FFCP PHASE1:Hg19::chr1:236030258..236030273,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1130 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1968 | |||
|TSSclassifier=strong | |||
|UniProt=Q99698 | |||
|association_with_transcript=-38bp_to_ENST00000389793,ENST00000389794,NM_000081,uc001hxj.2,uc001hxn.1_5end | |||
|cluster_id=chr1:236030258..236030273,- | |||
|description=CAGE_peak_6_at_LYST_5end | |||
|id=chr1:236030258..236030273,- | |||
|ontology_enrichment_celltype=CL:0000763!1.17e-29!112;CL:0000049!1.17e-29!112;CL:0000766!8.32e-29!76;CL:0000557!1.61e-27!71;CL:0000839!8.37e-26!70;CL:0002009!4.33e-24!65;CL:0002194!2.94e-23!63;CL:0000576!2.94e-23!63;CL:0000040!2.94e-23!63;CL:0000559!2.94e-23!63;CL:0002057!4.18e-23!42;CL:0000037!7.55e-21!172;CL:0000566!7.55e-21!172;CL:0000988!1.50e-20!182;CL:0000860!1.99e-20!45;CL:0002032!2.13e-19!165;CL:0000837!2.13e-19!165;CL:0000738!3.28e-19!140;CL:0002031!3.35e-14!124;CL:0002087!3.46e-13!119;CL:0000219!6.66e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.08e-25;33!CL:0002057;6.08e-25;33!CL:0000576;1.07e-24;48!CL:0000766;5.53e-22;69!CL:0000473;3.17e-21;39!CL:0000234;3.17e-21;39!CL:0000763;5.28e-16;100!CL:0002393;1.51e-12;6!CL:0002397;1.51e-12;6!CL:0000226;1.05e-07;3!CL:0000842;1.05e-07;3!CL:0000094;1.69e-07;8!CL:0000738;4.13e-07;136!CL:0000988;5.83e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000763,1.08e-51,108;CL:0000049,1.08e-51,108;CL:0000766,6.96e-44,72;CL:0000557,1.15e-37,67;CL:0000860,3.13e-36,42;CL:0002057,3.13e-36,42;CL:0000839,5.60e-36,66;CL:0000473,1.45e-35,48;CL:0000234,1.45e-35,48;CL:0000037,9.21e-35,168;CL:0002194,9.06e-34,59;CL:0000576,9.06e-34,59;CL:0000040,9.06e-34,59;CL:0000559,9.06e-34,59;CL:0002009,2.36e-32,61;CL:0002032,2.79e-32,161;CL:0000837,2.79e-32,161;CL:0000988,3.65e-32,177;CL:0000738,6.71e-28,136;CL:0002087,1.80e-18,115;CL:0002031,2.44e-17,120;CL:0002393,3.45e-11,9;CL:0002397,3.45e-11,9;CL:0000134,3.65e-11,354;CL:0002320,1.22e-10,361;CL:0000219,1.35e-10,386;CL:0000226,6.73e-08,3;CL:0000842,6.73e-08,3;CL:0000094,1.30e-07,8;CL:0000048,4.51e-07,427;CL:0000034,8.42e-07,441;CL:0000723,9.09e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;3.18e-28;42!CL:0000049;5.91e-15;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:8692;8.89e-10;31 | |||
|ontology_enrichment_disease_v019_2=DOID:8692,3.58e-10,31;DOID:1240,1.95e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0002390!2.84e-33!102;UBERON:0003061!2.84e-33!102;UBERON:0002193!1.93e-31!112;UBERON:0002371!4.68e-25!80;UBERON:0001474!5.41e-23!86;UBERON:0004765!1.78e-18!101;UBERON:0001434!1.78e-18!101;UBERON:0002405!1.04e-16!115;UBERON:0000178!4.28e-09!15;UBERON:0000179!4.28e-09!15;UBERON:0000463!4.28e-09!15;UBERON:0003081!1.38e-08!216;UBERON:0007023!1.11e-07!115;UBERON:0002204!7.06e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;5.49e-16;15!UBERON:0000179;5.49e-16;15!UBERON:0000463;5.49e-16;15!UBERON:0002390;7.96e-10;32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.75e-46,98;UBERON:0003061,1.75e-46,98;UBERON:0002193,7.19e-41,108;UBERON:0002371,6.05e-32,76;UBERON:0001474,7.89e-29,82;UBERON:0002405,1.75e-27,93;UBERON:0004765,2.51e-25,90;UBERON:0001434,9.60e-22,100;UBERON:0003081,5.04e-19,203;UBERON:0000178,1.44e-16,15;UBERON:0000179,1.44e-16,15;UBERON:0000463,1.44e-16,15;UBERON:0002204,1.64e-10,167;UBERON:0002384,6.25e-10,371;UBERON:0000926,4.33e-09,315;UBERON:0004120,4.33e-09,315;UBERON:0006603,4.33e-09,315 | |||
