FFCP PHASE1:Hg19::chr6:30895835..30895839,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:30895835..30895839,+ to FFCP PHASE1:Hg19::chr6:30895835..30895839,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr6:30895835..30895839,+ | |||
|description=CAGE_peak_at_chr6:30895835..30895839,+ | |||
|id=chr6:30895835..30895839,+ | |||
|ontology_enrichment_celltype=CL:0000133!4.54e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.97e-09;6!CL:0000404;2.97e-09;6!CL:0000239;3.19e-08;3!CL:1000615;3.19e-08;3!CL:0002306;3.19e-08;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,1.96e-09,6;CL:0000031,1.96e-09,6;CL:0000404,1.96e-09,6;CL:0000239,3.26e-08,3;CL:1000615,3.26e-08,3;CL:0002306,3.26e-08,3;CL:0000047,6.01e-07,8 | |||
|ontology_enrichment_development_v019=CL:0000031;2.97e-09;6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000924!7.05e-10!173;UBERON:0006601!7.05e-10!173;UBERON:0000073!7.50e-10!94;UBERON:0001016!7.50e-10!94;UBERON:0004121!2.00e-09!169;UBERON:0005743!7.65e-09!86;UBERON:0001017!1.00e-08!82;UBERON:0000064!3.22e-08!219;UBERON:0002346!4.80e-08!90;UBERON:0001049!1.33e-07!57;UBERON:0005068!1.33e-07!57;UBERON:0006241!1.33e-07!57;UBERON:0007135!1.33e-07!57;UBERON:0003075!1.34e-07!86;UBERON:0007284!1.34e-07!86;UBERON:0000955!1.90e-07!69;UBERON:0006238!1.90e-07!69;UBERON:0002780!6.31e-07!41;UBERON:0001890!6.31e-07!41;UBERON:0006240!6.31e-07!41;UBERON:0002616!6.71e-07!59;UBERON:0002020!8.21e-07!34;UBERON:0003528!8.21e-07!34;UBERON:0001893!8.24e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0002780;1.83e-08;41!UBERON:0001890;1.83e-08;41!UBERON:0006853;3.19e-08;3!UBERON:0007685;3.19e-08;3!UBERON:0004134;3.19e-08;3!UBERON:0000073;3.62e-08;53!UBERON:0002616;3.62e-08;53!UBERON:0003528;6.44e-08;34!UBERON:0002020;6.44e-08;34!UBERON:0002791;1.82e-07;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.35e-13,81;UBERON:0001016,1.48e-12,89;UBERON:0001049,4.99e-12,56;UBERON:0005068,4.99e-12,56;UBERON:0006241,4.99e-12,56;UBERON:0007135,4.99e-12,56;UBERON:0000073,1.40e-11,53;UBERON:0002616,1.40e-11,53;UBERON:0002780,7.16e-10,41;UBERON:0001890,7.16e-10,41;UBERON:0003080,7.16e-10,41;UBERON:0006240,7.16e-10,41;UBERON:0000955,1.04e-09,68;UBERON:0006238,1.04e-09,68;UBERON:0003528,1.19e-09,34;UBERON:0002020,1.19e-09,34;UBERON:0002346,2.77e-09,86;UBERON:0003075,4.46e-09,82;UBERON:0007284,4.46e-09,82;UBERON:0002791,7.77e-09,32;UBERON:0006853,3.26e-08,3;UBERON:0007685,3.26e-08,3;UBERON:0004134,3.26e-08,3;UBERON:0001893,3.79e-08,34;UBERON:0004121,4.53e-08,171;UBERON:0000924,4.53e-08,171;UBERON:0006601,4.53e-08,171;UBERON:0003056,4.65e-08,61;UBERON:0010371,2.04e-07,104;UBERON:0011216,2.16e-07,223;UBERON:0001869,2.32e-07,32 | |||
