FFCP PHASE1:Hg19::chrX:80065319..80065351,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=254065 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17342 | |||
|TSSclassifier=strong | |||
|UniProt=Q6RI45 | |||
|association_with_transcript=-86bp_to_NM_153252,uc004edt.2,uc004edu.2,uc004edv.2,uc004edw.2,uc004edx.2,uc004edy.2,uc004edz.2,uc004eea.2,uc004eeb.2_5end | |||
|cluster_id=chrX:80065319..80065351,- | |||
|description=CAGE_peak_3_at_BRWD3_5end | |||
|id=chrX:80065319..80065351,- | |||
|ontology_enrichment_celltype=CL:0000738!1.05e-22!140;CL:0002087!7.07e-19!119;CL:0002031!8.74e-19!124;CL:0000037!1.42e-18!172;CL:0000566!1.42e-18!172;CL:0002032!6.85e-17!165;CL:0000837!6.85e-17!165;CL:0000988!5.15e-16!182;CL:0000766!9.27e-13!76;CL:0000557!2.70e-11!71;CL:0000860!3.17e-11!45;CL:0000839!1.30e-10!70;CL:0002057!2.43e-10!42;CL:0002009!6.62e-10!65;CL:0002194!1.06e-09!63;CL:0000576!1.06e-09!63;CL:0000040!1.06e-09!63;CL:0000559!1.06e-09!63;CL:0000763!6.90e-09!112;CL:0000049!6.90e-09!112;CL:0000542!9.47e-09!53;CL:0000051!9.47e-09!53;CL:0000838!1.76e-08!52 | |||
|ontology_enrichment_celltype_v019=CL:0000860;3.78e-10;33!CL:0002057;3.78e-10;33!CL:0000576;3.45e-08;48!CL:0002087;7.09e-08;104!CL:0000473;2.86e-07;39!CL:0000234;2.86e-07;39!CL:0000766;4.73e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.37e-24,136;CL:0002087,2.13e-19,115;CL:0002031,1.13e-18,120;CL:0000037,4.78e-18,168;CL:0002032,4.77e-16,161;CL:0000837,4.77e-16,161;CL:0000988,5.77e-16,177;CL:0000766,1.78e-12,72;CL:0000860,4.89e-12,42;CL:0002057,4.89e-12,42;CL:0000473,8.63e-11,48;CL:0000234,8.63e-11,48;CL:0000557,1.06e-10,67;CL:0000542,7.57e-10,53;CL:0000051,7.57e-10,53;CL:0000839,1.33e-09,66;CL:0000838,1.67e-09,52;CL:0002009,3.95e-09,61;CL:0002194,5.92e-09,59;CL:0000576,5.92e-09,59;CL:0000040,5.92e-09,59;CL:0000559,5.92e-09,59;CL:0000763,1.77e-07,108;CL:0000049,1.77e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;4.01e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!1.86e-14!115;UBERON:0002390!8.29e-13!102;UBERON:0003061!8.29e-13!102;UBERON:0002193!1.49e-11!112;UBERON:0002371!5.82e-09!80;UBERON:0001474!9.86e-09!86;UBERON:0001049!5.10e-07!57;UBERON:0005068!5.10e-07!57;UBERON:0006241!5.10e-07!57;UBERON:0007135!5.10e-07!57;UBERON:0003080!5.34e-07!42 | |||
|ontology_enrichment_uberon_v019=UBERON:0000922;1.85e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.73e-12,98;UBERON:0003061,1.73e-12,98;UBERON:0002193,1.11e-10,108;UBERON:0007023,3.38e-09,114;UBERON:0002371,3.44e-08,76;UBERON:0002405,3.41e-07,93;UBERON:0001474,4.43e-07,82 | |||
|phase1_expression=0.181678379270557,0,0.140954404095971,0,0.446961094427288,0,0,0,0.522371256399677,0,0,0,0.263766978228454,0.37129905888014,0.331397375727916,1.34465029290355,0,0,0.487932798790507,0,0,0,0.85870796139317,1.23186982565596,1.25542639594803,3.132949635666,2.95562122019805,2.04648031415566,1.57345710739562,1.53531759238885,0.928896739896456,0,0,0.369754010166788,0.542270404062111,1.13735385989937,1.17440175733939,0.553995408531877,1.60435557976113,3.47217393145363,3.13481663935894,1.94336199611388,2.57575567634187,2.90796477559129,3.77875943688809,2.91100873425379,2.32429036905685,3.28934310417461,0.309706370895104,2.01384674625505,1.7931249457037,1.6553756092201,3.10271112662957,3.87290810150296,1.35426486594342,2.25890807451126,1.63743690034707,1.34834090667051,3.67300670845083,1.92557416245656,1.27867425