FFCP PHASE1:Hg19::chr1:245133428..245133449,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=84288 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28166 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=-138bp_to_ENST00000497591_5end | |||
|cluster_id=chr1:245133428..245133449,+ | |||
|description=CAGE_peak_5_at_EFCAB2_5end | |||
|id=chr1:245133428..245133449,+ | |||
|ontology_enrichment_celltype=CL:0002057!7.46e-11!42;CL:0000860!1.94e-10!45;CL:0002194!9.50e-09!63;CL:0000576!9.50e-09!63;CL:0000040!9.50e-09!63;CL:0000559!9.50e-09!63;CL:0000557!3.76e-08!71;CL:0000839!5.17e-08!70;CL:0000766!7.17e-08!76;CL:0002009!7.61e-08!65;CL:0000136!2.61e-07!15 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.13e-09;33!CL:0002057;2.13e-09;33!CL:0000576;3.16e-08;48!CL:0000136;3.68e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.55e-12,42;CL:0002057,6.55e-12,42;CL:0000473,2.33e-10,48;CL:0000234,2.33e-10,48;CL:0000766,1.18e-09,72;CL:0002194,1.71e-09,59;CL:0000576,1.71e-09,59;CL:0000040,1.71e-09,59;CL:0000559,1.71e-09,59;CL:0000557,2.51e-09,67;CL:0000839,8.53e-09,66;CL:0002009,1.00e-08,61;CL:0000136,4.19e-08,15;CL:0000763,7.35e-07,108;CL:0000049,7.35e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;6.92e-09;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.02e-17!115;UBERON:0000062!1.07e-14!511;UBERON:0000467!2.89e-11!625;UBERON:0000468!3.49e-11!659;UBERON:0000480!5.49e-11!626;UBERON:0001049!7.52e-11!57;UBERON:0005068!7.52e-11!57;UBERON:0006241!7.52e-11!57;UBERON:0007135!7.52e-11!57;UBERON:0003080!4.38e-08!42;UBERON:0002616!6.15e-08!59;UBERON:0002780!8.49e-08!41;UBERON:0001890!8.49e-08!41;UBERON:0006240!8.49e-08!41;UBERON:0000923!1.77e-07!604;UBERON:0005291!1.77e-07!604;UBERON:0006598!1.77e-07!604;UBERON:0002532!1.77e-07!604;UBERON:0002050!2.12e-07!605;UBERON:0005423!2.12e-07!605;UBERON:0002371!3.72e-07!80;UBERON:0000922!6.19e-07!612;UBERON:0000955!9.19e-07!69;UBERON:0006238!9.19e-07!69;UBERON:0001474!9.33e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0000073;2.53e-07;53!UBERON:0002616;2.53e-07;53 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,2.45e-18,114;UBERON:0001049,9.20e-12,56;UBERON:0005068,9.20e-12,56;UBERON:0006241,9.20e-12,56;UBERON:0007135,9.20e-12,56;UBERON:0000073,2.15e-11,53;UBERON:0002616,2.15e-11,53;UBERON:0002780,1.01e-08,41;UBERON:0001890,1.01e-08,41;UBERON:0003080,1.01e-08,41;UBERON:0006240,1.01e-08,41;UBERON:0002371,1.61e-08,76;UBERON:0000923,8.17e-08,560;UBERON:0010316,8.17e-08,560;UBERON:0005291,8.17e-08,560;UBERON:0006598,8.17e-08,560;UBERON:0010317,8.17e-08,560;UBERON:0002532,8.17e-08,560;UBERON:0001474,2.37e-07,82;UBERON:0002050,2.47e-07,564;UBERON:0000955,2.75e-07,68;UBERON:0006238,2.75e-07,68;UBERON:0003528,5.11e-07,34;UBERON:0002020,5.11e-07,34;UBERON:0003075,5.96e-07,82;UBERON:0007284,5.96e-07,82;UBERON:0000125,6.49e-07,9;UBERON:0002308,6.49e-07,9;UBERON:0001893,9.32e-07,34 | |||
