FFCP PHASE1:Mm9::chr12:80250931..80250971,+: Difference between revisions
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{{FFCP|EntrezGene=NA|HGNC=|MCL_coexpression_id=12|UniProt=NA|association_with_transcript=NA|description=CAGE_peak_at_chr12:80250931..80250971,+|id=chr12:80250931..80250971,+|ontology_enrichment_celltype=CL:0002563!3.68e-18!9;CL:0002251!3.68e-18!9;CL:0000239!2.04e-13!6;CL:0000677!2.04e-13!6;CL:0000212!2.04e-13!6;CL:0000584!2.04e-13!6;CL:0000075!2.28e-11!7;CL:0000066!3.15e-10!25;CL:0002076!3.99e-10!15;CL:0000473!6.43e-08!3;CL:0000627!6.43e-08!3;CL:0000682!6.43e-08!3;CL:0000223!3.92e-07!20|ontology_enrichment_celltype_v019_2=CL:0002563,3.42e-22,9;CL:0002251,3.42e-22,9;CL:0000239,5.58e-20,6;CL:0000677,5.58e-20,6;CL:0000584,5.58e-20,6;CL:0000075,4.84e-17,7;CL:0000066,3.00e-14,25;CL:0002076,7.80e-13,15;CL:0000682,1.93e-11,3;CL:0000223,2.54e-09,20;CL:0000473,4.82e-08,7|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000344!6.63e-30!15;UBERON:0001242!1.36e-25!13;UBERON:0000060!1.36e-25!13;UBERON:0001262!1.36e-25!13;UBERON:0004786!1.36e-25!13;UBERON:0000160!1.70e-20!43;UBERON:0003350!3.68e-18!9;UBERON:0004808!3.68e-18!9;UBERON:0001277!3.68e-18!9;UBERON:0004923!3.40e-17!24;UBERON:0005409!1.33e-14!59;UBERON:0000485!1.67e-14!11;UBERON:0000331!6.81e-07!3;UBERON:0002116!6.81e-07!3;UBERON:0001204!6.81e-07!3;UBERON:0001168!6.81e-07!3;UBERON:0001007!9.67e-07!128;UBERON:0001555!9.67e-07!128;UBERON:0007026!9.67e-07!128|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.70e-40,15;UBERON:0000160,7.12e-34,31;UBERON:0001242,1.15e-33,13;UBERON:0001262,1.15e-33,13;UBERON:0004786,1.15e-33,13;UBERON:0004923,3.92e-24,24;UBERON:0003350,3.42e-22,9;UBERON:0004808,3.42e-22,9;UBERON:0001277,3.42e-22,9;UBERON:0005409,4.72e-21,47;UBERON:0000485,6.09e-18,11;UBERON:0002108,1.39e-12,4;UBERON:0000331,7.45e-10,3;UBERON:0002116,7.45e-10,3;UBERON:0001204,7.45e-10,3;UBERON:0001168,7.45e-10,3;UBERON:0001007,2.62e-09,116;UBERON:0001555,2.62e-09,116;UBERON:0007026,2.62e-09,116;UBERON:0004119,4.46e-09,118;UBERON:0000925,4.46e-09,118;UBERON:0006595,4.46e-09,118;UBERON:0001962,3.68e-08,2;UBERON:0001961,3.68e-08,2;UBERON:0001744,3.68e-08,2;UBERON:0004921,2.55e-07,114|phase1_expression=0,27.2200817958702,26.3899558845931,15.1232105653415,21.0376206577466,9.06548068324205,10.7461814673942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.5185072903011,27.5291137280604,33.3054539186712,38.7685796543167,25.210134224249,4.56056206695297,8.31699428207772,3.10422714917427,0,0,0,1.1554064790051,1.66234645358492,0.204169356262369,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,10.7291963187608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.4509899408011,13.4869788998408,0,0,0,0,0,0,5.69434873853414,0.164698954724011,0.251335208800269,0,0.19496408711912,8.08937467788799,7.5648317456143,13.541606581297,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,3.01582567878545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66369338607761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0|short_description=p@chr12:80250931..80250971,+}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=NA | |||
|HGNC= | |||
|MCL_coexpression_id=12 | |||
|TSSclassifier=NA | |||
|UniProt=NA | |||
|association_with_transcript=NA | |||
|cluster_id=chr12:80250931..80250971,+ | |||
|description=CAGE_peak_at_chr12:80250931..80250971,+ | |||
|id=chr12:80250931..80250971,+ | |||
|ontology_enrichment_celltype=CL:0002563!3.68e-18!9;CL:0002251!3.68e-18!9;CL:0000239!2.04e-13!6;CL:0000677!2.04e-13!6;CL:0000212!2.04e-13!6;CL:0000584!2.04e-13!6;CL:0000075!2.28e-11!7;CL:0000066!3.15e-10!25;CL:0002076!3.99e-10!15;CL:0000473!6.43e-08!3;CL:0000627!6.43e-08!3;CL:0000682!6.43e-08!3;CL:0000223!3.92e-07!20 | |||