|phase1_expression=0,0,0,0,0,0.872338524100369,2.53299878168311,0,0,0,0.697801167972428,0.218441372130172,0,0.495065411840187,0,0,0,0,0,0,0,0,0.85870796139317,0.273748850145768,0.125542639594803,0.0764134057479513,0.246301768349837,0.157421562627358,0.393364276848904,0.383829398097213,1.54816123316076,0,0,0,0.0774672005803016,0,0.880801318004542,3.32397245119126,1.80490002723128,1.95309783644267,0.223915474239924,0.32389366601898,0.515151135268373,1.59938062657521,1.13362783106643,1.4555043671269,1.85943229524548,2.46700732813095,0.619412741790207,0.863077176966451,1.2808035326455,0.236482229888585,2.06847408441971,1.93645405075148,2.70852973188684,1.12945403725563,1.36453075028923,0.674170453335254,0.918251677112708,0.641858054152187,0.639337125799041,0.659702600373432,0.797854630486527,1.27867425159808,3.77272010217159,2.8369261234557,1.86846674698672,0.75374599577023,1.0429658368404,2.17188844705117,1.81619850790011,2.20966581592539,0.632924774881769,1.26753171787165,1.4882300997553,1.25795187305026,1.46027220490444,1.35159203557356,2.08943262706204,0.570025487482497,0.59675003159727,1.82664153764634,0,0.546138611262131,0,0.426730222566507,1.20118796110804,0,0,0,0.569212969109448,1.17447437874188,0.382273228125229,0,0,1.05353633910031,0.196709770113833,0,0,0.167186495390678,0,0,0,0.111410456885174,0,0,0.270803863765016,0.128091319725675,0.130059347559878,0,0.276350017785848,0,0.14828656316206,0,1.04535523804977,0.226618685395132,0,0,0,0,0,0,0.301150238155546,0.127986611154418,0,0,0,0.201606743224732,0,0.724122019413995,0,0,0,0.361439152384566,0,0.144846518960824,0,0.486634870302636,0.0945348171640679,0.221729397462564,0.087834785693126,0.196468613246569,0,0,0.97364218096405,0.696518949197069,0.531831842075461,0.476981248610684,0,0,0.198762407366705,0,0,0,0,0,0,0.775250277507987,0.35576626268671,0,0,0,0,0,0,0.267899184852239,0.22452937262617,0.112611480483322,0,0,0,2.63560834872127,3.87780264148325,0,0,0,0.794455084879313,0,0.354668382198357,0,0,0,0.311211035399766,0.269421344139376,0.163461903113459,0.605429710579726,0,0,0,0,0.448346041655403,0,0.647491777472526,0,0,0,0.413303124703062,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0,0,0,0.150238058906597,0,0.179389635688862,0,0.211931901159562,0.600182192168805,0.309157587715317,0.515281080091258,0.18611685633159,0,0.389748020644795,1.00973509697646,0.368199594569197,0.484938170456436,0,0.10075209822764,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0.464367928031979,0,0,0,0,0,0,0,0.134831308160164,0,0,0,0,0,0,0,0,0.590789906681404,0.882926198829301,0.122988438543114,0,0,0,0.100528972411631,0.370353780634118,0,0,0,0.231860809950154,0,0.433099343283221,0,0.190254152234598,0,0,1.23108503043699,0.702012795417713,0.445893486866185,0.93733833986777,0,0,0.268675568108545,0.290633938513962,0,0.492663237895943,0.792435906119034,2.48793738648926,2.45003920808834,5.80715193761348,0.317489471460845,0.763976851116555,0,0,1.85089486865982,1.50171528921959,3.14409075893636,0.336393253036082,0,0.07333828582095,0,0,0,0.26593811658487,1.04007436911366,0.257207374262142,0,0.532844358032199,0,0,0,0.325736184293735,0,0,0.602878754119172,0,0.199945982364114,0,0.502257091432126,2.10833939483032,0.239624855491583,0,0,0.579125226670317,0.410952645100767,0,0.112085143993527,0.394061520403854,0.862510299438069,0.513372145118994,0,0,0,0,0,5.99205619157746,0,4.55857064779639,0.12269149171914,0,0.271265023699736,0.415941723061614,0,0,0,0,0,0,0,0,0.0868836144680828,0.195801157462741,0.686286847621712,3.3082884179662,1.94142780736755