FFCP PHASE1:Hg19::chr8:102681493..102681497,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:102681493..102681497,+ | |||
|coexpression_cluster_id=C1541 | |coexpression_cluster_id=C1541 | ||
|description=CAGE_peak_at_chr8:102681493..102681497,+ | |description=CAGE_peak_at_chr8:102681493..102681497,+ | ||
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|ontology_enrichment_celltype=CL:0000066!1.30e-22!254;CL:0002076!4.13e-20!43;CL:0000223!7.51e-15!59;CL:0002368!1.71e-10!13;CL:0002251!1.79e-08!21;CL:0002202!3.66e-07!9;CL:0002632!3.66e-07!9 | |ontology_enrichment_celltype=CL:0000066!1.30e-22!254;CL:0002076!4.13e-20!43;CL:0000223!7.51e-15!59;CL:0002368!1.71e-10!13;CL:0002251!1.79e-08!21;CL:0002202!3.66e-07!9;CL:0002632!3.66e-07!9 | ||
|ontology_enrichment_celltype_v019=CL:0002076;4.69e-21;42!CL:0002368;1.28e-13;13!CL:0002251;7.64e-11;20!CL:0002202;2.81e-09;9!CL:0002632;2.81e-09;9!CL:0000349;2.93e-09;19!CL:0002322;4.92e-07;5 | |ontology_enrichment_celltype_v019=CL:0002076;4.69e-21;42!CL:0002368;1.28e-13;13!CL:0002251;7.64e-11;20!CL:0002202;2.81e-09;9!CL:0002632;2.81e-09;9!CL:0000349;2.93e-09;19!CL:0002322;4.92e-07;5 | ||
|ontology_enrichment_celltype_v019_2=CL:0002076,6.65e-27,42;CL:0000066,8.66e-25,253;CL:0000223,8.83e-20,58;CL:0002368,1.36e-13,13;CL:0002251,7.96e-11,20;CL:0000349,2.78e-09,19;CL:0002202,3.61e-09,9;CL:0002632,3.61e-09,9;CL:0002322,6.95e-07,5 | |||
|ontology_enrichment_development_v019=CL:0000223;4.94e-10;58 | |ontology_enrichment_development_v019=CL:0000223;4.94e-10;58 | ||
|ontology_enrichment_disease=DOID:305!2.37e-16!106;DOID:1749!7.32e-16!14;DOID:0050687!2.05e-11!143;DOID:299!2.29e-09!25 | |ontology_enrichment_disease=DOID:305!2.37e-16!106;DOID:1749!7.32e-16!14;DOID:0050687!2.05e-11!143;DOID:299!2.29e-09!25 | ||
|ontology_enrichment_disease_v019=DOID:1749;3.34e-18;14!DOID:299;4.84e-09;25 | |ontology_enrichment_disease_v019=DOID:1749;3.34e-18;14!DOID:299;4.84e-09;25 | ||
|ontology_enrichment_disease_v019_2=DOID:1749,2.34e-18,14;DOID:305,5.37e-15,106;DOID:0050687,4.42e-10,143;DOID:299,4.39e-09,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!1.54e-23!169;UBERON:0000925!1.54e-23!169;UBERON:0006595!1.54e-23!169;UBERON:0001007!8.63e-17!155;UBERON:0001555!8.63e-17!155;UBERON:0007026!8.63e-17!155;UBERON:0001004!3.46e-13!72;UBERON:0000077!3.78e-13!130;UBERON:0004921!5.07e-13!129;UBERON:0004185!5.07e-13!129;UBERON:0005631!1.94e-12!14;UBERON:0000158!1.94e-12!14;UBERON:0000464!2.08e-11!104;UBERON:0005911!7.06e-11!82;UBERON:0000466!4.17e-10!126;UBERON:0000065!1.88e-09!53;UBERON:0000344!3.62e-09!12;UBERON:0003124!4.47e-09!7;UBERON:0005153!4.57e-09!37;UBERON:0000161!6.20e-09!35;UBERON:0005181!1.71e-08!35;UBERON:0005178!5.23e-08!34;UBERON:0002224!5.23e-08!34;UBERON:0005156!1.03e-07!59;UBERON:0000990!1.03e-07!59;UBERON:0000478!1.25e-07!24;UBERON:0001041!1.27e-07!98;UBERON:0003729!1.88e-07!5;UBERON:0000915!2.19e-07!52;UBERON:0004175!5.85e-07!25;UBERON:0004923!8.40e-07!57 | |ontology_enrichment_uberon=UBERON:0004119!1.54e-23!169;UBERON:0000925!1.54e-23!169;UBERON:0006595!1.54e-23!169;UBERON:0001007!8.63e-17!155;UBERON:0001555!8.63e-17!155;UBERON:0007026!8.63e-17!155;UBERON:0001004!3.46e-13!72;UBERON:0000077!3.78e-13!130;UBERON:0004921!5.07e-13!129;UBERON:0004185!5.07e-13!129;UBERON:0005631!1.94e-12!14;UBERON:0000158!1.94e-12!14;UBERON:0000464!2.08e-11!104;UBERON:0005911!7.06e-11!82;UBERON:0000466!4.17e-10!126;UBERON:0000065!1.88e-09!53;UBERON:0000344!3.62e-09!12;UBERON:0003124!4.47e-09!7;UBERON:0005153!4.57e-09!37;UBERON:0000161!6.20e-09!35;UBERON:0005181!1.71e-08!35;UBERON:0005178!5.23e-08!34;UBERON:0002224!5.23e-08!34;UBERON:0005156!1.03e-07!59;UBERON:0000990!1.03e-07!59;UBERON:0000478!1.25e-07!24;UBERON:0001041!1.27e-07!98;UBERON:0003729!1.88e-07!5;UBERON:0000915!2.19e-07!52;UBERON:0004175!5.85e-07!25;UBERON:0004923!8.40e-07!57 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;5.11e-11;10!UBERON:0000158;5.11e-11;10!UBERON:0000344;3.34e-10;20!UBERON:0000974;1.22e-09;6!UBERON:0000478;2.04e-09;24!UBERON:0005911;1.32e-08;36!UBERON:0003343;5.96e-08;4!UBERON:0004785;5.96e-08;4!UBERON:0007196;7.03e-08;15!UBERON:0001558;7.03e-08;15!UBERON:0002294;1.22e-07;7!UBERON:0001173;1.22e-07;7!UBERON:0004807;3.39e-07;22!UBERON:0000365;3.50e-07;5!UBERON:0001987;4.99e-07;4!UBERON:0003729;8.33e-07;13!UBERON:0000305;8.38e-07;7 | |ontology_enrichment_uberon_v019=UBERON:0005631;5.11e-11;10!UBERON:0000158;5.11e-11;10!UBERON:0000344;3.34e-10;20!UBERON:0000974;1.22e-09;6!UBERON:0000478;2.04e-09;24!UBERON:0005911;1.32e-08;36!UBERON:0003343;5.96e-08;4!UBERON:0004785;5.96e-08;4!UBERON:0007196;7.03e-08;15!UBERON:0001558;7.03e-08;15!UBERON:0002294;1.22e-07;7!UBERON:0001173;1.22e-07;7!UBERON:0004807;3.39e-07;22!UBERON:0000365;3.50e-07;5!UBERON:0001987;4.99e-07;4!UBERON:0003729;8.33e-07;13!UBERON:0000305;8.38e-07;7 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,9.31e-22,160;UBERON:0000925,9.31e-22,160;UBERON:0006595,9.31e-22,160;UBERON:0005631,2.30e-16,14;UBERON:0000158,2.30e-16,14;UBERON:0001007,3.50e-14,145;UBERON:0001555,3.50e-14,145;UBERON:0007026,3.50e-14,145;UBERON:0003124,1.52e-11,7;UBERON:0001004,5.60e-11,74;UBERON:0005911,1.20e-10,82;UBERON:0000344,3.05e-10,20;UBERON:0004921,6.08e-10,118;UBERON:0005153,8.86e-10,37;UBERON:0000478,