|ontology_enrichment_celltype_v019_2=CL:0002563,3.42e-22,9;CL:0002251,3.42e-22,9;CL:0000239,5.58e-20,6;CL:0000677,5.58e-20,6;CL:0000584,5.58e-20,6;CL:0000075,4.84e-17,7;CL:0000066,3.00e-14,25;CL:0002076,7.80e-13,15;CL:0000682,1.93e-11,3;CL:0000223,2.54e-09,20;CL:0000473,4.82e-08,7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000344!6.63e-30!15;UBERON:0001242!1.36e-25!13;UBERON:0000060!1.36e-25!13;UBERON:0001262!1.36e-25!13;UBERON:0004786!1.36e-25!13;UBERON:0000160!1.70e-20!43;UBERON:0003350!3.68e-18!9;UBERON:0004808!3.68e-18!9;UBERON:0001277!3.68e-18!9;UBERON:0004923!3.40e-17!24;UBERON:0005409!1.33e-14!59;UBERON:0000485!1.67e-14!11;UBERON:0000331!6.81e-07!3;UBERON:0002116!6.81e-07!3;UBERON:0001204!6.81e-07!3;UBERON:0001168!6.81e-07!3;UBERON:0001007!9.67e-07!128;UBERON:0001555!9.67e-07!128;UBERON:0007026!9.67e-07!128 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,2.70e-40,15;UBERON:0000160,7.12e-34,31;UBERON:0001242,1.15e-33,13;UBERON:0001262,1.15e-33,13;UBERON:0004786,1.15e-33,13;UBERON:0004923,3.92e-24,24;UBERON:0003350,3.42e-22,9;UBERON:0004808,3.42e-22,9;UBERON:0001277,3.42e-22,9;UBERON:0005409,4.72e-21,47;UBERON:0000485,6.09e-18,11;UBERON:0002108,1.39e-12,4;UBERON:0000331,7.45e-10,3;UBERON:0002116,7.45e-10,3;UBERON:0001204,7.45e-10,3;UBERON:0001168,7.45e-10,3;UBERON:0001007,2.62e-09,116;UBERON:0001555,2.62e-09,116;UBERON:0007026,2.62e-09,116;UBERON:0004119,4.46e-09,118;UBERON:0000925,4.46e-09,118;UBERON:0006595,4.46e-09,118;UBERON:0001962,3.68e-08,2;UBERON:0001961,3.68e-08,2;UBERON:0001744,3.68e-08,2;UBERON:0004921,2.55e-07,114 | |||
|phase1_expression=0,27.2200817958702,26.3899558845931,15.1232105653415,21.0376206577466,9.06548068324205,10.7461814673942,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,31.5185072903011,27.5291137280604,33.3054539186712,38.7685796543167,25.210134224249,4.56056206695297,8.31699428207772,3.10422714917427,0,0,0,1.1554064790051,1.66234645358492,0.204169356262369,0.418531630736908,0,0,0,0,0.485510353031154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202316460859598,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.294628585473668,0,0,0,0,0,0,0,0,0,0,1.12355536105401,0,0,0,0,0,0,0,0,0,0,1.25602267690966,0,0,0,0,0,0,0,0.125666591329675,0,0,0,0,0,0,0,0,0,10.7291963187608,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,24.4509899408011,13.4869788998408,0,0,0,0,0,0,5.69434873853414,0.164698954724011,0.251335208800269,0,0.19496408711912,8.08937467788799,7.5648317456143,13.541606581297,0,0,0,0,0,0.0701358198903186,0,0.147610147979602,0,0.246794327843601,0,0,0,0,0,0,0,0,0,0,1.43768206527355,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157635144106191,0,0,0,0,0,3.01582567878545,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329940245945071,0,0,0,0,0,0,0,0,0,0,0,0,0,0.18006109403131,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.66369338607761,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.134864346384821,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.116876902181569,0,0,0,0,0,0,0,0,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |||
|short_description=p@chr12:80250931..80250971,+ | |||
}} |
Latest revision as of 07:37, 5 August 2015
Short description: | p@chr12:80250931..80250971, + |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_at_chr12:80250931..80250971, + |
Coexpression cluster: | MCL_coexpression_mm9:12 |
Association with transcript: | NA |
EntrezGene: | NA |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 3.42e-22 | 9 |
epithelial cell of alimentary canal | 3.42e-22 | 9 |
brush border epithelial cell | 5.58e-20 | 6 |
gut absorptive cell | 5.58e-20 | 6 |
enterocyte | 5.58e-20 | 6 |
columnar/cuboidal epithelial cell | 4.84e-17 | 7 |
epithelial cell | 3.00e-14 | 25 |
endo-epithelial cell | 7.80e-13 | 15 |
M cell of gut | 1.93e-11 | 3 |
endodermal cell | 2.54e-09 | 20 |
defensive cell | 4.82e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 2.70e-40 | 15 |
intestine | 7.12e-34 | 31 |
intestinal mucosa | 1.15e-33 | 13 |
wall of intestine | 1.15e-33 | 13 |
gastrointestinal system mucosa | 1.15e-33 | 13 |
organ component layer | 3.92e-24 | 24 |
epithelium of mucosa | 3.42e-22 | 9 |
gastrointestinal system epithelium | 3.42e-22 | 9 |
intestinal epithelium | 3.42e-22 | 9 |
gastrointestinal system | 4.72e-21 | 47 |
simple columnar epithelium | 6.09e-18 | 11 |
small intestine | 1.39e-12 | 4 |
ileal mucosa | 7.45e-10 | 3 |
ileum | 7.45e-10 | 3 |
mucosa of small intestine | 7.45e-10 | 3 |
wall of small intestine | 7.45e-10 | 3 |
digestive system | 2.62e-09 | 116 |
digestive tract | 2.62e-09 | 116 |
primitive gut | 2.62e-09 | 116 |
endoderm-derived structure | 4.46e-09 | 118 |
endoderm | 4.46e-09 | 118 |
presumptive endoderm | 4.46e-09 | 118 |
gut-associated lymphoid tissue | 3.68e-08 | 2 |
mucosa-associated lymphoid tissue | 3.68e-08 | 2 |
lymphoid tissue | 3.68e-08 | 2 |
subdivision of digestive tract | 2.55e-07 | 114 |