FFCP PHASE1:Hg19::chr1:154474878..154474925,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:154474878..154474925,- to FFCP PHASE1:Hg19::chr1:154474878..154474925,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=126669 | |EntrezGene=126669 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=27004 | |HGNC=27004 | ||
|TSSclassifier=strong | |||
|UniProt=Q5VZ18 | |UniProt=Q5VZ18 | ||
|association_with_transcript=-289bp_to_ENST00000304760,uc001ffb.2,uc001ffc.2_5end | |||
|cluster_id=chr1:154474878..154474925,- | |||
|coexpression_cluster_id=C140 | |||
|description=CAGE_peak_1_at_SHE_5end | |||
|id=chr1:154474878..154474925,- | |||
|ontology_enrichment_celltype=CL:0000115!2.75e-31!35;CL:0002139!1.15e-27!24;CL:0002078!9.91e-25!44;CL:0000071!2.23e-21!18;CL:0002546!2.23e-21!18;CL:0000213!4.84e-15!57;CL:0000215!4.84e-15!57;CL:1000413!1.53e-11!9;CL:0002543!3.09e-08!6;CL:0002544!3.13e-08!6;CL:0005020!7.86e-08!6;CL:0002138!7.86e-08!6;CL:0005022!7.86e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000115;6.42e-36;36!CL:0002139;1.97e-35;24!CL:0000071;2.72e-27;18!CL:0002078;2.83e-20;45!CL:1000413;1.69e-14;9!CL:0000213;4.10e-13;58!CL:0000215;4.10e-13;58!CL:0002543;3.21e-10;6!CL:0002544;3.34e-10;6!CL:0002138;1.17e-09;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0000115,3.38e-42,36;CL:0002139,1.92e-35,24;CL:0002078,3.43e-31,45;CL:0000071,2.86e-27,18;CL:0002546,2.86e-27,18;CL:0000213,1.86e-21,58;CL:0000215,1.86e-21,58;CL:1000413,1.69e-14,9;CL:0002543,3.23e-10,6;CL:0002544,3.28e-10,6;CL:0005020,1.08e-09,6;CL:0002138,1.08e-09,6;CL:0005022,1.08e-09,6 | |||
|ontology_enrichment_development_v019=CL:0002546;2.72e-27;18!CL:0005022;1.17e-09;6!UBERON:0004872;2.50e-07;7 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!8.12e-54!115;UBERON:0004111!6.68e-22!241;UBERON:0001986!2.23e-21!18;UBERON:0004638!2.23e-21!18;UBERON:0004852!2.23e-21!18;UBERON:0000025!7.93e-19!194;UBERON:0000477!9.05e-19!286;UBERON:0001049!9.80e-19!57;UBERON:0005068!9.80e-19!57;UBERON:0006241!9.80e-19!57;UBERON:0007135!9.80e-19!57;UBERON:0000487!4.23e-16!22;UBERON:0006914!1.23e-14!25;UBERON:0002616!1.39e-14!59;UBERON:0003080!3.74e-14!42;UBERON:0001017!9.39e-14!82;UBERON:0003075!1.64e-13!86;UBERON:0007284!1.64e-13!86;UBERON:0002780!2.38e-13!41;UBERON:0001890!2.38e-13!41;UBERON:0006240!2.38e-13!41;UBERON:0005743!2.69e-13!86;UBERON:0000955!1.26e-12!69;UBERON:0006238!1.26e-12!69;UBERON:0002346!2.89e-12!90;UBERON:0002020!4.11e-12!34;UBERON:0003528!4.11e-12!34;UBERON:0000468!4.37e-12!659;UBERON:0001893!4.76e-12!34;UBERON:0002791!1.43e-11!33;UBERON:0003915!1.53e-11!9;UBERON:0004700!1.53e-11!9;UBERON:0001917!1.53e-11!9;UBERON:0000073!2.27e-11!94;UBERON:0001016!2.27e-11!94;UBERON:0002619!2.79e-11!22;UBERON:0001869!7.42e-11!32;UBERON:0000467!2.20e-10!625;UBERON:0000480!2.76e-10!626;UBERON:0000483!3.33e-10!309;UBERON:0001950!4.97e-10!20;UBERON:0000119!7.72e-10!312;UBERON:0000055!2.07e-09!69;UBERON:0000956!2.71e-09!25;UBERON:0000203!2.71e-09!25;UBERON:0002465!2.32e-08!10;UBERON:0003056!3.22e-08!61;UBERON:0000922!3.43e-08!612;UBERON:0001009!2.14e-07!113;UBERON:0004872!2.78e-07!84;UBERON:0002049!6.06e-07!79;UBERON:0007798!6.06e-07!79;UBERON:0001473!6.60e-07!8;UBERON:0004536!6.60e-07!8;UBERON:0006558!6.60e-07!8;UBERON:0002050!7.85e-07!605;UBERON:0005423!7.85e-07!605;UBERON:0000153!8.80e-07!129;UBERON:0007811!8.80e-07!129;UBERON:0002298!9.31e-07!8 