FFCP PHASE1:Hg19::chr1:243651053..243651073,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10806 | |EntrezGene=10806 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10671 | |HGNC=10671 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-43bp_to_ENST00000497459_5end | |association_with_transcript=-43bp_to_ENST00000497459_5end | ||
|cluster_id=chr1:243651053..243651073,+ | |||
|coexpression_cluster_id=C3957 | |||
|description=CAGE_peak_4_at_SDCCAG8_5end | |description=CAGE_peak_4_at_SDCCAG8_5end | ||
|id=chr1:243651053..243651073,+ | |id=chr1:243651053..243651073,+ | ||
|ontology_enrichment_celltype=CL:0002321!1.39e-09!248;CL:0000066!5.82e-09!254;CL:0000220!6.88e-09!246;CL:1000449!2.03e-08!16;CL:0000039!5.58e-08!7;CL:0000586!5.58e-08!7;CL:0002077!7.51e-08!33;CL:0002368!4.45e-07!13;CL:1000612!4.56e-07!7;CL:1000746!4.56e-07!7;CL:1000497!5.31e-07!18;CL:0002518!5.31e-07!18 | |ontology_enrichment_celltype=CL:0002321!1.39e-09!248;CL:0000066!5.82e-09!254;CL:0000220!6.88e-09!246;CL:1000449!2.03e-08!16;CL:0000039!5.58e-08!7;CL:0000586!5.58e-08!7;CL:0002077!7.51e-08!33;CL:0002368!4.45e-07!13;CL:1000612!4.56e-07!7;CL:1000746!4.56e-07!7;CL:1000497!5.31e-07!18;CL:0002518!5.31e-07!18 | ||
|ontology_enrichment_celltype_v019=CL:0000039;1.69e-13;7!CL:0000586;1.69e-13;7!CL:0002322;3.41e-12;5!CL:0000148;7.17e-12;10!CL:1000449;7.63e-12;15!CL:1000497;3.11e-10;17!CL:0002518;3.11e-10;17!CL:0002681;5.35e-09;12!CL:0002584;5.35e-09;12!CL:1000746;1.23e-08;7!CL:1000612;1.23e-08;7!CL:0002567;1.47e-08;3!CL:0002188;2.58e-08;5!CL:0000147;3.89e-08;14!CL:0000710;8.17e-07;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.77e-19,253;CL:0000039,1.45e-13,7;CL:0000586,1.45e-13,7;CL:0002322,4.11e-12,5;CL:1000449,8.86e-12,15;CL:0000148,9.27e-12,10;CL:0000541,9.27e-12,10;CL:1000497,3.54e-10,17;CL:0002518,3.54e-10,17;CL:0002321,1.03e-09,250;CL:0002681,6.16e-09,12;CL:0002584,6.16e-09,12;CL:1000746,1.18e-08,7;CL:1000612,1.18e-08,7;CL:0002567,1.82e-08,3;CL:0002188,2.83e-08,5;CL:0000147,4.64e-08,14;CL:0002076,6.26e-07,42;CL:0000710,8.20e-07,20 | |||
|ontology_enrichment_development_v019=UBERON:0009117;2.00e-08;10!UBERON:0005564;2.00e-08;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000080!3.54e-09!18;UBERON:0002120!3.54e-09!18;UBERON:0004875!3.54e-09!18;UBERON:0005721!3.54e-09!18;UBERON:0005754!3.54e-09!18;UBERON:0007297!3.54e-09!18;UBERON:0006555!1.07e-08!17;UBERON:0005103!1.07e-08!17;UBERON:0000083!1.07e-08!17;UBERON:0009201!1.07e-08!17;UBERON:0004819!1.07e-08!17;UBERON:0006553!1.07e-08!17;UBERON:0003074!1.07e-08!17;UBERON:0003060!1.07e-08!17;UBERON:0004211!2.03e-08!16;UBERON:0001285!2.03e-08!16;UBERON:0007684!2.03e-08!16;UBERON:0003220!2.03e-08!16;UBERON:0004208!2.03e-08!16;UBERON:0003887!5.81e-08!21;UBERON:0004876!9.32e-08!20;UBERON:0001008!3.19e-07!45;UBERON:0000074!4.56e-07!7;UBERON:0001229!4.56e-07!7;UBERON:0001230!4.56e-07!7;UBERON:0005749!4.56e-07!7;UBERON:0004199!4.56e-07!7;UBERON:0004209!4.56e-07!7;UBERON:0004198!4.56e-07!7;UBERON:0007196!7.06e-07!14;UBERON:0001558!7.06e-07!14;UBERON:0006554!8.53e-07!44 | |ontology_enrichment_uberon=UBERON:0000080!3.54e-09!18;UBERON:0002120!3.54e-09!18;UBERON:0004875!3.54e-09!18;UBERON:0005721!3.54e-09!18;UBERON:0005754!3.54e-09!18;UBERON:0007297!3.54e-09!18;UBERON:0006555!1.07e-08!17;UBERON:0005103!1.07e-08!17;UBERON:0000083!1.07e-08!17;UBERON:0009201!1.07e-08!17;UBERON:0004819!1.07e-08!17;UBERON:0006553!1.07e-08!17;UBERON:0003074!1.07e-08!17;UBERON:0003060!1.07e-08!17;UBERON:0004211!2.03e-08!16;UBERON:0001285!2.03e-08!16;UBERON:0007684!2.03e-08!16;UBERON:0003220!2.03e-08!16;UBERON:0004208!2.03e-08!16;UBERON:0003887!5.81e-08!21;UBERON:0004876!9.32e-08!20;UBERON:0001008!3.19e-07!45;UBERON:0000074!4.56e-07!7;UBERON:0001229!4.56e-07!7;UBERON:0001230!4.56e-07!7;UBERON:0005749!4.56e-07!7;UBERON:0004199!4.56e-07!7;UBERON:0004209!4.56e-07!7;UBERON:0004198!4.56e-07!7;UBERON:0007196!7.06e-07!14;UBERON:0001558!7.06e-07!14;UBERON:0006554!8.53e-07!44 | ||
|ontology_enrichment_uberon_v019=UBERON:0006555;7.63e-12;15!UBERON:0004819;7.63e-12;15!UBERON:0001285;7.63e-12;15!UBERON:0007684;7.63e-12;15!UBERON:0001225;5.35e-09;12!UBERON:0008987;5.35e-09;12!UBERON:0000074;1.23e-08;7!UBERON:0001229;1.23e-08;7!UBERON:0000473;8.71e-08;8!UBERON:0001851;5.56e-07;15!UBERON:0000353;5.56e-07;15!UBERON:0002113;9.87e-07;24!UBERON:0011143;9.87e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004211,8.86e-12,15;UBERON:0009773,8.86e-12,15;UBERON:0001231,8.86e-12,15;UBERON:0001285,8.86e-12,15;UBERON:0007684,8.86e-12,15;UBERON:0004208,8.86e-12,15;UBERON:0006555,6.30e-11,16;UBERON:0004819,6.30e-11,16;UBERON:0001225,6.16e-09,12;UBERON:0008987,6.16e-09,12;UBERON:0010532,1.18e-08,7;UBERON:0000074,1.18e-08,7;UBERON:0001229,1.18e-08,7;UBERON:0001230,1.18e-08,7;UBERON:0003220,1.18e-08,7;UBERON:0005749,1.18e-08,7;UBERON:0004199,1.18e-08,7;UBERON:0004209,1.18e-08,7;UBERON:0004198,1.18e-08,7;UBERON:0000473,7.78e-08,8;UBERON:0005103,1.61e-07,8;UBERON:0000083,1.61e-07,8;UBERON:0009201,1.61e-07,8;UBERON:0006553,1.61e-07,8;UBERON:0003074,1.61e-07,8;UBERON:0003060,1.61e-07,8;UBERON:0001851,6.20e-07,15;UBERON:0000353,6.20e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,1.22866968250754,5.58240934377942,0,0.263766978228454,0.123766352960047,0,0,0,0,0,0.123121058076788,0.204000691244253,0,0.286235987131057,0.136874425072884,1.12988375635323,0,0,0,0,0,0,1.83884244895785,0.30120591877825,0.369754010166788,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,0,0,0,0.224723484445085,0,0,0,0.329851300186716,0,0,0,0,0,0,0,0,0,0,0.316462387440884,0,0,0,0.112328631146495,0.150176892841506,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.790152254325231,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.289803085735052,0,0,0,0.226618685395132,0,0.34362744548263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0.289693037921647,0,0.973269740605272,0,0,0,0.327447688744282,0.728590576585084,0.741568885568859,0,0,0,0,0.571994910780128,0,0.198762407366705,0.860234595106124,0.347140501607594,0,0,0,0.208994966536811,0,0,0.66944122552934,0,3.04108842287405,1.70843440283719,0,0,0,0,0.112611480483322,0,0,0,0,0,3.48875241714027,0,0,0,0,0,0,0,0,0,0.134710672069688,0