!172;CL:0002032!4.15e-23!165;CL:0000837!4.15e-23!165;CL:0000988!9.23e-22!182;CL:0002393!2.58e-09!9;CL:0002397!2.58e-09!9 | |ontology_enrichment_celltype=CL:0002194!3.37e-65!63;CL:0000576!3.37e-65!63;CL:0000040!3.37e-65!63;CL:0000559!3.37e-65!63;CL:0002009!1.32e-62!65;CL:0000766!9.38e-60!76;CL:0002057!3.27e-57!42;CL:0000839!9.07e-57!70;CL:0000557!1.06e-55!71;CL:0000860!2.35e-52!45;CL:0000763!7.66e-37!112;CL:0000049!7.66e-37!112;CL:0002087!8.96e-36!119;CL:0000738!8.51e-35!140;CL:0002031!1.49e-29!124;CL:0000037!2.95e-24!172;CL:0000566!2.95e-24!172;CL:0002032!4.15e-23!165;CL:0000837!4.15e-23!165;CL:0000988!9.23e-22!182;CL:0002393!2.58e-09!9;CL:0002397!2.58e-09!9 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.48e-112;33!CL:0002057;7.48e-112;33!CL:0000473;6.00e-105;39!CL:0000234;6.00e-105;39!CL:0000576;3.56e-72;48!CL:0000766;4.67e-46;69!CL:0000763;1.20e-24;100!CL:0000235;1.20e-16;6!CL:0002087;1.49e-16;104!CL:0000738;1.40e-15;136!CL:0002619;4.28e-13;3!CL:0000988;3.49e-08;177!CL:0000219;5.65e-07;193 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,4.07e-131,59;CL:0000576,4.07e-131,59;CL:0000040,4.07e-131,59;CL:0000559,4.07e-131,59;CL:0002009,1.40e-126,61;CL:0000473,1.61e-123,48;CL:0000234,1.61e-123,48;CL:0000839,2.02e-116,66;CL:0000766,9.34e-116,72;CL:0000557,1.44e-114,67;CL:0000860,2.40e-107,42;CL:0002057,2.40e-107,42;CL:0000763,2.54e-74,108;CL:0000049,2.54e-74,108;CL:0002087,3.52e-63,115;CL:0002031,3.61e-60,120;CL:0000738,3.92e-57,136;CL:0002032,8.46e-47,161;CL:0000837,8.46e-47,161;CL:0000037,1.88e-44,168;CL:0000988,1.05e-41,177;CL:0000235,1.06e-16,6;CL:0000134,6.48e-16,354;CL:0002320,2.07e-15,361;CL:0000219,1.23e-13,386;CL:0002619,4.11e-13,3;CL:0000048,1.84e-11,427;CL:0000723,3.66e-11,433;CL:0000034,8.94e-11,441 | |||
|ontology_enrichment_development_v019=CL:0002057;2.45e-77;42!CL:0000049;3.79e-23;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.20e-51!102;UBERON:0003061!9.20e-51!102;UBERON:0002193!3.09e-49!112;UBERON:0002371!4.09e-49!80;UBERON:0001474!2.42e-44!86;UBERON:0002405!6.98e-41!115;UBERON:0004765!1.86e-36!101;UBERON:0001434!1.86e-36!101;UBERON:0007023!6.63e-22!115;UBERON:0003081!1.61e-19!216;UBERON:0002204!4.59e-18!167;UBERON:0000062!2.61e-10!511;UBERON:0000467!1.58e-07!625;UBERON:0000923!1.77e-07!604;UBERON:0005291!1.77e-07!604;UBERON:0006598!1.77e-07!604;UBERON:0002532!1.77e-07!604;UBERON:0000480!1.82e-07!626;UBERON:0002050!2.04e-07!605;UBERON:0005423!2.04e-07!605;UBERON:0000922!5.49e-07!612;UBERON:0002020!6.60e-07!34;UBERON:0003528!6.60e-07!34;UBERON:0001893!7.51e-07!34 | |ontology_enrichment_uberon=UBERON:0002390!9.20e-51!102;UBERON:0003061!9.20e-51!102;UBERON:0002193!3.09e-49!112;UBERON:0002371!4.09e-49!80;UBERON:0001474!2.42e-44!86;UBERON:0002405!6.98e-41!115;UBERON:0004765!1.86e-36!101;UBERON:0001434!1.86e-36!101;UBERON:0007023!6.63e-22!115;UBERON:0003081!1.61e-19!216;UBERON:0002204!4.59e-18!167;UBERON:0000062!2.61e-10!511;UBERON:0000467!1.58e-07!625;UBERON:0000923!1.77e-07!604;UBERON:0005291!1.77e-07!604;UBERON:0006598!1.77e-07!604;UBERON:0002532!1.77e-07!604;UBERON:0000480!1.82e-07!626;UBERON:0002050!2.04e-07!605;UBERON:0005423!2.04e-07!605;UBERON:0000922!5.49e-07!612;UBERON:0002020!6.60e-07!34;UBERON:0003528!6.60e-07!34;UBERON:0001893!7.51e-07!34 