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;2.72e-27;18!UBERON:0001986;2.72e-27;18!UBERON:0004852;2.72e-27;18!UBERON:0000487;4.25e-21;22!UBERON:0006914;8.91e-18;25!UBERON:0003915;1.69e-14;9!UBERON:0004700;1.69e-14;9!UBERON:0001917;1.69e-14;9!UBERON:0007023;8.10e-13;114!UBERON:0000490;4.20e-11;33!UBERON:0002465;1.10e-08;10!UBERON:0002619;1.33e-08;22!UBERON:0001893;2.21e-08;34!UBERON:0001638;2.27e-08;9!UBERON:0003920;2.27e-08;9!UBERON:0004582;2.27e-08;9!UBERON:0003528;3.78e-08;34!UBERON:0002020;3.78e-08;34!UBERON:0002780;7.53e-08;41!UBERON:0001890;7.53e-08;41!UBERON:0000055;1.42e-07;65!UBERON:0002791;1.46e-07;32!UBERON:0001869;1.62e-07;32!UBERON:0001950;3.38e-07;20!UBERON:0000956;3.44e-07;25!UBERON:0000203;3.44e-07;25!UBERON:0000073;5.55e-07;53!UBERON:0002616;5.55e-07;53!UBERON:0001473;6.19e-07;8!UBERON:0004536;6.19e-07;8!UBERON:0006558;6.19e-07;8 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,6.85e-51,114;UBERON:0004638,2.86e-27,18;UBERON:0001986,2.86e-27,18;UBERON:0004852,2.86e-27,18;UBERON:0004111,1.53e-21,240;UBERON:0000487,4.43e-21,22;UBERON:0000025,1.14e-18,192;UBERON:0006914,9.23e-18,25;UBERON:0003915,1.69e-14,9;UBERON:0004700,1.69e-14,9;UBERON:0001917,1.69e-14,9;UBERON:0000055,5.06e-14,68;UBERON:0001049,4.82e-12,56;UBERON:0005068,4.82e-12,56;UBERON:0006241,4.82e-12,56;UBERON:0007135,4.82e-12,56;UBERON:0000073,3.80e-11,53;UBERON:0002616,3.80e-11,53;UBERON:0002049,6.00e-11,78;UBERON:0007798,6.00e-11,78;UBERON:0004872,6.61e-11,83;UBERON:0000483,2.78e-10,306;UBERON:0007500,3.61e-10,59;UBERON:0001981,3.61e-10,59;UBERON:0004537,3.61e-10,59;UBERON:0006965,3.61e-10,59;UBERON:0000119,5.64e-10,309;UBERON:0002780,1.01e-09,41;UBERON:0001890,1.01e-09,41;UBERON:0003080,1.01e-09,41;UBERON:0006240,1.01e-09,41;UBERON:0001009,1.04e-09,112;UBERON:0003528,1.12e-09,34;UBERON:0002020,1.12e-09,34;UBERON:0001893,1.30e-09,34;UBERON:0003075,2.58e-09,82;UBERON:0007284,2.58e-09,82;UBERON:0002465,8.21e-09,10;UBERON:0003914,1.50e-08,117;UBERON:0002346,1.79e-08,86;UBERON:0002791,1.94e-08,32;UBERON:0002619,1.97e-08,22;UBERON:0001638,2.14e-08,9;UBERON:0003920,2.14e-08,9;UBERON:0004582,2.14e-08,9;UBERON:0001869,2.69e-08,32;UBERON:0004535,3.73e-08,109;UBERON:0002050,8.90e-08,564;UBERON:0000923,1.27e-07,560;UBERON:0010316,1.27e-07,560;UBERON:0005291,1.27e-07,560;UBERON:0006598,1.27e-07,560;UBERON:0010317,1.27e-07,560;UBERON:0002532,1.27e-07,560;UBERON:0005423,1.89e-07,581;UBERON:0010314,2.15e-07,132;UBERON:0010371,2.46e-07,104;UBERON:0000922,3.73e-07,592;UBERON:0003887,3.75e-07,12;UBERON:0001017,3.98e-07,81;UBERON:0000956,4.80e-07,25;UBERON:0000203,4.80e-07,25;UBERON:0001950,4.86e-07,20;UBERON:0001473,5.87e-07,8;UBERON:0004536,5.87e-07,8;UBERON:0006558,5.87e-07,8;UBERON:0000955,6.22e-07,68;UBERON:0006238,6.22e-07,68 | |||
