FFCP PHASE1:Hg19::chr1:230883185..230883196,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10753 | |EntrezGene=10753 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1486 | |HGNC=1486 | ||
|TSSclassifier=strong | |||
|UniProt=E7ESS6 | |UniProt=E7ESS6 | ||
|association_with_transcript=6bp_to_ENST00000366666_5end | |association_with_transcript=6bp_to_ENST00000366666_5end | ||
|cluster_id=chr1:230883185..230883196,+ | |||
|coexpression_cluster_id=C238 | |||
|description=CAGE_peak_2_at_CAPN9_5end | |description=CAGE_peak_2_at_CAPN9_5end | ||
|id=chr1:230883185..230883196,+ | |id=chr1:230883185..230883196,+ | ||
|ontology_enrichment_celltype=CL:0002553!9.25e-07!1 | |ontology_enrichment_celltype=CL:0002553!9.25e-07!1 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0000358;2.07e-11;1!UBERON:0001045;4.22e-11;1!UBERON:0006242;4.22e-11;1 | |||
|ontology_enrichment_disease=DOID:5093!3.49e-13!4;DOID:1612!3.49e-13!4 | |||
|ontology_enrichment_disease_v019=DOID:5093;3.64e-11;4!DOID:1612;3.64e-11;4 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,3.46e-11,4;DOID:1612,3.46e-11,4 | |||
|ontology_enrichment_uberon=UBERON:0000059!1.02e-12!11;UBERON:0003127!6.52e-12!2;UBERON:0000160!1.13e-11!27;UBERON:0005409!3.33e-11!35;UBERON:0001155!3.13e-10!9;UBERON:0004921!6.90e-10!129;UBERON:0004185!6.90e-10!129;UBERON:0001007!1.12e-08!155;UBERON:0001555!1.12e-08!155;UBERON:0007026!1.12e-08!155;UBERON:0004119!1.25e-08!169;UBERON:0000925!1.25e-08!169;UBERON:0006595!1.25e-08!169;UBERON:0002171!3.73e-07!1;UBERON:0006518!3.73e-07!1;UBERON:0008949!3.73e-07!1;UBERON:0000101!3.73e-07!1;UBERON:0002167!3.73e-07!1;UBERON:0000915!3.79e-07!52;UBERON:0001154!8.27e-07!1;UBERON:0001153!8.27e-07!1;UBERON:0000065!8.41e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;6.74e-27;22!UBERON:0000160;2.00e-26;17!UBERON:0002108;2.60e-18;4!UBERON:0004921;8.80e-17;33!UBERON:0000059;6.33e-15;11!UBERON:0002171;1.31e-11;1!UBERON:0006518;1.31e-11;1!UBERON:0008949;1.31e-11;1!UBERON:0000101;1.31e-11;1!UBERON:0002167;1.31e-11;1!UBERON:0001154;4.22e-11;1!UBERON:0001153;4.22e-11;1!UBERON:0009854;4.22e-11;1!UBERON:0001155;1.06e-10;9!UBERON:0000922;1.87e-09;49!UBERON:0004907;7.26e-09;5!UBERON:0001555;4.45e-07;54 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,1.78e-26,17;UBERON:0005409,9.79e-24,25;UBERON:0002108,2.38e-18,4;UBERON:0000059,6.00e-15,11;UBERON:0004921,3.68e-12,118;UBERON:0002171,1.31e-11,1;UBERON:0006518,1.31e-11,1;UBERON:0008949,1.31e-11,1;UBERON:0000101,1.31e-11,1;UBERON:0002167,1.31e-11,1;UBERON:0001007,3.36e-11,145;UBERON:0001555,3.36e-11,145;UBERON:0007026,3.36e-11,145;UBERON:0001154,5.43e-11,1;UBERON:0001153,5.43e-11,1;UBERON:0001045,5.43e-11,1;UBERON:0001155,1.10e-10,9;UBERON:0004119,5.97e-10,160;UBERON:0000925,5.97e-10,160;UBERON:0006595,5.97e-10,160;UBERON:0004907,7.26e-09,5 | |||
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|short_description=p2@CAPN9 | |short_description=p2@CAPN9 | ||
}} | }} |
Latest revision as of 07:26, 16 September 2015
Short description: | p2@CAPN9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_CAPN9_5end |
Coexpression cluster: | C238_stomach_gall_breast_duodenum_temporal_MCF7_smallcell |
Association with transcript: | 6bp_to_ENST00000366666_5end |
EntrezGene: | CAPN9 |
HGNC: | 1486 |
UniProt: | E7ESS6 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestine | 1.78e-26 | 17 |
gastrointestinal system | 9.79e-24 | 25 |
small intestine | 2.38e-18 | 4 |
large intestine | 6.00e-15 | 11 |
subdivision of digestive tract | 3.68e-12 | 118 |
lower lobe of right lung | 1.31e-11 | 1 |
right lung lobe | 1.31e-11 | 1 |
lower lobe of lung | 1.31e-11 | 1 |
lobe of lung | 1.31e-11 | 1 |
right lung | 1.31e-11 | 1 |
digestive system | 3.36e-11 | 145 |
digestive tract | 3.36e-11 | 145 |
primitive gut | 3.36e-11 | 145 |
vermiform appendix | 5.43e-11 | 1 |
caecum | 5.43e-11 | 1 |
midgut | 5.43e-11 | 1 |
colon | 1.10e-10 | 9 |
endoderm-derived structure | 5.97e-10 | 160 |
endoderm | 5.97e-10 | 160 |
presumptive endoderm | 5.97e-10 | 160 |
lower digestive tract | 7.26e-09 | 5 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 3.46e-11 | 4 |
breast cancer | 3.46e-11 | 4 |