|phase1_expression=0.54503513781167,0.214100523890983,0.704772020479856,0,0,1.74467704820074,0,0,0,0.245733936501509,1.39560233594486,1.31064823278103,0.263766978228454,0.123766352960047,0.331397375727916,0.672325146451775,0,0.730310090387373,0.975865597581014,0.369363174230364,0.612002073732759,0.313454721478088,0.286235987131057,0.684372125364421,0.627713197974014,0.764134057479513,0.328402357799783,0.393553906568396,0.393364276848904,0,0.309632246632152,0,0.30120591877825,0.369754010166788,0.697204805222715,2.13253848731132,0.293600439334847,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0,0.209658645508376,0.112328631146495,0,0,0,0,0,1.75996244461323,0,0,1.28019066769952,0.400395987036012,0.574752439954483,0,0.954053754535364,1.1384259382189,0,1.14681968437569,0,0,0,0.393419540227666,0.786021525498329,1.23360899399706,0.334372990781356,0.651844533267181,0.473447805734733,0,0.445641827540694,0.589211814949674,0.221533894583621,0,0.512365278902701,0.260118695119756,0.493313713811028,0.552700035571697,0.289803085735052,0.593146252648242,0,0,0.453237370790265,0,0,0.253019692019503,0,0,0,0.301150238155546,0.127986611154418,0,0,0.821127996921047,0.201606743224732,1.06976078313403,0.434473211648397,0,1.34140171940727,0,0,1.00267582127178,0,0.795285947051099,0,0.378139268656271,0.665188192387692,0.527008714158756,0.327447688744282,0,1.48313777113772,0,0,0,0,0,0,0,0.860234595106124,0,0,0,0.275118041940067,0,0.775250277507987,0,0,0.805658634218294,0,0.488124115096339,0,0,0.892997282840798,0.44905874525234,0.112611480483322,0,0,0.549605231791222,0,0,0,0,0.12663051166458,0.132409180813219,0.286836620748814,0,0,0,0.49333509683432,0.311211035399766,0.538842688278752,0,0.151357427644931,0,0.70296429550139,0.312160076830321,0,0.149448680551801,0,0.647491777472526,0.561803226808994,0,0.982674538494144,0.413303124703062,0,0,0,0,0.336672227908132,0,0.277064115484183,0,0.30648779579902,0,0.226864366320042,0.538168907066586,0.427114777637135,0,0.600182192168805,0.206105058476878,0.515281080091258,0,0.168776332241266,0.0974370051611986,0.252433774244115,0.184099797284599,0,0,0,0.169560592310488,0,0,0,0.121973706129595,0.530119073285941,0.232387885739037,0.414644220061482,0.756962552626885,0.72995471815166,0,1.92972281457866,0,0,0,0.473227200159376,0.674338760312407,0.482022059766964,1.21323370005633,1.30727666455444,1.18635309555548,0.674156540800822,1.37355025587742,0,0.738155454624648,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0.737930631258681,0.171567810298526,0.439001141634502,0,0.402115889646523,0.185176890317059,0.651616610620649,0,0,1.04337364477569,0.117408694235822,0,0,0.761016608938393,0,0,0,0.234004265139238,0,0,0.16798212819886,0,0.895585227028483,0.290633938513962,0.766765358330422,0,0,0.207328115540772,0.144119953416961,0.25248486685276,0.507983154337352,1.52795370223311,1.17217447210047,0,0,1.50171528921959,0.857479297891735,0,0,0,0.129271715757778,0,1.690605505112,0,0,1.02882949704857,0,0.266422179016099,0.142977993658148,0,0.823240336780769,0,0,0.791951872933429,0.301439377059586,0,0.199945982364114,0,0,0,0,0,0,0.144781306667579,0,0,0.560425719967636,0,0.215627574859517,0.898401253958239,0,0,3.09315525111078,2.01019518401218,1.91381625495949,0,0,0,0.12269149171914,0,0.542530047399471,2.07970861530807,0.356857977594324,1.41932173530541,0.234282829985426,0,0,0,0,0,0,0,0,0,0.215714200818617,0,0,0,0.30239029332968,0.496215615637554,0.306923946576125,0.280660094433074,0.256278298511402,1.02341449813341,0,0,0.308419387605311,0.355123450626254,0.492762936082855,1.55776328755086,0.464841513839837,0.483437798