FFCP PHASE1:Hg19::chr5:150632732..150632758,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr5:150632732..150632758,+
|short_description=p1@GM2A
|description=CAGE_peak_1_at_GM2A_5end
|association_with_transcript=119bp_to_NM_000405,NM_001167607,uc003l...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2760 | |EntrezGene=2760 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4367 | |HGNC=4367 | ||
|TSSclassifier=strong | |||
|UniProt=P17900 | |UniProt=P17900 | ||
|association_with_transcript=119bp_to_NM_000405,NM_001167607,uc003ltr.3,uc011dcr.1,uc011dcs.1_5end | |||
|cluster_id=chr5:150632732..150632758,+ | |||
|coexpression_cluster_id=C314 | |||
|description=CAGE_peak_1_at_GM2A_5end | |||
|id=chr5:150632732..150632758,+ | |||
|ontology_enrichment_celltype=CL:0000766!5.29e-21!76;CL:0000557!1.26e-20!71;CL:0000839!1.35e-19!70;CL:0002194!9.36e-19!63;CL:0000576!9.36e-19!63;CL:0000040!9.36e-19!63;CL:0000559!9.36e-19!63;CL:0002009!2.08e-18!65;CL:0002057!4.82e-16!42;CL:0000763!1.85e-13!112;CL:0000049!1.85e-13!112;CL:0000860!4.54e-13!45;CL:0000738!6.90e-13!140;CL:0002371!5.14e-12!591;CL:0002031!2.49e-10!124;CL:0002087!4.19e-10!119;CL:0000144!4.31e-10!625;CL:0000988!3.35e-09!182;CL:0000063!3.90e-09!578;CL:0000037!4.91e-09!172;CL:0000566!4.91e-09!172;CL:0002032!1.02e-08!165;CL:0000837!1.02e-08!165;CL:0000012!1.28e-07!682;CL:0000548!1.29e-07!679;CL:0000004!1.29e-07!679;CL:0000255!1.29e-07!679;CL:0000945!3.83e-07!24;CL:0000826!3.83e-07!24 | |||
|ontology_enrichment_celltype_v019=CL:0000473;3.82e-17;39!CL:0000234;3.82e-17;39!CL:0000860;2.53e-16;33!CL:0002057;2.53e-16;33!CL:0000576;1.76e-12;48!CL:0000766;1.05e-10;69!CL:0000945;3.80e-07;24 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,8.06e-25,72;CL:0000557,1.42e-24,67;CL:0000839,1.88e-23,66;CL:0002194,8.86e-23,59;CL:0000576,8.86e-23,59;CL:0000040,8.86e-23,59;CL:0000559,8.86e-23,59;CL:0002009,2.69e-22,61;CL:0000473,6.39e-20,48;CL:0000234,6.39e-20,48;CL:0000860,4.82e-16,42;CL:0002057,4.82e-16,42;CL:0000763,1.07e-15,108;CL:0000049,1.07e-15,108;CL:0000738,8.43e-15,136;CL:0002031,4.12e-12,120;CL:0002087,6.65e-12,115;CL:0000988,1.98e-10,177;CL:0000037,2.08e-10,168;CL:0002032,4.35e-10,161;CL:0000837,4.35e-10,161;CL:0000945,3.83e-07,24;CL:0000826,3.83e-07,24 | |||
|ontology_enrichment_development_v019=CL:0002057;4.49e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.26e-20!112;UBERON:0002371!3.55e-20!80;UBERON:0002405!1.93e-19!115;UBERON:0002390!2.32e-18!102;UBERON:0003061!2.32e-18!102;UBERON:0001474!3.28e-17!86;UBERON:0004765!6.35e-14!101;UBERON:0001434!6.35e-14!101;UBERON:0003081!2.02e-11!216;UBERON:0002204!1.30e-08!167;UBERON:0000926!3.62e-07!448;UBERON:0004120!3.62e-07!448;UBERON:0006603!3.62e-07!448 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002405,4.97e-25,93;UBERON:0002371,9.09e-24,76;UBERON:0002193,2.78e-23,108;UBERON:0002390,3.00e-21,98;UBERON:0003061,3.00e-21,98;UBERON:0004765,1.93e-20,90;UBERON:0001474,2.68e-20,82;UBERON:0001434,8.71e-16,100;UBERON:0003081,7.46e-13,203;UBERON:0000926,2.79e-10,315;UBERON:0004120,2.79e-10,315;UBERON:0006603,2.79e-10,315;UBERON:0002204,9.89e-10,167 | |||
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| ||
|short_description=p1@GM2A | |||
}} | }} |
Latest revision as of 08:36, 16 September 2015
Short description: | p1@GM2A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GM2A_5end |
Coexpression cluster: | C314_Macrophage_Dendritic_Monocytederived_CD14_Esophageal_Mast_Keratinocyte |
Association with transcript: | 119bp_to_NM_000405, NM_001167607, uc003ltr.3, uc011dcr.1, uc011dcs.1_5end |
EntrezGene: | GM2A |
HGNC: | 4367 |
UniProt: | P17900 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 8.06e-25 | 72 |
granulocyte monocyte progenitor cell | 1.42e-24 | 67 |
myeloid lineage restricted progenitor cell | 1.88e-23 | 66 |
monopoietic cell | 8.86e-23 | 59 |
monocyte | 8.86e-23 | 59 |
monoblast | 8.86e-23 | 59 |
promonocyte | 8.86e-23 | 59 |
macrophage dendritic cell progenitor | 2.69e-22 | 61 |
defensive cell | 6.39e-20 | 48 |
phagocyte | 6.39e-20 | 48 |
classical monocyte | 4.82e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.82e-16 | 42 |
myeloid cell | 1.07e-15 | 108 |
common myeloid progenitor | 1.07e-15 | 108 |
leukocyte | 8.43e-15 | 136 |
hematopoietic lineage restricted progenitor cell | 4.12e-12 | 120 |
nongranular leukocyte | 6.65e-12 | 115 |
hematopoietic cell | 1.98e-10 | 177 |
hematopoietic stem cell | 2.08e-10 | 168 |
hematopoietic oligopotent progenitor cell | 4.35e-10 | 161 |
hematopoietic multipotent progenitor cell | 4.35e-10 | 161 |
lymphocyte of B lineage | 3.83e-07 | 24 |
pro-B cell | 3.83e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
immune system | 4.97e-25 | 93 |
bone marrow | 9.09e-24 | 76 |
hemolymphoid system | 2.78e-23 | 108 |
hematopoietic system | 3.00e-21 | 98 |
blood island | 3.00e-21 | 98 |
skeletal element | 1.93e-20 | 90 |
bone element | 2.68e-20 | 82 |
skeletal system | 8.71e-16 | 100 |
lateral plate mesoderm | 7.46e-13 | 203 |
mesoderm | 2.79e-10 | 315 |
mesoderm-derived structure | 2.79e-10 | 315 |
presumptive mesoderm | 2.79e-10 | 315 |
musculoskeletal system | 9.89e-10 | 167 |