159808,0.989553900560148,2.59302754908121,0,2.32167390902867,4.53908179752912,1.86846674698672,4.52247597462138,2.08593167368081,0.868755378820466,1.21079900526674,2.94622108790052,1.58231193720442,1.26753171787165,1.27562579979026,1.25795187305026,2.69588714751588,1.05123824989054,1.12507910687956,0.570025487482497,1.59133341759272,1.46131323011707,3.51992488922645,4.36910889009705,1.77901850772711,2.56038133539904,5.60554381850417,3.4485146397269,1.98313461835459,1.90810750907073,1.1384259382189,5.28513470433845,6.49864487812889,0,2.80254281490768,1.31692042387539,2.75393678159366,1.96505381374582,1.02800749499755,1.5046784585161,1.30368906653436,1.4203434172042,0,0.334231370655521,0.883817722424512,0.443067789167242,0.541607727530031,0.896639238079726,1.43065282315866,0.328875809207352,0,0.579606171470105,1.18629250529648,0.802622484269139,0,0.566546713487831,0.383220493601921,1.03088233644789,0.253019692019503,3.18565414324097,1.95325036156926,1.90090408889675,2.25862678616659,1.79181255616186,1.24930726552346,3.31488152861624,2.46338399076314,2.21767417547206,1.33720097891754,2.60683926989038,2.43806866313962,0,0.12786256184353,0,0,0.434539556882471,0,0.486634870302636,0.472674085820339,0.886917589850256,0.702678285545008,0.851363990735132,0,0,1.29818957461873,0.870648686496336,0.531831842075461,0.953962497221368,1.71598473234038,1.11437250398869,0.39752481473341,0,0,0,0.419499436209906,0.275118041940067,0.417989933073621,0.775250277507987,0.71153252537342,0.66944122552934,0,0,0,0,0,1.3394959242612,0.898117490504679,0.675668882899933,0,0,0.549605231791222,7.9068250461638,0,0,0.993943903390637,0.379891534993739,0.529636723252875,0.573673241497627,0,0,0,0.74000264525148,0.311211035399766,0.942974704487816,0.653847612453835,0,0.576175924479999,0,0,0,0.298897361103602,0.587172493218824,0,0.280901613404497,0.61246251376468,0.737005903870608,0.413303124703062,1.18800285728205,0.247266929278557,0,0,0.336672227908132,0.875829639103749,0,0,0.30648779579902,0.300476117813194,0.680593098960126,0.538168907066586,0.640672166455702,0.423863802319124,0,0.309157587715317,0.515281080091258,0.18611685633159,0.843881661206331,0.389748020644795,1.00973509697646,0.368199594569197,0.161646056818812,0.355009592516614,0.604512589365842,0.339121184620975,0.386521706326594,0.272746120590835,1.43402297694502,4.39105342066543,1.72288698817931,1.2781333715647,1.7622379352613,3.02785021050754,0,1.56449532329816,0.643240938192885,0,0,0,0.236613600079688,0,0,0.441175890929576,0.217879444092406,0.237270619111097,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,0,1.96565443335525,0.590789906681404,1.32438929824395,0.614942192715568,0.514703430895577,1.09750285408626,1.1240175325762,0.603173834469785,1.29623823221941,0.325808305310325,0,0,0.927443239800615,0.234817388471643,0.577465791044295,0,0.951270761172991,0,0,2.21595305478658,0.234004265139238,0.297262324577456,0,0,0.141775097242386,0.179117045405697,0.581267877027924,0,0.492663237895943,1.49682337822484,4.14656231081544,3.45887888200707,3.53478813593864,0.380987365753014,0,0,0,1.33675740514321,0.901029173531752,1.14330573052231,0.112131084345361,0,0.22001485746285,0.129271715757778,0,0,0.26593811658487,0,0.257207374262142,0,0.266422179016099,0.142977993658148,0,0,0.325736184293735,1.06617584622764,0.791951872933429,0.301439377059586,0,0.099972991182057,0,0.502257091432126,2.10833939483