1.95e-09,24;UBERON:0004923,1.00e-08,66;UBERON:0005157,1.19e-08,47;UBERON:0000065,1.57e-08,54;UBERON:0000161,4.93e-08,36;UBERON:0003343,6.29e-08,4;UBERON:0004785,6.29e-08,4;UBERON:0007196,8.29e-08,15;UBERON:0001558,8.29e-08,15;UBERON:0005178,2.02e-07,34;UBERON:0002224,2.02e-07,34;UBERON:0000365,2.61e-07,5;UBERON:0005181,4.26e-07,35;UBERON:0001987,4.41e-07,4;UBERON:0004340,4.41e-07,4;UBERON:0000305,8.16e-07,7;UBERON:0003729,9.14e-07,13 | |||
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| ||
|short_description=p@chr8:102681493..102681497,+ | |short_description=p@chr8:102681493..102681497,+ | ||
}} | }} |
Latest revision as of 13:36, 31 July 2015
Short description: | p@chr8:102681493..102681497, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:102681493..102681497, + |
Coexpression cluster: | C1541_amniotic_Amniotic_MCF7_Placental_chorionic_oral_acantholytic |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 6.65e-27 | 42 |
epithelial cell | 8.66e-25 | 253 |
endodermal cell | 8.83e-20 | 58 |
respiratory epithelial cell | 1.36e-13 | 13 |
epithelial cell of alimentary canal | 7.96e-11 | 20 |
extraembryonic cell | 2.78e-09 | 19 |
epithelial cell of tracheobronchial tree | 3.61e-09 | 9 |
epithelial cell of lower respiratory tract | 3.61e-09 | 9 |
embryonic stem cell | 6.95e-07 | 5 |
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 9.31e-22 | 160 |
endoderm | 9.31e-22 | 160 |
presumptive endoderm | 9.31e-22 | 160 |
extraembryonic membrane | 2.30e-16 | 14 |
membranous layer | 2.30e-16 | 14 |
digestive system | 3.50e-14 | 145 |
digestive tract | 3.50e-14 | 145 |
primitive gut | 3.50e-14 | 145 |
chorion | 1.52e-11 | 7 |
respiratory system | 5.60e-11 | 74 |
endo-epithelium | 1.20e-10 | 82 |
mucosa | 3.05e-10 | 20 |
subdivision of digestive tract | 6.08e-10 | 118 |
epithelial bud | 8.86e-10 | 37 |
extraembryonic structure | 1.95e-09 | 24 |
organ component layer | 1.00e-08 | 66 |
epithelial fold | 1.19e-08 | 47 |
respiratory tract | 1.57e-08 | 54 |
orifice | 4.93e-08 | 36 |
mucosa of oral region | 6.29e-08 | 4 |
respiratory system mucosa | 6.29e-08 | 4 |
tracheobronchial tree | 8.29e-08 | 15 |
lower respiratory tract | 8.29e-08 | 15 |
thoracic cavity element | 2.02e-07 | 34 |
thoracic cavity | 2.02e-07 | 34 |
urothelium | 2.61e-07 | 5 |
thoracic segment organ | 4.26e-07 | 35 |
placenta | 4.41e-07 | 4 |
allantois | 4.41e-07 | 4 |
amnion | 8.16e-07 | 7 |
mouth mucosa | 9.14e-07 | 13 |
Ontology term | p-value | n |
---|---|---|
squamous cell carcinoma | 2.34e-18 | 14 |
carcinoma | 5.37e-15 | 106 |
cell type cancer | 4.42e-10 | 143 |
adenocarcinoma | 4.39e-09 | 25 |