|phase1_expression=3.27021082687002,2.78330681058278,4.65149533516705,5.00366491765652,2.68176656656373,0.872338524100369,2.53299878168311,1.26343974685366,1.82829939739887,0.491467873003018,0,0.655324116390517,0,0.74259811776028,0.331397375727916,1.34465029290355,1.20538905604795,0,0,0.61560529038394,0.408001382488506,0,0.85870796139317,0.273748850145768,0.251085279189606,0.0764134057479513,0.164201178899891,0,7.08055698328027,3.0706351847777,3.09632246632152,0.919421224478927,0.6024118375565,1.10926203050036,0.309868802321207,0.142169232487422,2.34880351467878,4.43196326825502,1.60435557976113,6.51032612147556,0.447830948479849,0.32389366601898,1.03030227053675,2.4717700592526,2.26725566213286,2.66842467306598,3.48643555358527,2.46700732813095,2.16794459626573,1.1507695692886,2.56160706529101,2.60130452877444,2.41321976515633,0.645484683583826,0,3.9530891303947,0.818718450173537,1.12361742222542,3.97909060082173,4.17207735198922,1.27867425159808,1.9791078011203,2.39356389145958,2.55734850319616,2.32167390902867,1.70215567407342,5.60540024096017,2.51248665256743,1.5644487552606,0.868755378820466,3.02699751316684,1.84138817993782,2.53169909952708,1.05627643155971,1.4882300997553,1.04829322754188,1.23561494261145,2.25265339262259,3.53596290733576,1.42506371870624,0.79566670879636,2.19196984517561,0,0.546138611262131,0,0,0,0,0,0,0,0,0,1.32171328579026,2.24203425192614,3.95076127162616,0.983548850569165,1.17903228824749,0.411202997999018,0,0,0.946895611469467,0,0.111410456885174,0.589211814949674,0,0,0,0,0,0.829050053357545,0,0.296573126324121,0.267540828089713,1.04535523804977,0.113309342697566,0,0.34362744548263,0.506039384039006,0,0,0,0.150575119077773,0,0,0,0,0.201606743224732,0.802320587350522,0.144824403882799,2.43806866313962,2.01210257911091,0.255725123687061,0.722878304769133,0,1.88300474649071,0.795285947051099,0.973269740605272,0.378139268656271,0.443458794925128,0.087834785693126,0.851363990735132,0,0,0,0.174129737299267,0.531831842075461,0,0.571994910780128,0,0.198762407366705,0,0.347140501607594,0.56530794192401,0,0.275118041940067,0,0,0.35576626268671,0.66944122552934,0,0,0.488124115096339,0.367663080345869,0,0.446498641420399,0.44905874525234,0.225222960966644,1.53316637465883,0,0,0,0,0,1.98788780678127,0.506522046658319,1.19168262731897,1.14734648299525,0,1.12135520028461,1.06748995729705,0.49333509683432,1.24484414159907,0.269421344139376,0.326923806226917,0.454072282934794,0,0.468642863667593,0.624320153660641,0.570471821544449,0.747243402759005,0.469737994575059,0.971237666208789,0.702254033511242,1.02077085627447,0.245668634623536,1.34323515528495,3.56400857184616,3.21447008062124,0.910161361938026,1.43723628363248,0.336672227908132,0.625592599359821,0.554128230968366,1.75591048352335,1.5324389789951,4.20666564938471,0.794025282120147,0.538168907066586,4.48470516518992,1.27159140695737,0.300091096084402,1.13357782162283,0.257640540045629,1.11670113798954,1.18143432568886,1.16924406193438,1.00973509697646,2.20919756741518,0.969876340912871,0.710019185033229,1.30977727695932,0.847802961552438,0.193260853163297,0.272746120590835,0.286804595389004,0.365921118388786,0.397589304964456,0.348581828608555,0.414644220061482,0.252320850875628,0,0,1.28648187638577,1.38134921352481,3.25057549622385,1.44375896333917,1.41968160047813,1.68584690078102,2.6511213287183,1.65440959098591,0.871517776369625,1.89816495288877,1.34831308160164,1.37355025587742,2.69323009862473,0,0,1.2347220339942,0,3.80265104465493,0.982827216677626,2.36315962672562,0,2.09080345523293,0.171567810298526,0.109750285408626,1.1240175325762,0,0,0.651616610620649,0,0,0,0.939269553886573,0.721832238805369,1.38895653772983,0.951270761172991,0,0.858486162094873,0.984868024349589,0.702012795417713,1.78357394746