032,0,0,0,0.579125226670317,0.61642896765115,0.537182889719687,0.112085143993527,1.37921532141349,1.94064817373566,2.31017465303547,0.76228387266739,0,0.773288812777695,1.00509759200609,1.91381625495949,18.7251755986796,8.97484377612075,9.53155680902882,0.36807447515742,0,0.271265023699736,1.24782516918484,0.356857977594324,0.630809660135739,0.702848489956279,0.300946099727719,0,0,0,0,0.434418072340414,0.391602314925481,0.343143423810856,1.6541442089831,4.09856981555372,2.02782359826544,0.303127571446259,0,0,0,0.460385919864187,0.280660094433074,0,0,0,0,0,0.710246901252508,0.0821271560138091,0.519254429183621,0.116210378459959,1.32945394550784,0,0.552485933615378,0.574072240823034,0,0.131124414959424,0,1.00119938235739,0,0,0.633309773357254,0,0.170093705276516,0.863663664408557,0,0.270946437543853,0,0,0,0,0.657779629937804,0.522870902049801,1.02580050046556,0,0,1.44257416306811,0.640986253728404,1.48517099857058,0.574265537996172,0,1.6068392984416,0.096670718292122,1.23238893691716,0.15350367472613,0.964856007391714,1.07420244868274,0.725083469571143,0.426133137080504,0.356128142586949,0,0.192190067365106,0.510450849978337,0.6069466851333,0.464845549297286,0.31481234683064,0,0,0.532306030317022,0,0.37064843820784,0.143124886741991,0,0,0.38126038784765,0.255897791311334,0,0.95460974377781,0,0.719489830333259,0.823611089208164,0.471249609382746,0,1.58510321173008,0,0,0.243713489631284,0,0.136499911407986,0.282810863907425,1.13008116620243,0,0,0.438450885253763,0,0,0.202910376962704,0.30982349809975,0.563391205064483,0.286822704408103,0,0.35667105148125,0.709522128141196,1.26664581178598,0.658589785919804,0,1.04980416073495,0.192444225451024,0,0,0.847294206991012,0,1.68471475667626,0.443430153536676,2.29723400206959,4.05958087385735,3.0585488285695,7.97506062043828,5.00286728461357,2.05681136543097,0,1.08006287447623,6.34500141035416,0.427296284509893,0,0.245040215981032,1.85803175125719,0.28853842595289,1.63626239701352,0.478278818186467,0,0.766021480529467,0.846694330895531,0.324621940274555,0.842391534340376,1.14117339516596,0.156679895773023,0,1.01575066680962,0.802940375518498,1.00899853595524,1.27753871307098,0,0.921722292925374,0.223676107892416,0.667396566847634,0.19538809540204,0,1.23087398947712,0.540911356951966,0.99921590399346,0,0.37428108081644,0.879049075631364,2.6699314784893,1.00299045849731,0,1.43246690842614,0.890894042497916,2.15012491469462,0.994147647766298,3.09472716103128,1.11308705022906,0.494411622680279,1.68900326502395,3.38721580026819,2.48655523978033,1.76352923497993,1.53403023753232,2.21552649829925,0.311039587661807,1.16828856491525,0.358042349351218,1.02314474045374,1.7755813014648,11.974154617347,0,0.969332746095218,0.649376687132959,0,0,0.787139999965761,9.42499448065232,0.1137934482855,0.508507300585533,0.945550727071745,5.8606373451049,4.08246458736556,0.694499979733169,1.77148277162768,0.844175070377856,0,5.86070077635491,1.77328571372128,0.658156191461918,0.32681539055697,1.67308493134324,2.23155749661011,0.227884111694002,4.38071418337314,1.97466817701499,0.869178975376065,0.957003479195758,0.549585560411174,1.06606955203727,0,0.470940769185074,1.16348177330109,0.451191321234361,1.17637520590644,0.671286347903371,0.189753732724185,1.27149263184303,1.47698645169619,0.326465616318295,0.706765357169704,3.46221823587346,0.995261931078505,1.94606641907346,15.2757536233406,0.593042257361244