FFCP PHASE1:Hg19::chrX:48916506..48916557,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:48916506..48916557,+
|short_description=p1@CCDC120
|description=CAGE_peak_1_at_CCDC120_5end
|association_with_transcript=0bp_to_ENST00000376396,ENST0000042...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=90060 | |EntrezGene=90060 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28910 | |HGNC=28910 | ||
|TSSclassifier=strong | |||
|UniProt=Q96HB5,F5GZU4,B4DTU2,B4DFC1,B4DF24,A8K5Q5 | |UniProt=Q96HB5,F5GZU4,B4DTU2,B4DFC1,B4DF24,A8K5Q5 | ||
|association_with_transcript=0bp_to_ENST00000376396,ENST00000422185,ENST00000536628,NM_001163321,NM_001163322,NM_001163323,NM_033626,uc004dmf.2,uc010nil.2,uc011mmq.1,uc011mmr.1,uc011mms.1_5end | |||
|cluster_id=chrX:48916506..48916557,+ | |||
|coexpression_cluster_id=C543 | |||
|description=CAGE_peak_1_at_CCDC120_5end | |||
|id=chrX:48916506..48916557,+ | |||
|ontology_enrichment_celltype=CL:0000066!9.79e-44!254;CL:0000223!5.36e-18!59;CL:0002076!3.87e-17!43;CL:0002368!5.39e-09!13;CL:0002251!1.30e-08!21;CL:0002159!2.55e-08!13;CL:0000076!5.00e-07!62 | |||
|ontology_enrichment_celltype_v019=CL:0002076;1.66e-16;42!CL:0002368;8.22e-11;13!CL:0002251;2.05e-10;20!CL:0002159;5.86e-08;14!CL:0002202;1.64e-07;9!CL:0002632;1.64e-07;9!CL:1000507;3.35e-07;10!CL:1000494;3.35e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.82e-44,253;CL:0000223,5.26e-22,58;CL:0002076,2.12e-21,42;CL:0002368,8.02e-11,13;CL:0002251,2.13e-10,20;CL:0002159,5.06e-08,14;CL:0002202,1.54e-07,9;CL:0002632,1.54e-07,9;CL:1000507,3.53e-07,10;CL:1000494,3.53e-07,10;CL:0000076,6.51e-07,63 | |||
|ontology_enrichment_development_v019=CL:0000223;5.43e-12;58!UBERON:0008947;3.83e-09;29!UBERON:0006595;8.52e-09;86 | |||
|ontology_enrichment_disease=DOID:305!1.33e-25!106;DOID:0050687!1.22e-16!143;DOID:299!1.01e-08!25;DOID:1749!1.59e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:1749;4.63e-09;14!DOID:299;2.20e-08;25!DOID:305;1.83e-07;106 | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.87e-23,106;DOID:0050687,2.02e-16,143;DOID:1749,5.25e-09,14;DOID:299,1.94e-08,25 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.07e-26!169;UBERON:0000925!2.07e-26!169;UBERON:0006595!2.07e-26!169;UBERON:0001007!4.06e-20!155;UBERON:0001555!4.06e-20!155;UBERON:0007026!4.06e-20!155;UBERON:0004921!3.25e-19!129;UBERON:0004185!3.25e-19!129;UBERON:0000077!3.61e-18!130;UBERON:0001004!3.53e-16!72;UBERON:0001041!7.99e-15!98;UBERON:0000466!9.72e-15!126;UBERON:0000464!1.71e-13!104;UBERON:0000062!1.21e-12!511;UBERON:0000065!1.73e-12!53;UBERON:0005177!3.84e-11!107;UBERON:0005911!8.51e-11!82;UBERON:0008947!2.78e-10!38;UBERON:0003258!2.78e-10!38;UBERON:0000064!7.56e-10!219;UBERON:0001048!1.26e-09!168;UBERON:0000072!2.68e-09!46;UBERON:0000468!3.30e-09!659;UBERON:0001008!1.62e-08!45;UBERON:0006554!2.71e-08!44;UBERON:0000922!3.07e-08!612;UBERON:0007023!4.02e-08!115;UBERON:0002553!4.64e-08!70;UBERON:0000481!5.31e-08!347;UBERON:0009569!7.40e-08!113;UBERON:0000161!1.47e-07!35;UBERON:0005153!1.71e-07!37;UBERON:0002530!1.89e-07!59;UBERON:0000467!2.26e-07!625;UBERON:0000480!2.91e-07!626;UBERON:0005156!3.77e-07!59;UBERON:0000990!3.77e-07!59;UBERON:0003104!4.24e-07!238;UBERON:0009142!4.24e-07!238;UBERON:0005157!4.84e-07!51;UBERON:0005181!7.66e-07!35 | |||
