FFCP PHASE1:Hg19::chr9:134615326..134615438,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2889 | |EntrezGene=2889 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4568 | |HGNC=4568 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JUE9 | |UniProt=Q5JUE9 | ||
|association_with_transcript=0bp_to_ENST00000438647_5end | |association_with_transcript=0bp_to_ENST00000438647_5end | ||
|cluster_id=chr9:134615326..134615438,- | |||
|description=CAGE_peak_2_at_RAPGEF1_5end | |description=CAGE_peak_2_at_RAPGEF1_5end | ||
|id=chr9:134615326..134615438,- | |id=chr9:134615326..134615438,- | ||
|ontology_enrichment_celltype=CL:0000738!2.05e-42!140;CL:0002087!7.16e-35!119;CL:0002031!2.82e-30!124;CL:0000037!6.82e-26!172;CL:0000566!6.82e-26!172;CL:0000988!1.74e-25!182;CL:0000766!2.58e-25!76;CL:0002032!2.99e-24!165;CL:0000837!2.99e-24!165;CL:0002009!3.49e-23!65;CL:0002194!1.97e-22!63;CL:0000576!1.97e-22!63;CL:0000040!1.97e-22!63;CL:0000559!1.97e-22!63;CL:0000557!1.52e-21!71;CL:0002057!1.78e-21!42;CL:0000860!3.57e-19!45;CL:0000839!2.41e-18!70;CL:0000763!4.44e-13!112;CL:0000049!4.44e-13!112;CL:0000542!2.76e-11!53;CL:0000051!2.76e-11!53;CL:0000838!4.04e-11!52;CL:0000451!1.95e-07!10;CL:0000115!4.28e-07!35 | |ontology_enrichment_celltype=CL:0000738!2.05e-42!140;CL:0002087!7.16e-35!119;CL:0002031!2.82e-30!124;CL:0000037!6.82e-26!172;CL:0000566!6.82e-26!172;CL:0000988!1.74e-25!182;CL:0000766!2.58e-25!76;CL:0002032!2.99e-24!165;CL:0000837!2.99e-24!165;CL:0002009!3.49e-23!65;CL:0002194!1.97e-22!63;CL:0000576!1.97e-22!63;CL:0000040!1.97e-22!63;CL:0000559!1.97e-22!63;CL:0000557!1.52e-21!71;CL:0002057!1.78e-21!42;CL:0000860!3.57e-19!45;CL:0000839!2.41e-18!70;CL:0000763!4.44e-13!112;CL:0000049!4.44e-13!112;CL:0000542!2.76e-11!53;CL:0000051!2.76e-11!53;CL:0000838!4.04e-11!52;CL:0000451!1.95e-07!10;CL:0000115!4.28e-07!35 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.54e-16;33!CL:0002057;1.54e-16;33!CL:0000473;1.93e-16;39!CL:0000234;1.93e-16;39!CL:0000576;4.58e-14;48!CL:0000766;1.03e-11;69!CL:0002087;5.10e-11;104!CL:0000738;1.27e-09;136!CL:0000451;1.65e-07;10!CL:0000542;9.66e-07;53 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,9.62e-45,136;CL:0002087,3.67e-37,115;CL:0002031,2.71e-32,120;CL:0000766,7.10e-28,72;CL:0000037,2.54e-27,168;CL:0000988,9.14e-27,177;CL:0002009,6.78e-26,61;CL:0002032,1.17e-25,161;CL:0000837,1.17e-25,161;CL:0002194,3.83e-25,59;CL:0000576,3.83e-25,59;CL:0000040,3.83e-25,59;CL:0000559,3.83e-25,59;CL:0000473,1.31e-24,48;CL:0000234,1.31e-24,48;CL:0000557,6.24e-24,67;CL:0000860,1.78e-21,42;CL:0002057,1.78e-21,42;CL:0000839,1.71e-20,66;CL:0000763,2.88e-14,108;CL:0000049,2.88e-14,108;CL:0000542,2.76e-11,53;CL:0000051,2.76e-11,53;CL:0000838,4.04e-11,52;CL:0000451,1.95e-07,10;CL:0000115,3.99e-07,36 | |||
|ontology_enrichment_development_v019=CL:0002057;5.92e-16;42!CL:0000051;9.66e-07;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!7.25e-24!112;UBERON:0002390!5.05e-23!102;UBERON:0003061!5.05e-23!102;UBERON:0002405!5.90e-20!115;UBERON:0002371!3.64e-19!80;UBERON:0001474!4.90e-17!86;UBERON:0004765!7.28e-14!101;UBERON:0001434!7.28e-14!101;UBERON:0007023!9.71e-13!115;UBERON:0003081!2.53e-08!216 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.12e-25,108;UBERON:0002390,6.44e-25,98;UBERON:0003061,6.44e-25,98;UBERON:0002405,7.24e-23,93;UBERON:0002371,3.75e-21,76;UBERON:0001474,9.34e-19,82;UBERON:0004765,3.18e-18,90;UBERON:0001434,7.86e-16,100;UBERON:0007023,1.66e-12,114;UBERON:0003081,2.32e-09,203 | |||
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| ||
|short_description=p2@RAPGEF1 | |short_description=p2@RAPGEF1 | ||
}} | }} |
Latest revision as of 03:45, 16 September 2015
Short description: | p2@RAPGEF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_RAPGEF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000438647_5end |
EntrezGene: | RAPGEF1 |
HGNC: | 4568 |
UniProt: | Q5JUE9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 9.62e-45 | 136 |
nongranular leukocyte | 3.67e-37 | 115 |
hematopoietic lineage restricted progenitor cell | 2.71e-32 | 120 |
myeloid leukocyte | 7.10e-28 | 72 |
hematopoietic stem cell | 2.54e-27 | 168 |
hematopoietic cell | 9.14e-27 | 177 |
macrophage dendritic cell progenitor | 6.78e-26 | 61 |
hematopoietic oligopotent progenitor cell | 1.17e-25 | 161 |
hematopoietic multipotent progenitor cell | 1.17e-25 | 161 |
monopoietic cell | 3.83e-25 | 59 |
monocyte | 3.83e-25 | 59 |
monoblast | 3.83e-25 | 59 |
promonocyte | 3.83e-25 | 59 |
defensive cell | 1.31e-24 | 48 |
phagocyte | 1.31e-24 | 48 |
granulocyte monocyte progenitor cell | 6.24e-24 | 67 |
classical monocyte | 1.78e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.78e-21 | 42 |
myeloid lineage restricted progenitor cell | 1.71e-20 | 66 |
myeloid cell | 2.88e-14 | 108 |
common myeloid progenitor | 2.88e-14 | 108 |
lymphocyte | 2.76e-11 | 53 |
common lymphoid progenitor | 2.76e-11 | 53 |
lymphoid lineage restricted progenitor cell | 4.04e-11 | 52 |
dendritic cell | 1.95e-07 | 10 |
endothelial cell | 3.99e-07 | 36 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.12e-25 | 108 |
hematopoietic system | 6.44e-25 | 98 |
blood island | 6.44e-25 | 98 |
immune system | 7.24e-23 | 93 |
bone marrow | 3.75e-21 | 76 |
bone element | 9.34e-19 | 82 |
skeletal element | 3.18e-18 | 90 |
skeletal system | 7.86e-16 | 100 |
adult organism | 1.66e-12 | 114 |
lateral plate mesoderm | 2.32e-09 | 203 |