FFCP PHASE1:Hg19::chr7:29900130..29900140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr7:29900130..29900140,+ | |||
|coexpression_cluster_id=C430 | |||
|description=CAGE_peak_at_chr7:29900130..29900140,+ | |description=CAGE_peak_at_chr7:29900130..29900140,+ | ||
|id=chr7:29900130..29900140,+ | |id=chr7:29900130..29900140,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.37e-29;1!UBERON:0006241;9.90e-11;3!UBERON:0003056;9.90e-11;3!UBERON:0003057;9.90e-11;3!UBERON:0006601;1.35e-07;82 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:1909;2.05e-15;2 | |||
|ontology_enrichment_disease_v019_2=DOID:1909,2.74e-15,2 | |||
|ontology_enrichment_uberon=UBERON:0001049!4.99e-60!57;UBERON:0005068!4.99e-60!57;UBERON:0006241!4.99e-60!57;UBERON:0007135!4.99e-60!57;UBERON:0002616!4.11e-45!59;UBERON:0001017!9.80e-43!82;UBERON:0003075!4.82e-41!86;UBERON:0007284!4.82e-41!86;UBERON:0002020!8.74e-41!34;UBERON:0003528!8.74e-41!34;UBERON:0005743!1.66e-40!86;UBERON:0000073!4.03e-39!94;UBERON:0001016!4.03e-39!94;UBERON:0002346!5.82e-39!90;UBERON:0002780!1.21e-37!41;UBERON:0001890!1.21e-37!41;UBERON:0006240!1.21e-37!41;UBERON:0002791!1.59e-37!33;UBERON:0000955!2.99e-37!69;UBERON:0006238!2.99e-37!69;UBERON:0003080!1.15e-36!42;UBERON:0001893!2.41e-36!34;UBERON:0002619!1.04e-32!22;UBERON:0001950!1.12e-30!20;UBERON:0001869!1.64e-29!32;UBERON:0007023!1.86e-29!115;UBERON:0000956!1.28e-28!25;UBERON:0000203!1.28e-28!25;UBERON:0003076!4.65e-25!15;UBERON:0003057!4.65e-25!15;UBERON:0003056!4.24e-24!61;UBERON:0004121!1.26e-22!169;UBERON:0000924!5.87e-22!173;UBERON:0006601!5.87e-22!173;UBERON:0002298!8.32e-22!8;UBERON:0000033!1.36e-20!123;UBERON:0000153!2.19e-19!129;UBERON:0007811!2.19e-19!129;UBERON:0004732!1.24e-17!13;UBERON:0002240!5.73e-16!3;UBERON:0006331!8.15e-16!3;UBERON:0000988!3.11e-15!3;UBERON:0001871!5.55e-15!7;UBERON:0004733!5.07e-14!12;UBERON:0002028!5.07e-14!12;UBERON:0007277!5.07e-14!12;UBERON:0002308!1.43e-13!9;UBERON:0000125!1.43e-13!9;UBERON:0000025!1.57e-13!194;UBERON:0000200!1.78e-13!6;UBERON:0005162!1.33e-11!2;UBERON:0000122!1.33e-11!2;UBERON:0002148!7.83e-11!2;UBERON:0009662!7.83e-11!2;UBERON:0001870!9.09e-11!2;UBERON:0004111!9.75e-11!241;UBERON:0000483!2.17e-10!309;UBERON:0000119!3.18e-10!312;UBERON:0005174!9.02e-10!5;UBERON:0001137!9.02e-10!5;UBERON:0001872!3.16e-09!5;UBERON:0000349!3.45e-09!5;UBERON:0002420!6.07e-09!9;UBERON:0007245!6.07e-09!9;UBERON:0010009!6.07e-09!9;UBERON:0010011!6.07e-09!9;UBERON:0000454!6.07e-09!9;UBERON:0002680!9.42e-09!9;UBERON:0001895!9.42e-09!9;UBERON:0010092!9.42e-09!9;UBERON:0000477!4.39e-08!286;UBERON:0000475!1.02e-07!365;UBERON:0001896!1.75e-07!3;UBERON:0005290!1.75e-07!3;UBERON:0010096!1.75e-07!3;UBERON:0002771!1.99e-07!3;UBERON:0000064!2.04e-07!219;UBERON:0009663!6.59e-07!7 | |ontology_enrichment_uberon=UBERON:0001049!4.99e-60!57;UBERON:0005068!4.99e-60!57;UBERON:0006241!4.99e-60!57;UBERON:0007135!4.99e-60!57;UBERON:0002616!4.11e-45!59;UBERON:0001017!9.80e-43!82;UBERON:0003075!4.82e-41!86;UBERON:0007284!4.82e-41!86;UBERON:0002020!8.74e-41!34;UBERON:0003528!8.74e-41!34;UBERON:0005743!1.66e-40!86;UBERON:0000073!4.03e-39!94;UBERON:0001016!4.03e-39!94;UBERON:0002346!5.82e-39!90;UBERON:0002780!1.21e-37!41;UBERON:0001890!1.21e-37!41;UBERON:0006240!1.21e-37!41;UBERON:0002791!1.59e-37!33;UBERON:0000955!2.99e-37!69;UBERON:0006238!2.99e-37!69;UBERON:0003080!1.15e-36!42;UBERON:0001893!2.41e-36!34;UBERON:0002619!1.04e-32!22;UBERON:0001950!1.12e-30!20;UBERON:0001869!1.64e-29!32;UBERON:0007023!1.86e-29!115;UBERON:0000956!1.28e-28!25;UBERON:0000203!1.28e-28!25;UBERON:0003076!4.65e-25!15;UBERON:0003057!4.65e-25!15;UBERON:0003056!4.24e-24!61;UBERON:0004121!1.26e-22!169;UBERON:0000924!5.87e-22!173;UBERON:0006601!5.87e-22!173;UBERON:0002298!8.32e-22!8;UBERON:0000033!1.36e-20!123;UBERON:0000153!2.19e-19!129;UBERON:0007811!2.19e-19!129;UBERON:0004732!1.24e-17!13;UBERON:0002240!5.73e-16!3;UBERON:0006331!8.15e-16!3;UBERON:0000988!3.11e-15!3;UBERON:0001871!5.55e-15!7;UBERON:0004733!5.07e-14!12;UBERON:0002028!5.07e-14!12;UBERON:0007277!5.07e-14!12;UBERON:0002308!1.43e-13!9;UBERON:0000125!1.43e-13!9;UBERON:0000025!1.57e-13!194;UBERON:0000200!1.78e-13!6;UBERON:0005162!1.33e-11!2;UBERON:0000122!1.33e-11!2;UBERON:0002148!7.83e-11!2;UBERON:0009662!7.83e-11!2;UBERON:0001870!9.09e-11!2;UBERON:0004111!9.75e-11!241;UBERON:0000483!2.17e-10!309;UBERON:0000119!3.18e-10!312;UBERON:0005174!9.02e-10!5;UBERON:0001137!9.02e-10!5;UBERON:0001872!3.16e-09!5;UBERON:0000349!3.45e-09!5;UBERON:0002420!6.07e-09!9;UBERON:0007245!6.07e-09!9;UBERON:0010009!6.07e-09!9;UBERON:0010011!6.07e-09!9;UBERON:0000454!6.07e-09!9;UBERON:0002680!9.42e-09!9;UBERON:0001895!9.42e-09!9;UBERON:0010092!9.42e-09!9;UBERON:0000477!4.39e-08!286;UBERON:0000475!1.02e-07!365;UBERON:0001896!1.75e-07!3;UBERON:0005290!1.75e-07!3;UBERON:0010096!1.75e-07!3;UBERON:0002771!1.99e-07!3;UBERON:0000064!2.04e-07!219;UBERON:0009663!6.59e-07!7 | ||
|ontology_enrichment_uberon_v019=UBERON:0005162;8.46e-57;2!UBERON:0000122;8.46e-57;2!UBERON:0002336;2.37e-29;1!UBERON:0002038;2.37e-29;1!UBERON:0000941;2.37e-29;1!UBERON:0001785;2.37e-29;1!UBERON:0002464;2.37e-29;1!UBERON:0004904;2.37e-29;1!UBERON:0011215;2.37e-29;1!UBERON:0001018;2.37e-29;1!UBERON:0001021;2.37e-29;1!UBERON:0009661;2.37e-29;1!UBERON:0002950;2.37e-29;1!UBERON:0002473;2.37e-29;1!UBERON:0005340;2.37e-29;1!UBERON:0003544;2.37e-29;1!UBERON:0005970;2.37e-29;1!UBERON:0002316;2.37e-29;1!UBERON:0001020