,0,0,0.70296429550139,0,0,0,0.587172493218824,0.809364721840658,0.421352420106746,0,0.737005903870608,0,0,0,0,1.43723628363248,0.673344455816265,0.250237039743928,0,0,0,0,0.226864366320042,0,0.213557388818567,0.635795703478686,0.900273288253207,2.37020817248409,0.257640540045629,0.37223371266318,0,0,0.252433774244115,0.184099797284599,0,0,0,0,0.386521706326594,0,0.573609190778008,2.5614478287215,1.32529768321485,2.5562667431294,3.21349270547648,2.01856680700503,0,1.56449532329816,0,1.38134921352481,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.329250856225877,1.1240175325762,0.603173834469785,0.277765335475589,0,0,0,0.115930404975077,0,1.29929802984966,0,2.28304982681518,0,0,0,0,0,0.93733833986777,0.16798212819886,0.850650583454319,0,0,0,0,0,0,0,0,4.69884417762051,3.05590740446622,2.34434894420094,5.13217338068116,0.822619941626588,0,0,0.224262168690721,0,0.1466765716419,0,0,0,0,0,3.85811061393213,1.41849132023278,2.93064396917709,0.142977993658148,0,0,0,0,0,0,0,1.09970290300263,0,0,0,0,0,0,0,0.205476322550383,0,0,0,0,0,0.508189248444927,0,0,0.335032530668698,0,0,0,0.828831026872071,0.12269149171914,0.500170521059677,0,0,0,0,0,0,0,0,1.32845119707087,0.368738337083406,0,0.195801157462741,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,1.48418066444991,0.154209693802656,0,0,0,0.116210378459959,0,0.601519410909855,3.49907757956406,0.114814448164607,0,0,0,1.30926073077505,4.70609861506113,4.38417673959782,0.211103257785751,2.27466768141793,1.36074964221213,0.863663664408557,3.08454505380579,0.541892875087706,1.50506932156456,0,0.831076008928724,2.0148727924996,0,0,0,0,0,0,0,0,1.72279661398852,0.650060246036521,0,0.096670718292122,0.154048617114644,0,0.689182862422653,0.322260734604821,0.580066775656914,0.426133137080504,0.267096106940212,0.661139661443912,2.30628080838127,0.893288987462089,2.023155617111,0,0,0,0,0,0,0,0.143124886741991,0.372158369359667,0,0,0.767693373934002,0,0,0,0.719489830333259,0.274537029736055,0.353437207037059,0,0,0,0.48763373908959,0,0,0,0,0,0,1.32687795048244,1.31535265576129,0.578775534266688,0.655894752046633,0,0,0,0,0,0,0,1.05553817648832,0.329294892959902,0,0.349934720244983,1.25088746543166,0.670302275535787,2.17781969722645,0.282431402330337,1.29151611801369,0,0.886860307073351,0.689170200620878,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0.23874448473769,0,0.614321404198464,0,0,0,0,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0.295930216910801,0,0,0,0.0927680981618513,0,0,0,0,0,0,0,8.27384095779515,0,0,0,0.241192877250816,0,0.110579259931225,0,0,0,0,0.0769502585037971,0,9.2225561755224,5.38545866458633,0.651884231532048,0,0.366390373607449,0.533034776018635,0,0,0,0,0,0,0,0,0,2.93819054686466,0,2.81305231664718,0,0.0884575645033392,0.611030144933625,0,0,0,0.134802265961354,0,0,0,0.782658475728359,0,0,1.20990716048664,0.30607276163049,0,0,0,0,0,0,0,4.55375273647668,0,0,3.91969589657511,0,0.17472666824203,0,0,0,0,0.0969890164884194,0,0,0,0,0.253243183823515,0,0,0,0,0.288180834308212,0,0,0,0,1.88555227693436,0,0,0,0,0,0,0,0,0,0.558564802544508,