366489,0.40101294060657,0.276242966807689,0,0,0.131124414959424,0,0,0,2.92278449306521,0.73886140225013,0,0,0.215915916102139,0,0.812839312631559,1.00337954770971,7.13653564526107,14.959368160717,2.46262230194396,0.219259876645935,0.261435451024901,0.769350375349168,0,0.650756789328606,0.309123034943167,0.183138929636687,0.330037999682352,0.574265537996172,0.650060246036521,0,0,0.154048617114644,0.15350367472613,0.137836572484531,0.214840489736547,0.145016693914229,0.511359764496605,0,0.165284915360978,0,0.638063562472921,0.50578890427775,0,0,0,0,0,0,0,0,0,0.632758849437452,0,0,0.855877976067841,0,0,0.179872457583315,0,0.117812402345686,0.606547444719948,0,0,0.48763373908959,0,1.05650146756755,0.409499734223957,0.424216295861138,0,0.551365343546124,0,0.438450885253763,1.15755106853338,1.31178950409327,0,0,0,0.143411352204052,0.0982490410131212,0,0.354761064070598,0.422215270595328,0.329294892959902,0.379473173765715,0,0.0962221127255121,0,1.08890984861323,0.564862804660675,1.29151611801369,0,0,0,0,0.764637207142375,0,0.714695326373367,0.411362273086194,0,1.08006287447623,0.79312517629427,0.427296284509893,0,1.22520107990516,0,0.865615277858669,0.284567373393656,0.318852545457645,0.399158742865633,0,0,0.973865820823666,0.561594356226918,0.228234679033192,0,0,0,0.1605880751037,0.80719882876419,0,0,0,0,0.166849141711909,0.586164286206121,0,0,0.2704556784759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| ||
|short_description=p@chr6:30895835..30895839,+ | |||
}} | }} |
Latest revision as of 23:47, 30 July 2015
Short description: | p@chr6:30895835..30895839, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr6:30895835..30895839, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 1.96e-09 | 6 |
neuroblast | 1.96e-09 | 6 |
electrically signaling cell | 1.96e-09 | 6 |
brush border epithelial cell | 3.26e-08 | 3 |
kidney cortex tubule cell | 3.26e-08 | 3 |
epithelial cell of proximal tubule | 3.26e-08 | 3 |
neuronal stem cell | 6.01e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.35e-13 | 81 |
nervous system | 1.48e-12 | 89 |
neural tube | 4.99e-12 | 56 |
neural rod | 4.99e-12 | 56 |
future spinal cord | 4.99e-12 | 56 |
neural keel | 4.99e-12 | 56 |
regional part of nervous system | 1.40e-11 | 53 |
regional part of brain | 1.40e-11 | 53 |
regional part of forebrain | 7.16e-10 | 41 |
forebrain | 7.16e-10 | 41 |
anterior neural tube | 7.16e-10 | 41 |
future forebrain | 7.16e-10 | 41 |
brain | 1.04e-09 | 68 |
future brain | 1.04e-09 | 68 |
brain grey matter | 1.19e-09 | 34 |
gray matter | 1.19e-09 | 34 |
neurectoderm | 2.77e-09 | 86 |
neural plate | 4.46e-09 | 82 |
presumptive neural plate | 4.46e-09 | 82 |
regional part of telencephalon | 7.77e-09 | 32 |
renal cortex tubule | 3.26e-08 | 3 |
region of nephron tubule | 3.26e-08 | 3 |
proximal tubule | 3.26e-08 | 3 |
telencephalon | 3.79e-08 | 34 |
ectoderm-derived structure | 4.53e-08 | 171 |
ectoderm | 4.53e-08 | 171 |
presumptive ectoderm | 4.53e-08 | 171 |
pre-chordal neural plate | 4.65e-08 | 61 |
ecto-epithelium | 2.04e-07 | 104 |
organ system subdivision | 2.16e-07 | 223 |
cerebral hemisphere | 2.32e-07 | 32 |