|ontology_enrichment_uberon_v019=UBERON:0000065;4.01e-11;44!UBERON:0001004;3.25e-10;65!UBERON:0004921;1.26e-09;33!UBERON:0000072;2.19e-09;37!UBERON:0006554;3.39e-08;30!UBERON:0001008;3.39e-08;30!UBERON:0005178;6.02e-08;34!UBERON:0002224;6.02e-08;34!UBERON:0002365;7.54e-08;31!UBERON:0002330;7.54e-08;31!UBERON:0005181;1.10e-07;35!UBERON:0005911;1.29e-07;36!UBERON:0004807;1.95e-07;22!UBERON:0004211;3.35e-07;10!UBERON:0009773;3.35e-07;10!UBERON:0001231;3.35e-07;10!UBERON:0004810;3.35e-07;10!UBERON:0000161;6.97e-07;19!UBERON:0000166;6.97e-07;19!UBERON:0001555;8.89e-07;54!UBERON:0002048;9.02e-07;22!UBERON:0000117;9.02e-07;22!UBERON:0000171;9.02e-07;22!UBERON:0000170;9.02e-07;22 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004119,1.83e-31,160;UBERON:0000925,1.83e-31,160;UBERON:0006595,1.83e-31,160;UBERON:0004921,7.79e-25,118;UBERON:0001007,1.70e-24,145;UBERON:0001555,1.70e-24,145;UBERON:0007026,1.70e-24,145;UBERON:0001004,1.11e-19,74;UBERON:0001041,1.54e-18,87;UBERON:0000065,3.91e-15,54;UBERON:0005177,4.47e-14,101;UBERON:0008947,3.06e-13,38;UBERON:0003258,3.06e-13,38;UBERON:0001008,6.89e-13,48;UBERON:0006554,1.32e-12,47;UBERON:0005911,1.96e-12,82;UBERON:0000072,3.11e-11,47;UBERON:0009569,1.62e-10,112;UBERON:0005153,5.65e-10,37;UBERON:0000161,2.11e-09,36;UBERON:0005181,3.76e-09,35;UBERON:0005178,7.52e-09,34;UBERON:0002224,7.52e-09,34;UBERON:0011216,1.22e-08,223;UBERON:0002530,2.61e-08,59;UBERON:0005631,4.04e-08,14;UBERON:0000158,4.04e-08,14;UBERON:0005157,4.36e-08,47;UBERON:0001048,5.39e-08,160;UBERON:0002365,6.62e-08,31;UBERON:0002330,6.62e-08,31;UBERON:0000166,1.60e-07,22;UBERON:0000915,1.66e-07,52;UBERON:0004810,3.53e-07,10;UBERON:0002048,9.56e-07,22;UBERON:0000117,9.56e-07,22;UBERON:0000171,9.56e-07,22;UBERON:0000170,9.56e-07,22;UBERON:0005597,9.56e-07,22;UBERON:0000118,9.56e-07,22 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,14.7440361900905,45.3570759182078,16.3831029097629,18.1999214977633,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.154816123316076,14.7107395916628,16.867531451582,24.7735186811748,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.306083892370903,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0.390178042679635,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.486634870302636,0,0,0,5.17367348215965,26.229260757063,18.5392221392215,0,0,0,0,0,0,0,0,0.347140501607594,0,0,0,0,0.516833518338658,0.71153252537342,0,0.805658634218294,1.52054421143703,0.976248230192678,0,0,0,0,0.112611480483322,0,0,0,0,0,20.0603263985566,0,0,0,0,0.354668382198357,0,0,0,0,0,0.163461903113459,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,14.4945639872473,9.27336810008838,15.4874481510062,8.17223831068289,2.65059536642971,8.59835177234436,9.32949495138334,9.84051318414951,0,0,0,0,0,0,4.02243120135469,5.90046415273356,8.19437501603839,6.61763836394364,7.40790109914181,7.59265981155509,6.87639671616838,7.84885860501384,6.92544882503503,0,0,1.2347220339942,0,6.33775174109154,8.84544495009863,2.95394953340702,0,12.1758554157682,0.343135620597051,32.7055850517704,22.4803506515239,13.5714112755702,15.554858786633,0,0,0,0,0.117408694235822,0,0,0.570762456703795,16.5942923571448,22.3206402144667,0,0,0,7.49870671894216,23.0135515632438,15.5952606966625,6.98556477082217,12.2066254175864,20.7026646749214,0,0,0,0.144119953416961,0.12624243342638,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,0,0,0,0,0,0,0,0,2.71295439353627,0,10.497164074116,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157702415033935,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,5.75942385747893,11.6504807657348,22.9816622930557,0,0,0,0,0,0,0,0,0,0,0,0,8.33930202182193,26.065841139427,13.9963103182562,0,0,0,9.47519187105565,7.39347236202382,11.7652465376528,7.30696123266303,4.74982330017941,0,0,0.863663664408557,0,2.16757150035082,3.51182841698397,10.7048034678916,20.7769002232181,6.49236788694317,0.219259876645935,0.261435451024901,0,1.96808787419823,1.95227036798582,6.4915837338065,0,0,30.4360735137971,29.2527110716435,0,0,0,0,0,0,0,0.0852266274161009,0,11.4046591599075,18.4502464670502,15.4411382118447,14.162089319777,0,0,0,0,0,0,0,0,0,0.316379424718726,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,10.7768766252574,23.4605796437526,30.4894757611703,7.43736026136555,23.6777954969176,28.6401508634963,17.737206141