FFCP PHASE1:Hg19::chr5:150632712..150632725,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr5:150632712..150632725,+ to FFCP PHASE1:Hg19::chr5:150632712..150632725,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2760 | |EntrezGene=2760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4367 | |HGNC=4367 | ||
|TSSclassifier=strong | |||
|UniProt=P17900 | |UniProt=P17900 | ||
|association_with_transcript=99bp_to_NM_000405,NM_001167607,uc003ltr.3,uc011dcr.1,uc011dcs.1_5end | |||
|cluster_id=chr5:150632712..150632725,+ | |||
|coexpression_cluster_id=C2815 | |||
|description=CAGE_peak_4_at_GM2A_5end | |||
|id=chr5:150632712..150632725,+ | |||
|ontology_enrichment_celltype=CL:0000766!3.64e-17!76;CL:0000557!6.42e-16!71;CL:0000839!7.21e-16!70;CL:0002194!3.85e-15!63;CL:0000576!3.85e-15!63;CL:0000040!3.85e-15!63;CL:0000559!3.85e-15!63;CL:0002009!3.31e-14!65;CL:0002057!2.81e-13!42;CL:0000860!7.21e-11!45;CL:0000763!3.38e-08!112;CL:0000049!3.38e-08!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.44e-14;39!CL:0000234;1.44e-14;39!CL:0000860;2.59e-13;33!CL:0002057;2.59e-13;33!CL:0000576;1.61e-09;48!CL:0000766;6.63e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.27e-19,72;CL:0000839,2.41e-18,66;CL:0000557,2.57e-18,67;CL:0002194,1.04e-17,59;CL:0000576,1.04e-17,59;CL:0000040,1.04e-17,59;CL:0000559,1.04e-17,59;CL:0000473,5.49e-17,48;CL:0000234,5.49e-17,48;CL:0002009,1.47e-16,61;CL:0000860,2.74e-13,42;CL:0002057,2.74e-13,42;CL:0000763,3.24e-09,108;CL:0000049,3.24e-09,108 | |||
|ontology_enrichment_development_v019=CL:0002057;5.51e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!4.63e-15!511;UBERON:0002371!1.00e-14!80;UBERON:0001474!9.17e-13!86;UBERON:0000480!2.83e-12!626;UBERON:0004765!3.80e-12!101;UBERON:0001434!3.80e-12!101;UBERON:0002405!3.89e-12!115;UBERON:0000467!4.70e-12!625;UBERON:0000468!1.82e-11!659;UBERON:0002050!3.06e-09!605;UBERON:0005423!3.06e-09!605;UBERON:0000923!4.06e-09!604;UBERON:0005291!4.06e-09!604;UBERON:0006598!4.06e-09!604;UBERON:0002532!4.06e-09!604;UBERON:0000922!4.63e-09!612;UBERON:0002193!6.47e-09!112;UBERON:0007023!8.15e-09!115;UBERON:0002204!1.49e-08!167;UBERON:0001049!3.57e-08!57;UBERON:0005068!3.57e-08!57;UBERON:0006241!3.57e-08!57;UBERON:0007135!3.57e-08!57;UBERON:0002390!4.68e-08!102;UBERON:0003061!4.68e-08!102;UBERON:0003081!6.58e-07!216;UBERON:0002616!9.10e-07!59 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,8.24e-17,76;UBERON:0002405,1.64e-15,93;UBERON:0004765,7.13e-15,90;UBERON:0001474,1.48e-14,82;UBERON:0001434,1.78e-13,100;UBERON:0002050,4.94e-12,564;UBERON:0000923,4.95e-11,560;UBERON:0010316,4.95e-11,560;UBERON:0005291,4.95e-11,560;UBERON:0006598,4.95e-11,560;UBERON:0010317,4.95e-11,560;UBERON:0002532,4.95e-11,560;UBERON:0005423,1.16e-10,581;UBERON:0002193,4.10e-10,108;UBERON:0002204,1.07e-09,167;UBERON:0000922,1.17e-09,592;UBERON:0002390,3.08e-09,98;UBERON:0003061,3.08e-09,98;UBERON:0007023,1.19e-08,114;UBERON:0001049,3.74e-08,56;UBERON:0005068,3.74e-08,56;UBERON:0006241,3.74e-08,56;UBERON:0007135,3.74e-08,56;UBERON:0003081,4.62e-08,203;UBERON:0000073,4.34e-07,53;UBERON:0002616,4.34e-07,53;UBERON:0010371,9.44e-07,104 | |||
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| ||
|short_description=p4@GM2A | |||
}} | }} |
Latest revision as of 08:36, 16 September 2015
Short description: | p4@GM2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_GM2A_5end |
Coexpression cluster: | C2815_Monocytederived_CD14_Mast_corpus_Macrophage_Dendritic_optic |
Association with transcript: | 99bp_to_NM_000405, NM_001167607, uc003ltr.3, uc011dcr.1, uc011dcs.1_5end |
EntrezGene: | GM2A |
HGNC: | 4367 |
UniProt: | P17900 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.27e-19 | 72 |
myeloid lineage restricted progenitor cell | 2.41e-18 | 66 |
granulocyte monocyte progenitor cell | 2.57e-18 | 67 |
monopoietic cell | 1.04e-17 | 59 |
monocyte | 1.04e-17 | 59 |
monoblast | 1.04e-17 | 59 |
promonocyte | 1.04e-17 | 59 |
defensive cell | 5.49e-17 | 48 |
phagocyte | 5.49e-17 | 48 |
macrophage dendritic cell progenitor | 1.47e-16 | 61 |
classical monocyte | 2.74e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.74e-13 | 42 |
myeloid cell | 3.24e-09 | 108 |
common myeloid progenitor | 3.24e-09 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 8.24e-17 | 76 |
immune system | 1.64e-15 | 93 |
skeletal element | 7.13e-15 | 90 |
bone element | 1.48e-14 | 82 |
skeletal system | 1.78e-13 | 100 |
embryonic structure | 4.94e-12 | 564 |
germ layer | 4.95e-11 | 560 |
germ layer / neural crest | 4.95e-11 | 560 |
embryonic tissue | 4.95e-11 | 560 |
presumptive structure | 4.95e-11 | 560 |
germ layer / neural crest derived structure | 4.95e-11 | 560 |
epiblast (generic) | 4.95e-11 | 560 |
developing anatomical structure | 1.16e-10 | 581 |
hemolymphoid system | 4.10e-10 | 108 |
musculoskeletal system | 1.07e-09 | 167 |
embryo | 1.17e-09 | 592 |
hematopoietic system | 3.08e-09 | 98 |
blood island | 3.08e-09 | 98 |
adult organism | 1.19e-08 | 114 |
neural tube | 3.74e-08 | 56 |
neural rod | 3.74e-08 | 56 |
future spinal cord | 3.74e-08 | 56 |
neural keel | 3.74e-08 | 56 |
lateral plate mesoderm | 4.62e-08 | 203 |
regional part of nervous system | 4.34e-07 | 53 |
regional part of brain | 4.34e-07 | 53 |
ecto-epithelium | 9.44e-07 | 104 |