FFCP PHASE1:Hg19::chr3:149530587..149530604,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=11342 | |EntrezGene=11342 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10057 | |HGNC=10057 | ||
|TSSclassifier=strong | |||
|UniProt=C9JYY4 | |UniProt=C9JYY4 | ||
|association_with_transcript=-15bp_to_ENST00000470151_5end | |association_with_transcript=-15bp_to_ENST00000470151_5end | ||
|cluster_id=chr3:149530587..149530604,+ | |||
|coexpression_cluster_id=C0 | |coexpression_cluster_id=C0 | ||
|description=CAGE_peak_5_at_RNF13_5end | |description=CAGE_peak_5_at_RNF13_5end | ||
|id=chr3:149530587..149530604,+ | |id=chr3:149530587..149530604,+ | ||
|ontology_enrichment_celltype=CL:0002009!3.76e-33!65;CL:0002057!1.28e-32!42;CL:0002194!7.66e-32!63;CL:0000576!7.66e-32!63;CL:0000040!7.66e-32!63;CL:0000559!7.66e-32!63;CL:0000766!1.14e-31!76;CL:0000860!4.20e-31!45;CL:0000557!2.27e-28!71;CL:0000839!2.71e-26!70;CL:0000738!2.81e-15!140;CL:0002087!3.40e-15!119;CL:0000763!4.38e-14!112;CL:0000049!4.38e-14!112;CL:0002031!1.53e-13!124;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165;CL:0002393!1.38e-07!9;CL:0002397!1.38e-07!9;CL:0000988!1.81e-07!182;CL:0000037!1.93e-07!172;CL:0000566!1.93e-07!172 | |ontology_enrichment_celltype=CL:0002009!3.76e-33!65;CL:0002057!1.28e-32!42;CL:0002194!7.66e-32!63;CL:0000576!7.66e-32!63;CL:0000040!7.66e-32!63;CL:0000559!7.66e-32!63;CL:0000766!1.14e-31!76;CL:0000860!4.20e-31!45;CL:0000557!2.27e-28!71;CL:0000839!2.71e-26!70;CL:0000738!2.81e-15!140;CL:0002087!3.40e-15!119;CL:0000763!4.38e-14!112;CL:0000049!4.38e-14!112;CL:0002031!1.53e-13!124;CL:0002032!1.05e-07!165;CL:0000837!1.05e-07!165;CL:0002393!1.38e-07!9;CL:0002397!1.38e-07!9;CL:0000988!1.81e-07!182;CL:0000037!1.93e-07!172;CL:0000566!1.93e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.40e-64;33!CL:0002057;4.40e-64;33!CL:0000473;7.77e-63;39!CL:0000234;7.77e-63;39!CL:0000576;1.55e-51;48!CL:0000766;4.75e-42;69!CL:0000763;1.82e-17;100!CL:0000235;1.04e-12;6!CL:0002393;2.11e-12;6!CL:0002397;2.11e-12;6!CL:0000738;1.68e-11;136!CL:0002087;2.55e-11;104!CL:0000094;3.41e-09;8!CL:0000081;1.65e-08;11!CL:0000875;2.23e-07;3!CL:0002396;2.23e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,4.56e-100,48;CL:0000234,4.56e-100,48;CL:0000860,3.70e-88,42;CL:0002057,3.70e-88,42;CL:0002009,1.68e-87,61;CL:0000766,6.54e-85,72;CL:0002194,7.82e-84,59;CL:0000576,7.82e-84,59;CL:0000040,7.82e-84,59;CL:0000559,7.82e-84,59;CL:0000557,2.38e-78,67;CL:0000839,1.98e-73,66;CL:0000763,1.71e-55,108;CL:0000049,1.71e-55,108;CL:0000738,6.63e-44,136;CL:0002087,3.48e-39,115;CL:0002031,1.28e-38,120;CL:0002032,4.86e-33,161;CL:0000837,4.86e-33,161;CL:0000037,2.60e-32,168;CL:0000988,5.24e-31,177;CL:0002393,3.11e-18,9;CL:0002397,3.11e-18,9;CL:0000235,9.94e-13,6;CL:0000134,7.80e-11,354;CL:0002320,2.64e-10,361;CL:0000094,2.47e-09,8;CL:0000081,1.50e-08,11;CL:0000219,1.83e-08,386;CL:0000875,2.31e-07,3;CL:0002396,2.31e-07,3;CL:0000048,3.90e-07,427;CL:0000723,8.09e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;9.34e-63;42!CL:0000049;1.70e-16;108 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!3.73e-24!102;UBERON:0003061!3.73e-24!102;UBERON:0002371!1.95e-23!80;UBERON:0001474!2.92e-22!86;UBERON:0002193!7.02e-20!112;UBERON:0004765!1.28e-19!101;UBERON:0001434!1.28e-19!101;UBERON:0002405!3.01e-14!115;UBERON:0002204!3.12e-11!167;UBERON:0003081!1.73e-08!216;UBERON:0000926!2.50e-08!448;UBERON:0004120!2.50e-08!448;UBERON:0006603!2.50e-08!448 | |ontology_enrichment_uberon=UBERON:0002390!3.73e-24!102;UBERON:0003061!3.73e-24!102;UBERON:0002371!1.95e-23!80;UBERON:0001474!2.92e-22!86;UBERON:0002193!7.02e-20!112;UBERON:0004765!1.28e-19!101;UBERON:0001434!1.28e-19!101;UBERON:0002405!3.01e-14!115;UBERON:0002204!3.12e-11!167;UBERON:0003081!1.73e-08!216;UBERON:0000926!2.50e-08!448;UBERON:0004120!2.50e-08!448;UBERON:0006603!2.50e-08!448 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.63e-67,76;UBERON:0004765,1.45e-61,90;UBERON:0001474,2.80e-61,82;UBERON:0001434,8.01e-54,100;UBERON:0002390,6.58e-53,98;UBERON:0003061,6.58e-53,98;UBERON:0002405,3.07e-52,93;UBERON:0002193,1.47e-46,108;UBERON:0002204,2.81e-28,167;UBERON:0003081,2.17e-23,203;UBERON:0000926,5.68e-12,315;UBERON:0004120,5.68e-12,315;UBERON:0006603,5.68e-12,315;UBERON:0002384,1.38e-09,371 | |||
|phase1_expression=0.363356758541113,0.856402095563933,0.563817616383885,0,0.893922188854576,0,2.53299878168311,0,0.261185628199839,0,0,0,0.263766978228454,0,0,1.34465029290355,0,0,0.487932798790507,0,0,0,0,0.136874425072884,0,0,0,0,3.93364276848904,0.767658796194425,1.39334510984468,1.83884244895785,0.30120591877825,0.739508020333575,0,0,0,2.21598163412751,1.80490002723128,3.90619567288533,3.13481663935894,1.6194683300949,0.257575567634187,7.4153101777578,6.80176698639857,7.27752183563449,12.551167992907,11.5127008646111,10.8397229813286,18.1246207162955,15.6258030982751,17.2632027818667,13.7898272294647,13.5551783552603,12.1883837934908,10.5415710143859,8.18718450173537,7.86532195557796,12.549439587207,13.4790191371959,15.344091019177,7.25672860410775,14.5608470063791,11.5080682643827,14.5104619314292,15.3194010666608,11.8336227309159,16.0799145764316,15.1230046341858,13.2485195270121,16.345786571101,15.0993830754902,14.8737322097216,5.91514801673437,4.46469029926591,3.14487968262564,2.02191536063691,1.80212271409808,1.76798145366788,6.55529310604872,6.96208370196815,3.47061892152804,0,0,0,0.853460445133014,0,0,0,0,0,0.587237189370939,0,0,0.560508562981536,0.526768169550154,0.393419540227666,0.393010762749165,0.616804496998528,0,0,0,0,0.334231370655521,0.589211814949674,0.221533894583621,0,0,0,0,0,0,0,0,0,0.113309342697566,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0.403213486449465,1.06976078313403,0.144824403882799,0,0.670700859703636,0.255725123687061,0.361439152384566,0.50133791063589,0.144846518960824,0.795285947051099,0.486634870302636,0,0,0,0.0654895377488563,0.364295288292542,0,0,0.522389211897802,0.664789802594326,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0.22452937262617,0.112611480483322,0,0,0,3.9534125230819,7.75560528296651,0,0,0,0.264818361626438,0,0,0,0,0,0,0,0,0,0,0,0.312160076830321,0,0.149448680551801,0,0,0,0,0,0.103325781175765,0,0,0,0,0,0.125118519871964,0.277064115484183,0,0,0.150238058906597,0,0.358779271377724,0,0,0,0,0,0,0,0.292311015483596,0.252433774244115,0.0920498986422993,0.161646056818812,0.355009592516614,0,0,0.57978255948989,2.18196896472668,0.286804595389004,0,0,0,0.10366105501537,0,0,0,0,0,0,0,0.473227200159376,0,0.482022059766964,0.220587945464788,0.653638332277218,0,0.539325232640658,0,1.53898862778556,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.245976877086227,0,0.768251997860379,0,0.301586917234893,0.185176890317059,0,0,0,0,0.117408694235822,0,0,0.190254152234598,0,1.71697232418975,3.20082107913617,3.7440682422278,2.52672975890838,3.74935335947108,1.51183915378974,1.27597