FFCP PHASE1:Hg19::chr8:120608233..120608244,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr8:120608233..120608244,- | |||
|description=CAGE_peak_at_chr8:120608233..120608244,- | |description=CAGE_peak_at_chr8:120608233..120608244,- | ||
|id=chr8:120608233..120608244,- | |id=chr8:120608233..120608244,- | ||
|ontology_enrichment_celltype=CL:0000057!1.52e-14!75;CL:0002620!2.54e-13!23;CL:0000135!1.85e-09!3;CL:0000386!1.85e-09!3;CL:0000388!1.85e-09!3;CL:0000055!4.40e-09!180;CL:0002564!1.68e-08!3;CL:0002570!3.26e-08!8;CL:0000594!9.01e-08!3;CL:0002320!7.47e-07!365 | |ontology_enrichment_celltype=CL:0000057!1.52e-14!75;CL:0002620!2.54e-13!23;CL:0000135!1.85e-09!3;CL:0000386!1.85e-09!3;CL:0000388!1.85e-09!3;CL:0000055!4.40e-09!180;CL:0002564!1.68e-08!3;CL:0002570!3.26e-08!8;CL:0000594!9.01e-08!3;CL:0002320!7.47e-07!365 | ||
|ontology_enrichment_celltype_v019=CL:0000135;4.20e-66;3!CL:0000388;4.20e-66;3!CL:0000499;4.96e-13;28!CL:0000214;9.31e-09;3!CL:0002564;1.26e-08;3!CL:0002582;1.26e-08;3 | |ontology_enrichment_celltype_v019=CL:0000135;4.20e-66;3!CL:0000388;4.20e-66;3!CL:0000499;4.96e-13;28!CL:0000214;9.31e-09;3!CL:0002564;1.26e-08;3!CL:0002582;1.26e-08;3 | ||
|ontology_enrichment_celltype_v019_2=CL:0000135,2.41e-66,3;CL:0000388,2.41e-66,3;CL:0000499,4.66e-13,28;CL:0000214,9.66e-09,3;CL:0002564,1.12e-08,3;CL:0002582,1.40e-08,3;CL:0000057,2.19e-07,76 | |||
|ontology_enrichment_development_v019=UBERON:0005425;3.67e-23;1!UBERON:0003056;1.26e-08;3 | |ontology_enrichment_development_v019=UBERON:0005425;3.67e-23;1!UBERON:0003056;1.26e-08;3 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000043!1.85e-09!3;UBERON:0004905!3.92e-09!5;UBERON:0000982!3.92e-09!5;UBERON:0004770!3.92e-09!5;UBERON:0002242!1.68e-08!3;UBERON:0003068!1.68e-08!3;UBERON:0002328!1.68e-08!3;UBERON:0004880!1.68e-08!3;UBERON:0002097!8.16e-08!40;UBERON:0002199!9.29e-08!45;UBERON:0002416!9.29e-08!45 | |ontology_enrichment_uberon=UBERON:0000043!1.85e-09!3;UBERON:0004905!3.92e-09!5;UBERON:0000982!3.92e-09!5;UBERON:0004770!3.92e-09!5;UBERON:0002242!1.68e-08!3;UBERON:0003068!1.68e-08!3;UBERON:0002328!1.68e-08!3;UBERON:0004880!1.68e-08!3;UBERON:0002097!8.16e-08!40;UBERON:0002199!9.29e-08!45;UBERON:0002416!9.29e-08!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0007846;4.20e-66;3!UBERON:0000043;4.20e-66;3!UBERON:0007845;4.20e-66;3!UBERON:0000941;3.67e-23;1!UBERON:0001785;3.67e-23;1!UBERON:0002464;3.67e-23;1!UBERON:0004904;3.67e-23;1!UBERON:0001021;3.67e-23;1!UBERON:0003714;2.74e-12;2!UBERON:0005162;2.74e-12;2!UBERON:0000122;2.74e-12;2!UBERON:0004905;4.94e-12;8!UBERON:0000982;4.94e-12;8!UBERON:0004770;4.94e-12;8!UBERON:0006915;9.31e-09;3!UBERON:0007616;9.31e-09;3!UBERON:0002217;9.31e-09;3!UBERON:0002018;9.31e-09;3!UBERON:0002242;1.26e-08;3 | |ontology_enrichment_uberon_v019=UBERON:0007846;4.20e-66;3!UBERON:0000043;4.20e-66;3!UBERON:0007845;4.20e-66;3!UBERON:0000941;3.67e-23;1!UBERON:0001785;3.67e-23;1!UBERON:0002464;3.67e-23;1!UBERON:0004904;3.67e-23;1!UBERON:0001021;3.67e-23;1!UBERON:0003714;2.74e-12;2!UBERON:0005162;2.74e-12;2!UBERON:0000122;2.74e-12;2!UBERON:0004905;4.94e-12;8!UBERON:0000982;4.94e-12;8!UBERON:0004770;4.94e-12;8!UBERON:0006915;9.31e-09;3!UBERON:0007616;9.31e-09;3!UBERON:0002217;9.31e-09;3!UBERON:0002018;9.31e-09;3!UBERON:0002242;1.26e-08;3 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0007846,2.41e-66,3;UBERON:0000043,2.41e-66,3;UBERON:0007845,2.41e-66,3;UBERON:0000941,3.28e-23,1;UBERON:0001785,3.28e-23,1;UBERON:0002464,3.28e-23,1;UBERON:0004904,3.28e-23,1;UBERON:0001021,3.28e-23,1;UBERON:0003902,3.28e-23,1;UBERON:0005425,3.28e-23,1;UBERON:0003714,2.59e-12,2;UBERON:0005162,2.59e-12,2;UBERON:0000122,2.59e-12,2;UBERON:0004905,4.67e-12,8;UBERON:0000982,4.67e-12,8;UBERON:0004770,4.67e-12,8;UBERON:0006915,9.66e-09,3;UBERON:0007616,9.66e-09,3;UBERON:0002217,9.66e-09,3;UBERON:0002018,9.66e-09,3;UBERON:0002242,1.12e-08,3;UBERON:0003068,1.12e-08,3;UBERON:0002328,1.12e-08,3;UBERON:0004880,1.12e-08,3;UBERON:0001781,8.61e-07,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0,0.358779271377724,0.213557388818567,0,0,0.206105058476878,0.515281080091258,0.18611685633159,0.337552664482532,0.68205903612839,1.00973509697646,0.460249493211497,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,1.50051156317903,0.271265023699736,0.415941723061614,5.35286966391485,0.946214490203608