467,11.0267232099341,0,0,0,0,0,0,0,0,1.6023610669121,0,13.2321716629757,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,12.9126972881672,0.879049075631364,0.121360521749513,0,0,10.5047573284584,5.04839957415486,12.5935887860685,0,0.140669416410513,0,0,0,2.59022384726391,1.38141957765574,0.755798243562828,0,0,0,17.4344601225814,3.75944466818779,0,1.67693789582787,0,0,0.969332746095218,0.185536196323703,1.99613798001194,11.9796770099207,24.3138799989424,4.34999745260876,4.09656413827799,14.7467117169804,15.3651993149159,0,0,0,0.885741385813839,0,3.05163472634166,9.50981635408532,7.38869047383869,0,6.75418473817739,31.5097662069643,6.00212016329617,0,23.056390438806,15.1690419052515,14.124158349861,9.57003479195758,5.49585560411174,11.72676507241,0,0,0,0,0,0.167821586975843,0,0,4.64195741961659,2.93819054686466,5.23006364305581,0,2.98578579323551,9.99570478887733,6.11030144933625,0,0,0,0.134802265961354,1.60515529459758,0,0,28.7626989830172,0.971121518136371,13.4158696968793,10.8891644443797,0,1.51647791108371,0,0,0,0,0,0,7.6844577428044,0,24.9926023202589,22.4402590078925,13.3200586068016,12.0561401087001,0,19.1577535952389,18.6377758569773,15.0271286407373,24.732199204547,1.412098027064,2.71176888936639,0,0,0,9.38646637127054,0.801588202515337,3.20179492109029,0.799238438328521,8.78951544640046,0,0,1.58460277786965,0.124252535565433,17.4413585616429,0,0.104602846312333,0,0,0,0.273810757783986,0,0,0,0,0.916641696046735,0.717873024576814,9.98395002494956,0.429226048136571,0,0.134366944973453,0,1.16495949527454,1.49688046383725,1.2362378757175,1.55028150864625,0,0,0,0,2.41129722697529,3.85110422472255,4.15440338029185,1.799791132412,15.476039091159,0,16.436299692364,8.6686278029118,8.02555198465471,0,0,16.8885373641112,1.42939065274673,0,0,0,0,0,0,0,0,0,4.10346254298631,10.6005511129777,0.775697738169303,0,0,11.2770403570668,3.84434685243701,6.4453765090863,4.14239055347196,0.496166021811951,0,0,12.1284838976335,0.544017803369474,0,0,0,5.4968933687582,0,0.122026264901963,0,1.14681839138014,0.776503360757966,0.558867626472451,0,0,0,0,0,1.87333962322753,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0.318593534327405,0,0.155262956876259,0,0,0.521745061811734,0.751288044986092,0.380805212168795,0.406870733204662,0,0.751873899297419,0,0,0,0,0,0,0,12.6520538911206,0,0,4.86197196080051,0,0.71635536432595,18.8368882768193,10.7449184293566,0,15.0472949851314,5.06827321959218,6.14979644611072,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| ||
|short_description=p1@CCDC120 | |||
}} | }} |
Latest revision as of 20:55, 15 September 2015
Short description: | p1@CCDC120 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_CCDC120_5end |
Coexpression cluster: | C543_Alveolar_Corneal_Urothelial_amniotic_Esophageal_Tracheal_esophagus |
Association with transcript: | 0bp_to_ENST00000376396, ENST00000422185, ENST00000536628, NM_001163321, NM_001163322, NM_001163323, NM_033626, uc004dmf.2, uc010nil.2, uc011mmq.1, uc011mmr.1, uc011mms.1_5end |
EntrezGene: | CCDC120 |
HGNC: | 28910 |
UniProt: | Q96HB5F5GZU4B4DTU2B4DFC1B4DF24A8K5Q5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.82e-44 | 253 |
endodermal cell | 5.26e-22 | 58 |
endo-epithelial cell | 2.12e-21 | 42 |
respiratory epithelial cell | 8.02e-11 | 13 |
epithelial cell of alimentary canal | 2.13e-10 | 20 |
general ecto-epithelial cell | 5.06e-08 | 14 |
epithelial cell of tracheobronchial tree | 1.54e-07 | 9 |
epithelial cell of lower respiratory tract | 1.54e-07 | 9 |
kidney tubule cell | 3.53e-07 | 10 |
nephron tubule epithelial cell | 3.53e-07 | 10 |
squamous epithelial cell | 6.51e-07 | 63 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.87e-23 | 106 |
cell type cancer | 2.02e-16 | 143 |
squamous cell carcinoma | 5.25e-09 | 14 |
adenocarcinoma | 1.94e-08 | 25 |