|phase1_expression=0,0,0.140954404095971,0,0,0,0,0,0.261185628199839,0,0,0,0,0,0,0,0,0,0,0.123121058076788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.95661896959697,1.29557466407592,6.69696475848885,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0.320929027076094,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.661044872784862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.383587685530591,0,0,0,0,0,0,0,0,5.50112117090393,0,0,0,0,0,0,0,0,22.8576768471711,8.60234595106124,29.1598021350379,37.8756321089086,23.4919684277547,26.6864500681865,23.198441285586,20.6733407335463,9.96145535522789,14.3929863488808,16.1131726843659,9.12326526862215,36.1211845171291,29.4130464276695,23.494116488571,20.4496377770543,15.7170560838319,21.0583468503813,30.6633274931766,28.4779697870439,25.0986389184658,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,1.61652806483626,1.30769522490767,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0.718618141816238,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.487894824518382,0.397589304964456,0.232387885739037,0.10366105501537,0,0.36497735907583,0,0,0,0,0,0,0,0,0,0,0,0,0,0,42.074860913605,9.81692416624121,0.4115740113314,0,0,0,6.49868897349544,0,0,0,0,0,0,0,0,0,0,0.115930404975077,0,9.96128489551409,9.72269576410883,11.0347408296067,0,0,0,0,0,0,0,0,0,0,0,0,0,3.10992173311158,4.32359860250884,5.6809095041871,0,0,0,3.4214489204541,0,0,0,0,0,0,0,0,1.690605505112,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0.561320188866147,0.256278298511402,0,0.160853921143607,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,31.8453475398511,26.1944306125834,8.2048048118813,15.4227252690289,0,0,0,0.831076008928724,0,0.219259876645935,0,0,0,0,4.94596855909067,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.655894752046633,0,0,0,0,0,0,0,0,0.987884678879706,0,0,0,0,0,4.61304623806218,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.39284931435788,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.500547425135725,0,0,0,0,0,0,0,14.2112933893737,0,0,0,0,0,0,0.994147647766298,2.81338832821025,0,0,0,6.5751836122853,3.03912307084262,0,0,0,0,0,0,0,3.74844941420348,0,0,0.969332746095218,0.927680981618513,0,0,0,9.42499448065232,0,0,0,4.13692047889758,0,0.173624994933292,0,2.05013945663194,0,1.54810963903714,0.591095237907095,1.75508317723178,0,0,5.1556673197544,0,0,0,0,0.638002319463839,0,2.13213910407454,0,0,0,0,0,0,0,0,0,0,0,0,1.99052386215701,4.59979335417364,2.4441205797345,0.296521128680622,0,0.208843899010911,1.95463285643963,12.0386647094818,1.40558667435203,0,0,0,3.55125962564451,2.41981432097328,0.30607276163049,8.15106877207495,0,0,0,0,0,0,0,0,0,0,0,5.76598005198699,0,0,0,0,3.9765496760252,0,0.90392296312213,0,0,1.39283751102933,0.195551382734803,0,2.98834192635094,0.599428828746391,0,0,0,0,0,0,0,0,0,0,0,3.28572909340783,0,0,0,4.46851842035607,6.41649187232714,10.0502223440754,2.99518500748487,7.2968428183217,7.58782955302367,4