,2.24127871387233,0,0,0.30239029332968,0,0,0.280660094433074,0.128139149255701,0.511707249066704,0.160853921143607,0,0,0,0,0,0.348631135379878,0.362578348774867,0,0.184161977871793,0.229628896329213,0.182091168006717,0,0,0.0770153371044148,0,1.46139224653261,0.422206515571503,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0.219259876645935,0.261435451024901,0,0,0.325378394664303,0.412164046590889,0.183138929636687,0.165018999841176,0,0,0,0,0.462145851343933,0.307007349452259,0.413509717453592,0.107420244868274,1.0151168573996,0.0852266274161009,0.267096106940212,0,0,0,0.10115778085555,0,0,0,0.616067160352178,0,0,0,0.143124886741991,0.372158369359667,0.632758849437452,0,0,0,0,0,0.179872457583315,0,0.117812402345686,0,0,0,0,0.243713489631284,0,0.409499734223957,0.424216295861138,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0.354761064070598,0.211107635297664,0,0,0.349934720244983,0,0,0,0.376575203107117,0,0,0.443430153536676,0.229723400206959,2.53723804616085,1.52927441428475,1.70894156152249,0.952927101831156,1.64544909234478,1.94541993357815,2.16012574895246,1.58625035258854,0,0,0,0.743212700502875,0.144269212976445,0.355709216742071,0,0,0.191505370132367,0,1.62310970137278,0,0.456469358066384,3.13359791546046,2.50634477090067,0.169291777801603,1.92705690124439,3.63239472943886,6.38769356535489,1.03051603426729,12.9041121009552,8.4996920999118,6.84081481018825,5.86164286206121,0.556812347790485,1.23087398947712,0,0.33307196799782,0,0,0.73254089635947,0.242721043499027,0.111443384277478,0,0,0.296964680832639,0,0,0.562677665642051,0.111308705022906,0,0,0.398495976502139,0,0,0.818149460017238,0.123084805461069,0.311039587661807,0.179736702294654,0,5.11572370226872,0.690503839458535,4.7896618469388,0,1.93866549219044,0.556608588971108,0,0,0.524759999977174,0,0,0.254253650292766,0,0.344743373241465,0.291604613383254,0.520874984799877,0.885741385813839,0.60298219312704,0,0.331737779793674,0,0,0,0.41827123283581,0.461701551022782,0.227884111694002,0.23056390438806,0.0897576444097721,0,0,0.366390373607449,0,0,0.156980256395025,0,0,0,0,0,0,0,0,0,0,0,0.442287822516696,0,0.593042257361244,0.123563938946503,0.626531697032732,0.269604531922708,0,0.234264445725339,0,0.391329237864179,0.485560759068186,0,0,0.30607276163049,0.63186579628488,0.751617097072463,0.311064574191741,0,0,0.313932918407225,0,0.284609546029793,0.554698692052555,0,0.0979923974143777,0.0870592065804026,0.34945333648406,0.859930162358083,0,0.0730893170861856,0,0.484945082442097,0,0.225980740780532,0.274083849293502,0.19871461170299,0.696418755514666,0,0,0,0.39961921916426,0.144090417154106,0.229073192331831,0,0,0,0,0.67952103036807,0.313808538937,0.305994652908965,0.288950589901519,0,0.410716136675979,2.55493176133945,0,0.525774708558629,1.39641200636127,0.458320848023367,0.717873024576814,0,0,0,0.604651252380536,0,0,0.0787831823072236,0,0.0674035438541849,0.0984274815147488,0.0846733320657845,0,0.544813624446302,0,0,0,0.674921674654501,0.77380195455795,0.425246896606173,0.335434687599266,0.236417121897595,0.104909176269996,0,0,0,0,0,0.25426853765475,1.62899880526114,0.864221491201268,0,0,0.082092520749339,0.511164065356265,0.226624183040251,0.146552233678082,0,0.258565912723101,0.39669780522807,0.342173675768659,0,0.747511887973863,0.471612915298998,0.414239055347196,0.496166021811951,0.197611631897944,0.121792598380896,0,0,0.5013797880454,0.306345576763462,0.327872630709804,0,0,0.244052529803926,0.3755727921195,0,0.443716206147409,0.434674820589