FFCP PHASE1:Hg19::chr10:17270808..17270866,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7431 | |EntrezGene=7431 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12692 | |HGNC=12692 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-1bp_to_ENST00000497849_5end | |association_with_transcript=-1bp_to_ENST00000497849_5end | ||
|cluster_id=chr10:17270808..17270866,+ | |||
|description=CAGE_peak_6_at_VIM_5end | |description=CAGE_peak_6_at_VIM_5end | ||
|id=chr10:17270808..17270866,+ | |id=chr10:17270808..17270866,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.88e-24!180;CL:0002371!1.14e-20!591;CL:0000144!8.25e-20!625;CL:0002057!4.04e-16!42;CL:0000048!2.50e-15!430;CL:0000860!2.43e-14!45;CL:0000034!4.66e-14!444;CL:0000723!5.03e-14!436;CL:0000057!2.71e-12!75;CL:0000012!3.72e-12!682;CL:0000548!5.79e-12!679;CL:0000004!5.79e-12!679;CL:0000255!5.79e-12!679;CL:0000219!2.70e-11!390;CL:0000557!7.11e-10!71;CL:0000766!1.10e-09!76;CL:0002320!1.13e-09!365;CL:0000134!1.37e-08!358;CL:0002009!2.36e-08!65;CL:0000839!3.36e-08!70;CL:0000133!4.56e-08!59;CL:0002194!5.82e-08!63;CL:0000576!5.82e-08!63;CL:0000040!5.82e-08!63;CL:0000559!5.82e-08!63;CL:0000003!1.30e-07!722;CL:0002620!1.64e-07!23;CL:0000222!2.00e-07!119;CL:0000183!5.82e-07!59 | |ontology_enrichment_celltype=CL:0000055!2.88e-24!180;CL:0002371!1.14e-20!591;CL:0000144!8.25e-20!625;CL:0002057!4.04e-16!42;CL:0000048!2.50e-15!430;CL:0000860!2.43e-14!45;CL:0000034!4.66e-14!444;CL:0000723!5.03e-14!436;CL:0000057!2.71e-12!75;CL:0000012!3.72e-12!682;CL:0000548!5.79e-12!679;CL:0000004!5.79e-12!679;CL:0000255!5.79e-12!679;CL:0000219!2.70e-11!390;CL:0000557!7.11e-10!71;CL:0000766!1.10e-09!76;CL:0002320!1.13e-09!365;CL:0000134!1.37e-08!358;CL:0002009!2.36e-08!65;CL:0000839!3.36e-08!70;CL:0000133!4.56e-08!59;CL:0002194!5.82e-08!63;CL:0000576!5.82e-08!63;CL:0000040!5.82e-08!63;CL:0000559!5.82e-08!63;CL:0000003!1.30e-07!722;CL:0002620!1.64e-07!23;CL:0000222!2.00e-07!119;CL:0000183!5.82e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:0000860;3.52e-17;33!CL:0002057;3.52e-17;33!CL:0000473;1.78e-11;39!CL:0000234;1.78e-11;39!CL:0000576;3.83e-08;48!CL:0002620;5.01e-08;23!CL:0000766;1.16e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000048,4.82e-17,427;CL:0000860,1.78e-16,42;CL:0002057,1.78e-16,42;CL:0000723,4.02e-16,433;CL:0000034,5.18e-16,441;CL:0000219,6.67e-15,386;CL:0000473,7.82e-14,48;CL:0000234,7.82e-14,48;CL:0002320,3.49e-13,361;CL:0000057,3.65e-13,76;CL:0000766,1.39e-12,72;CL:0000557,2.04e-12,67;CL:0000134,6.01e-12,354;CL:0002009,9.99e-11,61;CL:0000839,1.04e-10,66;CL:0002194,3.07e-10,59;CL:0000576,3.07e-10,59;CL:0000040,3.07e-10,59;CL:0000559,3.07e-10,59;CL:0002620,2.45e-08,23;CL:0000133,3.54e-08,59 | |||
|ontology_enrichment_development_v019=CL:0002057;2.30e-12;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!1.65e-15!167;UBERON:0003081!3.15e-13!216;UBERON:0004765!5.20e-11!101;UBERON:0001434!5.20e-11!101;UBERON:0002384!1.82e-10!375;UBERON:0001474!4.44e-10!86;UBERON:0002371!5.28e-10!80;UBERON:0002049!2.50e-09!79;UBERON:0007798!2.50e-09!79;UBERON:0001981!8.06e-09!60;UBERON:0007500!8.06e-09!60;UBERON:0004537!8.06e-09!60;UBERON:0006965!8.06e-09!60;UBERON:0001637!2.78e-08!42;UBERON:0003509!2.78e-08!42;UBERON:0004572!2.78e-08!42;UBERON:0000055!3.35e-08!69;UBERON:0000914!1.65e-07!83;UBERON:0002329!1.65e-07!83;UBERON:0003077!1.65e-07!83;UBERON:0003059!1.65e-07!83;UBERON:0007282!1.65e-07!83;UBERON:0009618!1.65e-07!83;UBERON:0007285!1.65e-07!83;UBERON:0004535!2.12e-07!110;UBERON:0004573!2.76e-07!33;UBERON:0004571!2.76e-07!33;UBERON:0004872!3.24e-07!84;UBERON:0001009!9.30e-07!113 