,0,0,0,0,0,0,0.695068915744663,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0.177561725313127,0,0,1.04589340613963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,2.30506425071931,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.701139929541673,0.554805861502613,0,0.251567901752575,0.889811221596536,0,0.756154618816195,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,2.60396512716726,1.84870251452567,1.29787968637137,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0.994192127183747,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434377689410233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0.289693037921647,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0,0,0.354668382198357,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0.140450806702248,0,0,0.103325781175765,0,0.247266929278557,0,0,0,0,0,0,0.612975591598039,0.150238058906597,0,0.358779271377724,0.213557388818567,0,0,0.206105058476878,0.515281080091258,0.18611685633159,0.337552664482532,0.68205903612839,1.00973509697646,0.460249493211497,0,0.355009592516614,0,0,0,0,0,0,0,0,0,0,0,0,0.643240938192885,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24538298343828,1.50051156317903,0.271265023699736,0.415941723061614,5.35286966391485,0.946214490203608,0,0,0,0,0,0,0.695068915744663,0,0,0,0,0,0,0,0,0,0,0.280660094433074,0,0.511707249066704,0,0,0,0.177561725313127,0,0,1.04589340613963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.512900250232778,0,0,0,0,0,0,0,0,0.096670718292122,0.154048617114644,0,0,0.214840489736547,0.290033387828457,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.422215270595328,2.30506425071931,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123084805461069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.31900115973192,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.104421949505455,0,0,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0607495566580247,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.447764408660622,0.701139929541673,0.554805861502613,0,0.251567901752575,0.889811221596536,0,0.756154618816195,0,0,0,0,0,0,0,0,0,0,0,0.181848659202559,0,0,0,0,0.343395705182793,0.336749488765919,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.138258436151731,0,0,0,0,0.245772908753719,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.318004350653419,0,0,0,0,0.0642292250964595,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0.198916222116275,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115233987555779,0,0,0,0,0,0,0,0,0,0,0,0.0714765441766563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,2.60396512716726,1.84870251452567,1.29787968637137,0,0,0.126698501011437,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.332660356546013,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p@chr8:120608233..120608244,- | |short_description=p@chr8:120608233..120608244,- | ||
}} | }} |
Latest revision as of 14:25, 31 July 2015
Short description: | p@chr8:120608233..120608244, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr8:120608233..120608244, - |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibrocyte | 2.41e-66 | 3 |
tendon cell | 2.41e-66 | 3 |
stromal cell | 4.66e-13 | 28 |
synovial cell | 9.66e-09 | 3 |
nucleus pulposus cell of intervertebral disc | 1.12e-08 | 3 |
visceral preadipocyte | 1.40e-08 | 3 |
fibroblast | 2.19e-07 | 76 |
Ontology term | p-value | n |
---|---|---|
dense regular connective tissue | 2.41e-66 | 3 |
tendon | 2.41e-66 | 3 |
regular connective tissue | 2.41e-66 | 3 |
cranial nerve II | 3.28e-23 | 1 |
cranial nerve | 3.28e-23 | 1 |
nerve trunk | 3.28e-23 | 1 |
nerve connecting eye with brain | 3.28e-23 | 1 |
nerve | 3.28e-23 | 1 |
retinal neural layer | 3.28e-23 | 1 |
presumptive neural retina | 3.28e-23 | 1 |
neural tissue | 2.59e-12 | 2 |
multi cell component structure | 2.59e-12 | 2 |
neuron projection bundle | 2.59e-12 | 2 |
articulation | 4.67e-12 | 8 |
skeletal joint | 4.67e-12 | 8 |
articular system | 4.67e-12 | 8 |
stratified squamous epithelium | 9.66e-09 | 3 |
layer of synovial tissue | 9.66e-09 | 3 |
synovial joint | 9.66e-09 | 3 |
synovial membrane of synovial joint | 9.66e-09 | 3 |
nucleus pulposus | 1.12e-08 | 3 |
axial mesoderm | 1.12e-08 | 3 |
notochord | 1.12e-08 | 3 |
chordamesoderm | 1.12e-08 | 3 |
layer of retina | 8.61e-07 | 4 |