684,0.276697269872462,0.124980407962107,3.1846314683746,0,0.235265819698172,0,0.144921028610825,0.298509605773748,0.701139929541673,1.10961172300523,0.189403005275089,0.50313580350515,0,0.228840068396924,0.756154618816195,0.15543720058278,0,0.796483835818512,0,0.155262956876259,0.414706207840855,0.265841714557995,0,0.300515217994437,0,0.406870733204662,0,0.214821114084977,0,0.398095888698616,0,0.343395705182793,0,0,0.57785949122191,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0.276516872303462,1.16916185303633,1.32864840313363,2.45348091383766,0,0,0.211312123358627,0.39997479170986,2.13383459388282,0,0.567515953566836,0.552317850755522,0,0,0.127894371303652,0.107824811396682,0.157265941855896,0.109209638192014,0.169732529954025,0,0.123935764259002,0,0.318004350653419,0,0,0,0.3062454773532,0.706521476061055,0,0.478901577171454,0.205116364240755,0.252071696221718,0.138314504928436,0.322951291263702,0,0.294443155503077,0,0.183428598521679,0,0,0,0.795664888465099,0.300841313397029,0,0,0,0,0.295712172434091,0.472763092328763,0.781078098613847,0.206686796501184,0.570742291745161,0.546974809018219,0,0.496211178389294,0,0.127762427639595,1.07140367175657,1.00885116665647,0,0.91064876540519,0.0887023701626388,0,0,0.543757863814654,0.197318320688547,0.236387681767936,0.222462803784138,0.39246546425257,0,0,0.913158720509496,0,0,0.428859265059938,0,0.23248285073625,0.347716544605159,0,0.414432328326074,0.17071847709395,0,0,0.354996002191696,0.340853619036631,0.846774100381858,0.4582137370881,0,0,0.223710863595585,0.098150233615243,0.121917924982269,1.94228651156368,0,0,0.485710993059139,0.233939463462106,0.397901550322736,0,0.11294608203896,0,0.301925687133347,0.231522474323834,0,0.940634592723046,0.490296643507811,0.235676547101626,0,1.18818560130834,0,0.169927114687817,0.657887425858975,0.773494655682926,0,0,0.352894871715692,0,0.730336388246517,0.458729283404541,0.430018749454354,0,0.271965960763659,0.436350690340377,0,0,0,0,0,0,0,0,0,0.0918948995348449,0,0.606229585745915,0.803892390468535,0,0.103432995861895,0.639701945702943,0.23806443146374,1.48554492622814,3.41410928627218,0.33639558774184,0.190941474834495,0.404234377916439,0.217716747896961,0.684466602170562,0.404112318087525,0.358611026963382,0,0.162806537221949,0.106727345877715,0,0.269475606319761,2.34640942403454,0.244482888365733,0,0,0.201273793591026,0 | |||
|short_description=p6@LYST | |||
}} |
Latest revision as of 13:15, 16 September 2015
Short description: | p6@LYST |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_LYST_5end |
Coexpression cluster: | NA |
Association with transcript: | -38bp_to_ENST00000389793, ENST00000389794, NM_000081, uc001hxj.2, uc001hxn.1_5end |
EntrezGene: | LYST |
HGNC: | 1968 |
UniProt: | Q99698 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.75e-46 | 98 |
blood island | 1.75e-46 | 98 |
hemolymphoid system | 7.19e-41 | 108 |
bone marrow | 6.05e-32 | 76 |
bone element | 7.89e-29 | 82 |
immune system | 1.75e-27 | 93 |
skeletal element | 2.51e-25 | 90 |
skeletal system | 9.60e-22 | 100 |
lateral plate mesoderm | 5.04e-19 | 203 |
blood | 1.44e-16 | 15 |
haemolymphatic fluid | 1.44e-16 | 15 |
organism substance | 1.44e-16 | 15 |
musculoskeletal system | 1.64e-10 | 167 |
connective tissue | 6.25e-10 | 371 |
mesoderm | 4.33e-09 | 315 |
mesoderm-derived structure | 4.33e-09 | 315 |
presumptive mesoderm | 4.33e-09 | 315 |
Ontology term | p-value | n |
---|---|---|
myeloid leukemia | 3.58e-10 | 31 |
leukemia | 1.95e-07 | 39 |