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,1.59045937961861,0,0.964518890790115,0.412618309791701,0,0,0,0,3.35434687599266,0.157611414598396,0.104909176269996,0,0,3.64638874906946,0,0,0,0,0,0,0,0,0,0,0,0,1.0342636508924,0.39669780522807,3.07956308191793,0,0.106787412567695,0,0.414239055347196,0.496166021811951,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0.573409195690071,0.110929051536852,0.18628920882415,0,0,0,0,0,0,4.20270982971393,0,0,0,0,0,0,0,0,0,0,0,0,0.155262956876259,0,0,0.521745061811734,0.300515217994437,0,0,0,0,0,0,9.60066635191569,0,0,0,0,0,8.35181734288677,0,0,3.67105056759701,0,0,0,4.94729608648467,0,0,0,4.49059444250558,0,0,0,0.132864840313363,0.163565394255844,0,0,0,0,0,0,0,0,0.699397538597222,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0642292250964595,0,0,0,0.252071696221718,0,0,0,5.20182908055436,5.5445769973438,0,0,0,0,0,0.0752103283492573,0,0,2.8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| ||
|short_description=p4@SDCCAG8 | |short_description=p4@SDCCAG8 | ||
}} | }} |
Latest revision as of 19:52, 16 September 2015
Short description: | p4@SDCCAG8 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SDCCAG8_5end |
Coexpression cluster: | C3957_Alveolar_testicular_merkel_oral_carcinoid_mesothelioma_choriocarcinoma |
Association with transcript: | -43bp_to_ENST00000497459_5end |
EntrezGene: | SDCCAG8 |
HGNC: | 10671 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.77e-19 | 253 |
germ line cell | 1.45e-13 | 7 |
germ cell | 1.45e-13 | 7 |
embryonic stem cell | 4.11e-12 | 5 |
epithelial cell of nephron | 8.86e-12 | 15 |
melanocyte | 9.27e-12 | 10 |
melanoblast | 9.27e-12 | 10 |
kidney cell | 3.54e-10 | 17 |
kidney epithelial cell | 3.54e-10 | 17 |
embryonic cell | 1.03e-09 | 250 |
kidney cortical cell | 6.16e-09 | 12 |
renal cortical epithelial cell | 6.16e-09 | 12 |
glomerular cell | 1.18e-08 | 7 |
kidney corpuscule cell | 1.18e-08 | 7 |
light melanocyte | 1.82e-08 | 3 |
glomerular endothelial cell | 2.83e-08 | 5 |
pigment cell | 4.64e-08 | 14 |
endo-epithelial cell | 6.26e-07 | 42 |
neurecto-epithelial cell | 8.20e-07 | 20 |
Ontology term | p-value | n |
---|---|---|
nephron epithelium | 8.86e-12 | 15 |
renal tubule | 8.86e-12 | 15 |
nephron tubule | 8.86e-12 | 15 |
nephron | 8.86e-12 | 15 |
uriniferous tubule | 8.86e-12 | 15 |
nephrogenic mesenchyme | 8.86e-12 | 15 |
excretory tube | 6.30e-11 | 16 |
kidney epithelium | 6.30e-11 | 16 |
cortex of kidney | 6.16e-09 | 12 |
renal parenchyma | 6.16e-09 | 12 |
primitive nephron | 1.18e-08 | 7 |
renal glomerulus | 1.18e-08 | 7 |
renal corpuscle | 1.18e-08 | 7 |
glomerular capsule | 1.18e-08 | 7 |
metanephric mesenchyme | 1.18e-08 | 7 |
glomerular tuft | 1.18e-08 | 7 |
S-shaped body | 1.18e-08 | 7 |
renal vesicle | 1.18e-08 | 7 |
comma-shaped body | 1.18e-08 | 7 |
testis | 7.78e-08 | 8 |
mesonephric epithelium | 1.61e-07 | 8 |
mesonephric tubule | 1.61e-07 | 8 |
nephric duct | 1.61e-07 | 8 |
renal duct | 1.61e-07 | 8 |
mesonephric duct | 1.61e-07 | 8 |
pronephric duct | 1.61e-07 | 8 |
cortex | 6.20e-07 | 15 |
parenchyma | 6.20e-07 | 15 |