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,2.04e-15,167;UBERON:0002384,3.06e-14,371;UBERON:0001434,4.28e-13,100;UBERON:0002371,3.08e-12,76;UBERON:0003081,5.09e-12,203;UBERON:0004765,5.70e-12,90;UBERON:0001474,1.16e-11,82;UBERON:0000926,2.64e-10,315;UBERON:0004120,2.64e-10,315;UBERON:0006603,2.64e-10,315;UBERON:0001637,1.67e-08,42;UBERON:0003509,1.67e-08,42;UBERON:0004572,1.67e-08,42;UBERON:0007500,1.13e-07,59;UBERON:0001981,1.13e-07,59;UBERON:0004537,1.13e-07,59;UBERON:0006965,1.13e-07,59;UBERON:0002405,1.18e-07,93;UBERON:0004573,2.12e-07,33;UBERON:0004571,2.12e-07,33;UBERON:0002097,4.90e-07,41;UBERON:0002199,5.78e-07,46;UBERON:0002416,5.78e-07,46;UBERON:0002049,5.88e-07,78;UBERON:0007798,5.88e-07,78;UBERON:0002390,7.27e-07,98;UBERON:0003061,7.27e-07,98 | |||
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| ||
|short_description=p6@VIM | |short_description=p6@VIM | ||
}} | }} |
Latest revision as of 10:23, 17 September 2015
Short description: | p6@VIM |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_VIM_5end |
Coexpression cluster: | NA |
Association with transcript: | -1bp_to_ENST00000497849_5end |
EntrezGene: | VIM |
HGNC: | 12692 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
multi fate stem cell | 4.82e-17 | 427 |
classical monocyte | 1.78e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.78e-16 | 42 |
somatic stem cell | 4.02e-16 | 433 |
stem cell | 5.18e-16 | 441 |
motile cell | 6.67e-15 | 386 |
defensive cell | 7.82e-14 | 48 |
phagocyte | 7.82e-14 | 48 |
connective tissue cell | 3.49e-13 | 361 |
fibroblast | 3.65e-13 | 76 |
myeloid leukocyte | 1.39e-12 | 72 |
granulocyte monocyte progenitor cell | 2.04e-12 | 67 |
mesenchymal cell | 6.01e-12 | 354 |
macrophage dendritic cell progenitor | 9.99e-11 | 61 |
myeloid lineage restricted progenitor cell | 1.04e-10 | 66 |
monopoietic cell | 3.07e-10 | 59 |
monocyte | 3.07e-10 | 59 |
monoblast | 3.07e-10 | 59 |
promonocyte | 3.07e-10 | 59 |
skin fibroblast | 2.45e-08 | 23 |
neurectodermal cell | 3.54e-08 | 59 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 2.04e-15 | 167 |
connective tissue | 3.06e-14 | 371 |
skeletal system | 4.28e-13 | 100 |
bone marrow | 3.08e-12 | 76 |
lateral plate mesoderm | 5.09e-12 | 203 |
skeletal element | 5.70e-12 | 90 |
bone element | 1.16e-11 | 82 |
mesoderm | 2.64e-10 | 315 |
mesoderm-derived structure | 2.64e-10 | 315 |
presumptive mesoderm | 2.64e-10 | 315 |
artery | 1.67e-08 | 42 |
arterial blood vessel | 1.67e-08 | 42 |
arterial system | 1.67e-08 | 42 |
epithelial tube open at both ends | 1.13e-07 | 59 |
blood vessel | 1.13e-07 | 59 |
blood vasculature | 1.13e-07 | 59 |
vascular cord | 1.13e-07 | 59 |
immune system | 1.18e-07 | 93 |
systemic artery | 2.12e-07 | 33 |
systemic arterial system | 2.12e-07 | 33 |
skin of body | 4.90e-07 | 41 |
integument | 5.78e-07 | 46 |
integumental system | 5.78e-07 | 46 |
vasculature | 5.88e-07 | 78 |
vascular system | 5.88e-07 | 78 |
hematopoietic system | 7.27e-07 | 98 |
blood island | 7.27e-07 | 98 |