,0.617819694732514,1.46190729307638,0.943615861729479,0,1.40558667435203,0.91227394607833,0.586993856796269,0.485560759068186,2.36750641709634,13.308978765353,1.83643656978294,1.13735843331278,0.60129367765797,1.03688191397247,0,0.330991955875499,0,0,1.13843818411917,0.554698692052555,0,0.391969589657511,0.870592065804026,1.04836000945218,0.171986032471617,1.9351266257817,1.46178634172371,2.38134825454307,2.32773639572207,0.882561266915003,3.16373037092745,2.05562886970126,0.596143835108969,0.696418755514666,0.782205530939212,0.801588202515337,0.85381197895741,0.39961921916426,0.864542502924636,0,1.20116498503375,0,0.49701014226173,0.942776138467182,0,0.209205692624666,0.203996435272644,0.577901179803038,3.60252173225874,2.19048606227189,1.27746588066972,0.859530882839914,0.262887354279314,1.95497680890578,2.52076466412852,0.717873024576814,0.998395002494955,0.429226048136571,0.89268582976749,1.2764859772478,0.720599767084807,0,1.26053091691558,0.494495150286999,0.606631894687664,0.492137407573744,0.423366660328922,1.59045937961861,2.72406812223151,2.89355667237035,4.40126197111148,2.49264202817511,0.449947783103001,5.41661368190565,0.91124334987037,0.335434687599266,0.315222829196793,1.10154635083496,1.6896053843105,0.179287339332845,0.959575986597226,0.714695326373367,0.662091970365432,1.27134268827375,0,0,0,2.39460383124975,0.738832686744051,0.340776043570843,0.906496732161005,1.46552233678082,3.97520666736664,2.45637617086946,2.11572162788304,0.855434189421647,0.704815022316672,2.99004755189545,0.471612915298998,7.45630299624952,3.47316215268366,2.37133958277533,0.974340787047167,0,0,0.7520696820681,0.306345576763462,0.983617892129413,5.18278517625773,0,1.70836770862748,3.004582336956,1.14681839138014,2.10765197920019,0.683060432355218,4.70385358783185,0.499921631848426,0.454947352624943,0.856396000634902,1.88212655758537,3.27834434064817,2.17381542916238,0.597019211547496,0.467426619694449,0,0.568209015825267,0.50313580350515,0.889811221596536,0.686520205190771,0.453692771289717,0.932623203496683,0.295710299979268,0.318593534327405,2.24901556081802,1.70789252563885,0.414706207840855,0.53168342911599,0,0.450772826991655,0,0.406870733204662,1.27294061441792,0.322231671127465,0.464033759878494,0,0,0,0,2.52369796457302,1.54095864325843,0.643324774124777,0,0.680117776536817,0.926089897295336,0.244736704506468,1.07453304648892,0.617602894321944,0,0.353378291891762,0.38582807654183,0.168942440653073,0,0.345430341731199,0,1.52084279766904,0.779441235357554,1.72724292407372,0,0.982829546539238,0.983091635014877,0.633936370075881,0.19998739585493,0.533458648470704,0.344429959321631,0.567515953566836,0,1.258915569475,0,1.02315497042921,0.754773679776773,0.786329709279482,1.20130602011215,1.3578602396322,1.2754495206101,4.58562327758308,0,0.636008701306837,1.57723490002507,0.80057074828547,0.352675943690684,0,1.02766760154335,1.41696576325585,1.75597244962866,3.07674546361133,4.28521883576921,0.138314504928436,1.61475645631851,1.42769420259154,0.392590874004102,0.353909170043221,1.28400018965175,0.115525666150338,0.381382095467167,0.690359926060101,0.795664888465099,0.902523940191087,0.60511520611056,1.56302802246618,5.50004058410987,0.982631505060581,3.252833896775,0.405225507710368,0,0.826747186004736,0.760989722326882,4.92277328116398,0.548257766857182,0.496211178389294,0.527613733078862,0.383287282918786,1.60710550763486,3