.70284307407084,0,0,0,0,0,0,0,1.59045937961861,3.13267834056624,0.321506296930038,0.550157746388935,0,0.2249738915515,4.6428117273477,1.39723980313457,0,2.28536551167675,4.09145787452985,0,0,0,5.71756261098694,8.60719561475061,0,0,0,0,0,0.164185041498678,0.170388021785422,0,1.17241786942466,2.65013777824443,1.29282956361551,2.51241943311111,0,0,4.69864615297857,7.8602152549833,13.6698888264575,4.96166021811951,0,0,0,3.26410682021684,1.7548292581589,0.306345576763462,1.63936315354902,0,0.886068179966986,1.09823638411767,2.50381861413,0.573409195690071,2.66229723688445,2.48385611765534,0.691743174681154,0,0,0.285465333544967,0,26.6950896309923,4.20270982971393,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.90342715918635,0.194860308839388,1.32864840313363,0.654261577023377,0.327609848846413,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.73418907760441,1.41696576325585,1.43670473151436,0.205116364240755,0.252071696221718,1.10651603942749,0.807378228159255,1.42769420259154,0,0,0,0,0,0,0,4.88867134270172,0,0,0,0,0,1.01306376927592,0,2.48024155801421,1.01465296310251,0,0,4.96211178389294,0,0,0,1.68141861109412,0.606965604236632,0.91064876540519,6.29786828154736,0,0,1.56330385846713,1.05236437700559,0,0,5.88698196378855,0.942693539496011,0,0.913158720509496,0,0,3.28792103212619,0,0,0,0,0.414432328326074,0,0,0.860454717640555,0,0,2.11693525095465,0,0.31020638566432,0,0,0,0,1.94228651156368,4.72248911538736,0,1.94284397223656,0,0,1.78380136166353,0,0,0,2.31522474323834,4.5897507705831,0,5.14811475683202,0,0.588925401344836,2.0793248022896,2.5359343655004,0,8.55253653616668,11.5379619472703,0,0,0,0,2.19100916473955,1.83491713361816,2.72345207987757,0,1.49581278420012,0,6.87734892670021,0,0.924351257262837,0,0,0,0,0.203977659483963,1.06886962106224,0,2.25636785363138,7.1231976325145,5.35928260312357,0,1.03432995861895,3.62497769231668,4.52322419781107,1.0334225573761,1.67601728598816,0,7.82860046821428,7.4783359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| ||
|short_description=p1@SHE | |||
}} | }} |
Latest revision as of 09:31, 17 September 2015
Short description: | p1@SHE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SHE_5end |
Coexpression cluster: | C140_Renal_Endothelial_Hepatic_Lymphatic_heart_lung_spleen |
Association with transcript: | -289bp_to_ENST00000304760, uc001ffb.2, uc001ffc.2_5end |
EntrezGene: | SHE |
HGNC: | 27004 |
UniProt: | Q5VZ18 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endothelial cell | 3.38e-42 | 36 |
endothelial cell of vascular tree | 1.92e-35 | 24 |
meso-epithelial cell | 3.43e-31 | 45 |
blood vessel endothelial cell | 2.86e-27 | 18 |
embryonic blood vessel endothelial progenitor cell | 2.86e-27 | 18 |
lining cell | 1.86e-21 | 58 |
barrier cell | 1.86e-21 | 58 |
endothelial cell of artery | 1.69e-14 | 9 |
vein endothelial cell | 3.23e-10 | 6 |
aortic endothelial cell | 3.28e-10 | 6 |
lymphangioblast | 1.08e-09 | 6 |
endothelial cell of lymphatic vessel | 1.08e-09 | 6 |
vascular lymphangioblast | 1.08e-09 | 6 |