FFCP PHASE1:Hg19::chr13:108867846..108867920,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3981 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6601 | |||
|TSSclassifier=strong | |||
|UniProt=P49917,A8K8Q4 | |||
|association_with_transcript=0bp_to_ENST00000442234,NM_206937,uc001vqo.2,uc010agf.2,uc010agg.1_5end | |||
|cluster_id=chr13:108867846..108867920,- | |||
|description=CAGE_peak_1_at_LIG4_5end | |||
|id=chr13:108867846..108867920,- | |||
|ontology_enrichment_celltype=CL:0002009!2.18e-13!65;CL:0002194!5.07e-13!63;CL:0000576!5.07e-13!63;CL:0000040!5.07e-13!63;CL:0000559!5.07e-13!63;CL:0000766!6.50e-13!76;CL:0000839!5.92e-12!70;CL:0002057!1.47e-11!42;CL:0000557!1.96e-11!71;CL:0000860!8.30e-11!45;CL:0000763!1.65e-07!112;CL:0000049!1.65e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.88e-12;39!CL:0000234;1.88e-12;39!CL:0000860;1.36e-11;33!CL:0002057;1.36e-11;33!CL:0000576;1.85e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,1.86e-14,48;CL:0000234,1.86e-14,48;CL:0002009,6.14e-14,61;CL:0002194,1.42e-13,59;CL:0000576,1.42e-13,59;CL:0000040,1.42e-13,59;CL:0000559,1.42e-13,59;CL:0000766,2.51e-13,72;CL:0000839,2.29e-12,66;CL:0000557,7.05e-12,67;CL:0000860,1.36e-11,42;CL:0002057,1.36e-11,42;CL:0000763,1.36e-07,108;CL:0000049,1.36e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.64e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!1.32e-10!101;UBERON:0001434!1.32e-10!101;UBERON:0002371!2.37e-10!80;UBERON:0001474!2.51e-10!86;UBERON:0002390!1.14e-09!102;UBERON:0003061!1.14e-09!102;UBERON:0002193!1.15e-08!112;UBERON:0001017!6.81e-08!82;UBERON:0005743!1.25e-07!86;UBERON:0001049!1.87e-07!57;UBERON:0005068!1.87e-07!57;UBERON:0006241!1.87e-07!57;UBERON:0007135!1.87e-07!57;UBERON:0003080!4.32e-07!42;UBERON:0002616!5.13e-07!59;UBERON:0000062!5.43e-07!511;UBERON:0002780!5.58e-07!41;UBERON:0001890!5.58e-07!41;UBERON:0006240!5.58e-07!41 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004765,7.86e-11,90;UBERON:0002371,1.06e-10,76;UBERON:0001474,1.20e-10,82;UBERON:0001434,2.51e-10,100;UBERON:0002390,6.56e-10,98;UBERON:0003061,6.56e-10,98;UBERON:0002193,8.43e-09,108;UBERON:0002405,1.30e-08,93;UBERON:0001017,6.59e-08,81;UBERON:0001049,2.01e-07,56;UBERON:0005068,2.01e-07,56;UBERON:0006241,2.01e-07,56;UBERON:0007135,2.01e-07,56;UBERON:0002780,4.69e-07,41;UBERON:0001890,4.69e-07,41;UBERON:0003080,4.69e-07,41;UBERON:0006240,4.69e-07,41 | |||
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| |||
|short_description=p1@LIG4 | |||
}} |
Latest revision as of 10:56, 16 September 2015
Short description: | p1@LIG4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_LIG4_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000442234, NM_206937, uc001vqo.2, uc010agf.2, uc010agg.1_5end |
EntrezGene: | LIG4 |
HGNC: | 6601 |
UniProt: | P49917A8K8Q4 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 1.86e-14 | 48 |
phagocyte | 1.86e-14 | 48 |
macrophage dendritic cell progenitor | 6.14e-14 | 61 |
monopoietic cell | 1.42e-13 | 59 |
monocyte | 1.42e-13 | 59 |
monoblast | 1.42e-13 | 59 |
promonocyte | 1.42e-13 | 59 |
myeloid leukocyte | 2.51e-13 | 72 |
myeloid lineage restricted progenitor cell | 2.29e-12 | 66 |
granulocyte monocyte progenitor cell | 7.05e-12 | 67 |
classical monocyte | 1.36e-11 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.36e-11 | 42 |
myeloid cell | 1.36e-07 | 108 |
common myeloid progenitor | 1.36e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
skeletal element | 7.86e-11 | 90 |
bone marrow | 1.06e-10 | 76 |
bone element | 1.20e-10 | 82 |
skeletal system | 2.51e-10 | 100 |
hematopoietic system | 6.56e-10 | 98 |
blood island | 6.56e-10 | 98 |
hemolymphoid system | 8.43e-09 | 108 |
immune system | 1.30e-08 | 93 |
central nervous system | 6.59e-08 | 81 |
neural tube | 2.01e-07 | 56 |
neural rod | 2.01e-07 | 56 |
future spinal cord | 2.01e-07 | 56 |
neural keel | 2.01e-07 | 56 |
regional part of forebrain | 4.69e-07 | 41 |
forebrain | 4.69e-07 | 41 |
anterior neural tube | 4.69e-07 | 41 |
future forebrain | 4.69e-07 | 41 |