.69912094440706,1.21393120847326,2.27662191351298,0.709618961301111,1.61327582578091,2.05785611324902,0.747667062745149,0.855046056317038,0.827356886187777,1.22354542081276,1.64835494986079,3.14231179832004,4.20408244970683,5.47895232305697,1.29556554731173,0.9555033757741,1.78691360441641,0.94808167039636,1.04617282831313,0.869291361512897,0,0.207216164163037,0.17071847709395,1.38251932362818,0.860454717640555,1.30165200803622,1.27820107138737,0.423387050190929,0.4582137370881,0.31020638566432,0,0,0.392600934460972,0.609589624911347,0.647428837187895,0.615976841137482,4.6392577253528,3.88568794447312,1.40363678077263,2.78531085225916,0.83244063544298,0.67767649223376,4.06779911958088,0.754814217833368,2.70109553377806,3.93407208907123,0.470317296361523,1.47088993052343,0.942706188406504,6.87079634902308,1.78227840196252,0.8453114551668,0.849635573439084,0.939839179798536,1.54698931136585,1.79894080664872,0,0,0.160482733378337,1.46067277649303,0.917458566809082,1.00337708206016,3.31320280605688,0.475940431336403,2.61810414204226,1.5870805215462,0.371995018166751,0,0,2.64949492153666,6.33740317389434,2.15387451719443,11.8307042500699,13.360870263278,57.8018918074174,7.52122617877125,3.63737751447549,1.33982065078089,1.65833887891756,1.86179392551411,0.639701945702943,3.57096647195611,2.84191203278427,3.35203457197633,1.12131862580613,1.01835453245064,1.41482032270754,0.435433495793923,2.05339980651169,1.27968900727716,1.07583308089015,2.32862249582209,2.03508171527436,1.81436487992116,0,0.179650404213174,0,0.855690109280065,3.66206560484165,2.66302709674205,1.40891655513718,1.9234109538194 | |||
|short_description=p3@BRWD3 | |||
}} |
Latest revision as of 12:31, 16 September 2015
Short description: | p3@BRWD3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_BRWD3_5end |
Coexpression cluster: | NA |
Association with transcript: | -86bp_to_NM_153252, uc004edt.2, uc004edu.2, uc004edv.2, uc004edw.2, uc004edx.2, uc004edy.2, uc004edz.2, uc004eea.2, uc004eeb.2_5end |
EntrezGene: | BRWD3 |
HGNC: | 17342 |
UniProt: | Q6RI45 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.37e-24 | 136 |
nongranular leukocyte | 2.13e-19 | 115 |
hematopoietic lineage restricted progenitor cell | 1.13e-18 | 120 |
hematopoietic stem cell | 4.78e-18 | 168 |
hematopoietic oligopotent progenitor cell | 4.77e-16 | 161 |
hematopoietic multipotent progenitor cell | 4.77e-16 | 161 |
hematopoietic cell | 5.77e-16 | 177 |
myeloid leukocyte | 1.78e-12 | 72 |
classical monocyte | 4.89e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.89e-12 | 42 |
defensive cell | 8.63e-11 | 48 |
phagocyte | 8.63e-11 | 48 |
granulocyte monocyte progenitor cell | 1.06e-10 | 67 |
lymphocyte | 7.57e-10 | 53 |
common lymphoid progenitor | 7.57e-10 | 53 |
myeloid lineage restricted progenitor cell | 1.33e-09 | 66 |
lymphoid lineage restricted progenitor cell | 1.67e-09 | 52 |
macrophage dendritic cell progenitor | 3.95e-09 | 61 |
monopoietic cell | 5.92e-09 | 59 |
monocyte | 5.92e-09 | 59 |
monoblast | 5.92e-09 | 59 |
promonocyte | 5.92e-09 | 59 |
myeloid cell | 1.77e-07 | 108 |
common myeloid progenitor | 1.77e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.73e-12 | 98 |
blood island | 1.73e-12 | 98 |
hemolymphoid system | 1.11e-10 | 108 |
adult organism | 3.38e-09 | 114 |
bone marrow | 3.44e-08 | 76 |
immune system | 3.41e-07 | 93 |
bone element | 4.43e-07 | 82 |