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.64e-100,76;UBERON:0001474,3.92e-92,82;UBERON:0002405,1.07e-87,93;UBERON:0004765,3.45e-83,90;UBERON:0002390,9.99e-83,98;UBERON:0003061,9.99e-83,98;UBERON:0002193,1.40e-77,108;UBERON:0001434,5.35e-74,100;UBERON:0002204,1.30e-40,167;UBERON:0003081,4.37e-35,203;UBERON:0000926,4.22e-19,315;UBERON:0004120,4.22e-19,315;UBERON:0006603,4.22e-19,315;UBERON:0002384,1.01e-14,371;UBERON:0000923,9.27e-07,560;UBERON:0010316,9.27e-07,560;UBERON:0005291,9.27e-07,560;UBERON:0006598,9.27e-07,560;UBERON:0010317,9.27e-07,560;UBERON:0002532,9.27e-07,560 | |||
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|short_description=p@chr4:185314188..185314207,- | |short_description=p@chr4:185314188..185314207,- | ||
}} | }} |
Latest revision as of 03:52, 30 July 2015
Short description: | p@chr4:185314188..185314207, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr4:185314188..185314207, - |
Coexpression cluster: | C687_CD14_Macrophage_Monocytederived_Dendritic_Endothelial_Pericytes_schwannoma |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 4.07e-131 | 59 |
monocyte | 4.07e-131 | 59 |
monoblast | 4.07e-131 | 59 |
promonocyte | 4.07e-131 | 59 |
macrophage dendritic cell progenitor | 1.40e-126 | 61 |
defensive cell | 1.61e-123 | 48 |
phagocyte | 1.61e-123 | 48 |
myeloid lineage restricted progenitor cell | 2.02e-116 | 66 |
myeloid leukocyte | 9.34e-116 | 72 |
granulocyte monocyte progenitor cell | 1.44e-114 | 67 |
classical monocyte | 2.40e-107 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.40e-107 | 42 |
myeloid cell | 2.54e-74 | 108 |
common myeloid progenitor | 2.54e-74 | 108 |
nongranular leukocyte | 3.52e-63 | 115 |
hematopoietic lineage restricted progenitor cell | 3.61e-60 | 120 |
leukocyte | 3.92e-57 | 136 |
hematopoietic oligopotent progenitor cell | 8.46e-47 | 161 |
hematopoietic multipotent progenitor cell | 8.46e-47 | 161 |
hematopoietic stem cell | 1.88e-44 | 168 |
hematopoietic cell | 1.05e-41 | 177 |
macrophage | 1.06e-16 | 6 |
mesenchymal cell | 6.48e-16 | 354 |
connective tissue cell | 2.07e-15 | 361 |
motile cell | 1.23e-13 | 386 |
adult endothelial progenitor cell | 4.11e-13 | 3 |
multi fate stem cell | 1.84e-11 | 427 |
somatic stem cell | 3.66e-11 | 433 |
stem cell | 8.94e-11 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.64e-100 | 76 |
bone element | 3.92e-92 | 82 |
immune system | 1.07e-87 | 93 |
skeletal element | 3.45e-83 | 90 |
hematopoietic system | 9.99e-83 | 98 |
blood island | 9.99e-83 | 98 |
hemolymphoid system | 1.40e-77 | 108 |
skeletal system | 5.35e-74 | 100 |
musculoskeletal system | 1.30e-40 | 167 |
lateral plate mesoderm | 4.37e-35 | 203 |
mesoderm | 4.22e-19 | 315 |
mesoderm-derived structure | 4.22e-19 | 315 |
presumptive mesoderm | 4.22e-19 | 315 |
connective tissue | 1.01e-14 | 371 |
germ layer | 9.27e-07 | 560 |
germ layer / neural crest | 9.27e-07 | 560 |
embryonic tissue | 9.27e-07 | 560 |
presumptive structure | 9.27e-07 | 560 |
germ layer / neural crest derived structure | 9.27e-07 | 560 |
epiblast (generic) | 9.27e-07 | 560 |