;2.37e-29;1!UBERON:0001891;2.37e-29;1!UBERON:0002437;2.37e-29;1!UBERON:0003714;2.05e-15;2!UBERON:0002240;9.90e-11;3!UBERON:0005174;9.90e-11;3!UBERON:0001137;9.90e-11;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005162,1.13e-56,2;UBERON:0000122,1.13e-56,2;UBERON:0002038,1.33e-29,1;UBERON:0009661,1.33e-29,1;UBERON:0002950,1.33e-29,1;UBERON:0001891,1.33e-29,1;UBERON:0009616,1.33e-29,1;UBERON:0010286,1.33e-29,1;UBERON:0000941,2.37e-29,1;UBERON:0001785,2.37e-29,1;UBERON:0002464,2.37e-29,1;UBERON:0004904,2.37e-29,1;UBERON:0001021,2.37e-29,1;UBERON:0003902,2.37e-29,1;UBERON:0005425,2.37e-29,1;UBERON:0002336,3.16e-29,1;UBERON:0011215,3.16e-29,1;UBERON:0001018,3.16e-29,1;UBERON:0002473,3.16e-29,1;UBERON:0005340,3.16e-29,1;UBERON:0003544,3.16e-29,1;UBERON:0005970,3.16e-29,1;UBERON:0002316,3.16e-29,1;UBERON:0001020,3.16e-29,1;UBERON:0002437,3.16e-29,1;UBERON:0003714,2.05e-15,2;UBERON:0002240,8.99e-11,3;UBERON:0005174,8.99e-11,3;UBERON:0001137,8.99e-11,3;UBERON:0001781,2.26e-08,4;UBERON:0010371,5.06e-07,104 | |||
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|short_description=p@chr7:29900130..29900140,+ | |short_description=p@chr7:29900130..29900140,+ | ||
}} | }} |
Latest revision as of 09:17, 31 July 2015
Short description: | p@chr7:29900130..29900140, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr7:29900130..29900140, + |
Coexpression cluster: | C430_acute_giant_chronic_CD34_CD133_melanoma_skeletal |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi cell component structure | 1.13e-56 | 2 |
neuron projection bundle | 1.13e-56 | 2 |
substantia nigra | 1.33e-29 | 1 |
midbrain nucleus | 1.33e-29 | 1 |
regional part of midbrain | 1.33e-29 | 1 |
midbrain | 1.33e-29 | 1 |
presumptive midbrain | 1.33e-29 | 1 |
midbrain neural tube | 1.33e-29 | 1 |
cranial nerve II | 2.37e-29 | 1 |
cranial nerve | 2.37e-29 | 1 |
nerve trunk | 2.37e-29 | 1 |
nerve connecting eye with brain | 2.37e-29 | 1 |
nerve | 2.37e-29 | 1 |
retinal neural layer | 2.37e-29 | 1 |
presumptive neural retina | 2.37e-29 | 1 |
corpus callosum | 3.16e-29 | 1 |
central nervous system cell part cluster | 3.16e-29 | 1 |
axon tract | 3.16e-29 | 1 |
intercerebral commissure | 3.16e-29 | 1 |
dorsal telencephalic commissure | 3.16e-29 | 1 |
brain white matter | 3.16e-29 | 1 |
brain commissure | 3.16e-29 | 1 |
white matter | 3.16e-29 | 1 |
nervous system commissure | 3.16e-29 | 1 |
cerebral hemisphere white matter | 3.16e-29 | 1 |
neural tissue | 2.05e-15 | 2 |
spinal cord | 8.99e-11 | 3 |
dorsal region element | 8.99e-11 | 3 |
dorsum | 8.99e-11 | 3 |
layer of retina | 2.26e-08 | 4 |
ecto-epithelium | 5.06e-07 | 104 |
Ontology term | p-value | n |
---|---|---|
melanoma | 2.74e-15 | 2 |