587518148,1.16426079513703,0.581267877027924,0.383382679165211,0,0,0,0,0.12624243342638,0.444485260045183,0.381988425558278,0,0,0.205654985406647,0,0.285826432630578,0,0.43596006883328,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0.301439377059586,0,0.099972991182057,3.64871341923571,4.52031382288914,4.21667878966063,0.479249710983165,1.14861935834114,0,0.144781306667579,0.410952645100767,0,0,0.197030760201927,0.431255149719035,0.513372145118994,0,0,0,0,0,2.99602809578873,0,7.45947924184864,0,0,0,0,0,0.157702415033935,0.117141414992713,0,0,0,0,0.184369168541703,0.0868836144680828,0,0,0.206768026122887,1.94142780736755,0.320182673410333,0,0,0.604780586659361,0.248107807818777,0.153461973288062,0,0.640695746278505,0.511707249066704,0.482561763430822,0,0,0.177561725313127,0,0,0.232420756919918,0.241718899183244,0.40101294060657,2.11786274552562,0,0,0.131124414959424,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0,0,0,0.256450125116389,0.328014645699706,0.650756789328606,0.309123034943167,0,0.247528499761764,0.574265537996172,0,0,0,0.308097234229289,0.307007349452259,0.137836572484531,0.107420244868274,0,0,0.0890320356467374,1.32227932288782,1.15314040419064,2.16941611240793,1.0115778085555,0.464845549297286,0.31481234683064,0,0.308033580176089,0,0,0.55597265731176,0.572499546967965,0,0,0,0.255897791311334,0.42793898803392,0,0,0,0,0.117812402345686,0.202182481573316,0,0.421258456238981,0,0.243713489631284,0,0,0,0,0,0,1.31535265576129,0,0,0.202910376962704,0.30982349809975,0,0.143411352204052,0,0,0,0.211107635297664,0,0,0,0.384888450902048,0,1.08890984861323,0.659006605437454,0,0,0,0,1.01489521846434,0.764637207142375,0,0.238231775457789,0.411362273086194,0.648473311192717,0,0.79312517629427,0.961416640147258,0,1.22520107990516,0,0,0,0,0,0.191505370132367,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0.111443384277478,0,1.43246690842614,0.593929361665277,1.84296421259539,0,0,0.111308705022906,0.824019371133798,0,0.398495976502139,0,0,0,0.123084805461069,0,0.359473404589307,1.07412704805365,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0.262379999988587,0.724999575434793,0.1137934482855,0.254253650292766,1.18193840883968,0,0,0.173624994933292,0,0,0,0,0,0,0.544692317594951,0.697118721393016,0.0769502585037971,0.341826167541004,0.23056390438806,0.448788222048861,0.54323685961004,0.957003479195758,0.274792780205587,2.13213910407454,0,0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| ||
|short_description=p5@RNF13 | |short_description=p5@RNF13 | ||
}} | }} |
Latest revision as of 22:24, 15 September 2015
Short description: | p5@RNF13 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_RNF13_5end |
Coexpression cluster: | C0_CD14_Eosinophils_Neutrophils_Basophils_CD34_immature_Peripheral |
Association with transcript: | -15bp_to_ENST00000470151_5end |
EntrezGene: | RNF13 |
HGNC: | 10057 |
UniProt: | C9JYY4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.63e-67 | 76 |
skeletal element | 1.45e-61 | 90 |
bone element | 2.80e-61 | 82 |
skeletal system | 8.01e-54 | 100 |
hematopoietic system | 6.58e-53 | 98 |
blood island | 6.58e-53 | 98 |
immune system | 3.07e-52 | 93 |
hemolymphoid system | 1.47e-46 | 108 |
musculoskeletal system | 2.81e-28 | 167 |
lateral plate mesoderm | 2.17e-23 | 203 |
mesoderm | 5.68e-12 | 315 |
mesoderm-derived structure | 5.68e-12 | 315 |
presumptive mesoderm | 5.68e-12 | 315 |
connective tissue | 1.38e-09 | 371 |