474,0,0.335964256397719,0.141775097242386,0.626909658919938,0,0,0,0.352193736052904,1.65862492432618,2.59415916150531,1.51490920111656,0.253991577168676,0.381988425558278,0,0,0.411309970813294,0,0,0.224262168690721,0,0.36669142910475,1.16344544182,0,0.845302752556,1.59562869950922,2.08014873822732,0,0,1.0656887160644,1.42977993658148,0,1.64648067356154,1.62868092146868,0.710783897485092,1.58390374586686,0.602878754119172,2.61460037580088,0.299918973546171,0,0.502257091432126,2.10833939483032,1.19812427745791,0,1.42636905040718,1.73737568001095,0.61642896765115,0.895304816199478,0.112085143993527,0.394061520403854,0.215627574859517,1.02674429023799,0.508189248444927,1.30139853857622,0,0.670065061337395,0,0,0,1.65766205374414,0.613457458595699,0.500170521059677,0.271265023699736,0.415941723061614,0.178428988797162,0.473107245101804,0,0.300946099727719,0,3.10419213877515,0,1.10621501125022,1.12948698808508,0.391602314925481,0.343143423810856,0.82707210449155,0.862856803274467,0.640365346820666,1.81876542867756,1.66435439510497,0.30239029332968,1.98486246255021,2.14846762603287,3.64858122762996,2.30650468660262,3.07024349440022,1.93024705372329,0,0.771048469013278,0.710246901252508,0.98552587216571,1.03850885836724,0.581051892299796,0.846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| |||
|short_description=p5@EFCAB2 | |||
}} |
Latest revision as of 21:31, 16 September 2015
Short description: | p5@EFCAB2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_EFCAB2_5end |
Coexpression cluster: | NA |
Association with transcript: | -138bp_to_ENST00000497591_5end |
EntrezGene: | EFCAB2 |
HGNC: | 28166 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.55e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.55e-12 | 42 |
defensive cell | 2.33e-10 | 48 |
phagocyte | 2.33e-10 | 48 |
myeloid leukocyte | 1.18e-09 | 72 |
monopoietic cell | 1.71e-09 | 59 |
monocyte | 1.71e-09 | 59 |
monoblast | 1.71e-09 | 59 |
promonocyte | 1.71e-09 | 59 |
granulocyte monocyte progenitor cell | 2.51e-09 | 67 |
myeloid lineage restricted progenitor cell | 8.53e-09 | 66 |
macrophage dendritic cell progenitor | 1.00e-08 | 61 |
fat cell | 4.19e-08 | 15 |
myeloid cell | 7.35e-07 | 108 |
common myeloid progenitor | 7.35e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 2.45e-18 | 114 |
neural tube | 9.20e-12 | 56 |
neural rod | 9.20e-12 | 56 |
future spinal cord | 9.20e-12 | 56 |
neural keel | 9.20e-12 | 56 |
regional part of nervous system | 2.15e-11 | 53 |
regional part of brain | 2.15e-11 | 53 |
regional part of forebrain | 1.01e-08 | 41 |
forebrain | 1.01e-08 | 41 |
anterior neural tube | 1.01e-08 | 41 |
future forebrain | 1.01e-08 | 41 |
bone marrow | 1.61e-08 | 76 |
germ layer | 8.17e-08 | 560 |
germ layer / neural crest | 8.17e-08 | 560 |
embryonic tissue | 8.17e-08 | 560 |
presumptive structure | 8.17e-08 | 560 |
germ layer / neural crest derived structure | 8.17e-08 | 560 |
epiblast (generic) | 8.17e-08 | 560 |
bone element | 2.37e-07 | 82 |
embryonic structure | 2.47e-07 | 564 |
brain | 2.75e-07 | 68 |
future brain | 2.75e-07 | 68 |
brain grey matter | 5.11e-07 | 34 |
gray matter | 5.11e-07 | 34 |
neural plate | 5.96e-07 | 82 |
presumptive neural plate | 5.96e-07 | 82 |
neural nucleus | 6.49e-07 | 9 |
nucleus of brain | 6.49e-07 | 9 |
telencephalon | 9.32e-07 | 34 |