FFCP PHASE1:Hg19::chr2:235405679..235405739,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10123 | |EntrezGene=10123 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=698 | |HGNC=698 | ||
|TSSclassifier=strong | |||
|UniProt=P56559 | |UniProt=P56559 | ||
|association_with_transcript=0bp_to_ENST00000390645,NM_005737,uc002vvn.2_5end | |association_with_transcript=0bp_to_ENST00000390645,NM_005737,uc002vvn.2_5end | ||
|cluster_id=chr2:235405679..235405739,- | |||
|coexpression_cluster_id=C4201 | |||
|description=CAGE_peak_1_at_ARL4C_5end | |description=CAGE_peak_1_at_ARL4C_5end | ||
|id=chr2:235405679..235405739,- | |id=chr2:235405679..235405739,- | ||
|ontology_enrichment_celltype=CL:0000738!8.89e-17!140;CL:0002057!4.31e-12!42;CL:0000084!2.92e-11!25;CL:0000827!2.92e-11!25;CL:0000766!2.95e-11!76;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0002031!1.29e-10!124;CL:0002087!1.32e-10!119;CL:0000557!6.84e-10!71;CL:0000860!2.28e-09!45;CL:0002009!1.45e-08!65;CL:0002194!1.03e-07!63;CL:0000576!1.03e-07!63;CL:0000040!1.03e-07!63;CL:0000559!1.03e-07!63;CL:0000839!1.39e-07!70 | |ontology_enrichment_celltype=CL:0000738!8.89e-17!140;CL:0002057!4.31e-12!42;CL:0000084!2.92e-11!25;CL:0000827!2.92e-11!25;CL:0000766!2.95e-11!76;CL:0000791!1.18e-10!18;CL:0000789!1.18e-10!18;CL:0002420!1.18e-10!18;CL:0002419!1.18e-10!18;CL:0000790!1.18e-10!18;CL:0002031!1.29e-10!124;CL:0002087!1.32e-10!119;CL:0000557!6.84e-10!71;CL:0000860!2.28e-09!45;CL:0002009!1.45e-08!65;CL:0002194!1.03e-07!63;CL:0000576!1.03e-07!63;CL:0000040!1.03e-07!63;CL:0000559!1.03e-07!63;CL:0000839!1.39e-07!70 | ||
|ontology_enrichment_celltype_v019=CL:0000084;3.19e-11;25!CL:0000791;1.09e-10;18!CL:0000789;1.09e-10;18!CL:0002419;1.09e-10;18!CL:0000860;1.15e-08;33!CL:0002057;1.15e-08;33!CL:1000507;3.13e-07;10!CL:1000494;3.13e-07;10!CL:0000576;4.20e-07;48!CL:0000473;6.46e-07;39!CL:0000234;6.46e-07;39!CL:0000766;6.75e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,2.92e-19,136;CL:0000766,5.10e-14,72;CL:0002087,1.19e-12,115;CL:0002031,1.26e-12,120;CL:0000557,1.54e-12,67;CL:0000860,4.10e-12,42;CL:0002057,4.10e-12,42;CL:0000473,2.16e-11,48;CL:0000234,2.16e-11,48;CL:0000084,3.33e-11,25;CL:0000827,3.33e-11,25;CL:0002009,4.12e-11,61;CL:0000791,1.13e-10,18;CL:0000789,1.13e-10,18;CL:0002420,1.13e-10,18;CL:0002419,1.13e-10,18;CL:0000790,1.13e-10,18;CL:0002194,3.88e-10,59;CL:0000576,3.88e-10,59;CL:0000040,3.88e-10,59;CL:0000559,3.88e-10,59;CL:0000839,7.70e-10,66;CL:1000507,3.20e-07,10;CL:1000494,3.20e-07,10;CL:0000037,5.24e-07,168;CL:0000988,9.94e-07,177 | |||
|ontology_enrichment_development_v019=CL:0000790;1.09e-10;18!CL:0002057;1.78e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!6.94e-12!102;UBERON:0003061!6.94e-12!102;UBERON:0002193!1.29e-09!112;UBERON:0002371!1.95e-08!80;UBERON:0004765!7.08e-08!101;UBERON:0001434!7.08e-08!101;UBERON:0001474!9.31e-08!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;3.13e-07;10!UBERON:0009773;3.13e-07;10!UBERON:0001231;3.13e-07;10!UBERON:0004810;3.13e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.47e-14,98;UBERON:0003061,3.47e-14,98;UBERON:0002193,1.88e-11,108;UBERON:0002371,1.18e-10,76;UBERON:0001474,8.33e-10,82;UBERON:0002405,9.29e-10,93;UBERON:0004765,5.98e-09,90;UBERON:0001434,6.98e-09,100;UBERON:0004810,3.20e-07,10 | |||
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| ||
|short_description=p1@ARL4C | |short_description=p1@ARL4C | ||
}} | }} |
Latest revision as of 01:24, 16 September 2015
Short description: | p1@ARL4C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_ARL4C_5end |
Coexpression cluster: | C4201_immature_CD4_CD8_Natural_Mast_Basophils_Dendritic |
Association with transcript: | 0bp_to_ENST00000390645, NM_005737, uc002vvn.2_5end |
EntrezGene: | ARL4C |
HGNC: | 698 |
UniProt: | P56559 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 2.92e-19 | 136 |
myeloid leukocyte | 5.10e-14 | 72 |
nongranular leukocyte | 1.19e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.26e-12 | 120 |
granulocyte monocyte progenitor cell | 1.54e-12 | 67 |
classical monocyte | 4.10e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.10e-12 | 42 |
defensive cell | 2.16e-11 | 48 |
phagocyte | 2.16e-11 | 48 |
T cell | 3.33e-11 | 25 |
pro-T cell | 3.33e-11 | 25 |
macrophage dendritic cell progenitor | 4.12e-11 | 61 |
mature alpha-beta T cell | 1.13e-10 | 18 |
alpha-beta T cell | 1.13e-10 | 18 |
immature T cell | 1.13e-10 | 18 |
mature T cell | 1.13e-10 | 18 |
immature alpha-beta T cell | 1.13e-10 | 18 |
monopoietic cell | 3.88e-10 | 59 |
monocyte | 3.88e-10 | 59 |
monoblast | 3.88e-10 | 59 |
promonocyte | 3.88e-10 | 59 |
myeloid lineage restricted progenitor cell | 7.70e-10 | 66 |
kidney tubule cell | 3.20e-07 | 10 |
nephron tubule epithelial cell | 3.20e-07 | 10 |
hematopoietic stem cell | 5.24e-07 | 168 |
hematopoietic cell | 9.94e-07 | 177 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.47e-14 | 98 |
blood island | 3.47e-14 | 98 |
hemolymphoid system | 1.88e-11 | 108 |
bone marrow | 1.18e-10 | 76 |
bone element | 8.33e-10 | 82 |
immune system | 9.29e-10 | 93 |
skeletal element | 5.98e-09 | 90 |
skeletal system | 6.98e-09 | 100 |
nephron tubule epithelium | 3.20e-07 | 10 |