FFCP PHASE1:Hg19::chr5:1887052..1887065,-: Difference between revisions
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=50805 | |EntrezGene=50805 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6129 | |HGNC=6129 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=266bp_to_ENST00000505790_5end | |||
|cluster_id=chr5:1887052..1887065,- | |||
|description=CAGE_peak_2_at_IRX4_5end | |||
|id=chr5:1887052..1887065,- | |||
|ontology_enrichment_celltype=CL:0000039!9.57e-11!7;CL:0000586!9.57e-11!7;CL:0002251!3.45e-10!21;CL:0000362!4.42e-10!8;CL:0002621!6.62e-10!3;CL:0002159!3.13e-08!13;CL:0002327!5.63e-08!4;CL:0000317!1.52e-07!2;CL:1000448!1.52e-07!2;CL:0002308!1.52e-07!2;CL:0002140!1.52e-07!2;CL:0002076!1.68e-07!43;CL:0000223!9.63e-07!59 | |||
|ontology_enrichment_celltype_v019=CL:0000362;5.86e-19;9!CL:0002327;5.57e-16;4!CL:0000317;1.24e-14;2!CL:1000448;1.24e-14;2!CL:0002308;1.24e-14;2!CL:0002140;1.24e-14;2!CL:0000312;4.73e-13;5!CL:0002159;4.01e-12;14!CL:0002251;1.42e-11;20!CL:0000240;5.84e-11;6!CL:0000311;5.84e-11;6!CL:0000079;5.84e-11;6!CL:0000237;5.84e-11;6!CL:0002621;9.38e-10;3!CL:0000039;2.98e-09;7!CL:0000586;2.98e-09;7!CL:0002252;2.35e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000362,5.75e-19,9;CL:0002327,4.32e-16,4;CL:0000317,1.04e-14,2;CL:1000448,1.04e-14,2;CL:0002308,1.04e-14,2;CL:0002140,1.04e-14,2;CL:0000312,5.13e-13,5;CL:0002159,3.96e-12,14;CL:0002251,1.45e-11,20;CL:0000240,6.25e-11,6;CL:0000311,6.25e-11,6;CL:0000079,6.25e-11,6;CL:0000237,6.25e-11,6;CL:0000036,6.25e-11,6;CL:0000357,6.25e-11,6;CL:0000114,6.25e-11,6;CL:0002621,8.97e-10,3;CL:0000039,3.25e-09,7;CL:0000586,3.25e-09,7;CL:0002252,2.35e-08,1;CL:0002076,5.93e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000357;5.84e-11;6!CL:0000114;5.84e-11;6!UBERON:0004140;4.10e-08;1!UBERON:0000358;6.19e-08;1!UBERON:0009143;9.94e-08;1!UBERON:0010226;9.94e-08;1 | |||
|ontology_enrichment_disease=DOID:1749!3.54e-07!14;DOID:114!3.83e-07!2 | |||
|ontology_enrichment_disease_v019=DOID:114;8.98e-14;2!DOID:3151;1.77e-08;1!DOID:3149;1.77e-08;1!DOID:1799;2.90e-08;1!DOID:10165;2.90e-08;1!DOID:1798;2.90e-08;1!DOID:178;9.94e-08;1!DOID:326;9.94e-08;1!DOID:3978;9.94e-08;1!DOID:3394;9.94e-08;1!DOID:5844;9.94e-08;1!DOID:1287;2.51e-07;4 | |||
|ontology_enrichment_disease_v019_2=DOID:114,7.87e-14,2;DOID:3151,1.77e-08,1;DOID:3149,1.77e-08,1;DOID:1799,2.52e-08,1;DOID:10165,2.52e-08,1;DOID:1798,2.52e-08,1;DOID:178,9.94e-08,1;DOID:326,9.94e-08,1;DOID:3978,9.94e-08,1;DOID:3394,9.94e-08,1;DOID:5844,9.94e-08,1;DOID:1287,2.36e-07,4 | |||
|ontology_enrichment_uberon=UBERON:0000166!4.08e-15!21;UBERON:0000161!1.74e-13!35;UBERON:0000165!1.01e-10!28;UBERON:0000930!1.01e-10!28;UBERON:0001949!6.62e-10!3;UBERON:0003102!6.64e-10!95;UBERON:0001911!5.63e-08!4;UBERON:0005333!5.63e-08!4;UBERON:0008425!5.63e-08!4;UBERON:0005311!5.63e-08!4;UBERON:0001003!8.24e-08!14;UBERON:0007376!8.24e-08!14;UBERON:0007383!8.24e-08!14;UBERON:0003343!9.28e-08!4;UBERON:0004785!9.28e-08!4;UBERON:0002419!1.52e-07!2;UBERON:0007771!1.52e-07!2;UBERON:0003297!1.52e-07!2;UBERON:0001821!1.52e-07!2;UBERON:0003487!1.52e-07!2;UBERON:0001820!1.52e-07!2;UBERON:0005089!1.52e-07!2;UBERON:0005088!1.52e-07!2 | |||
|ontology_enrichment_uberon_v019=UBERON:0001003;5.13e-16;15!UBERON:0007376;5.13e-16;15!UBERON:0001911;5.57e-16;4!UBERON:0003343;1.19e-15;4!UBERON:0004785;1.19e-15;4!UBERON:0002419;1.24e-14;2!UBERON:0007771;1.24e-14;2!UBERON:0003297;1.24e-14;2!UBERON:0001821;1.24e-14;2!UBERON:0003487;1.24e-14;2!UBERON:0001820;1.24e-14;2!UBERON:0010371;9.62e-13;31!UBERON:0003729;1.22e-12;13!UBERON:0000974;1.30e-10;6!UBERON:0001043;6.86e-10;3!UBERON:0001949;9.38e-10;3!UBERON:0000161;1.38e-08;19!UBERON:0000166;1.38e-08;19!UBERON:0007029;2.90e-08;1!UBERON:0000344;3.80e-08;20!UBERON:0000014;6.00e-08;4!UBERON:0002084;9.94e-08;1!UBERON:0002082;9.94e-08;1!UBERON:0002199;8.20e-07;46!UBERON:0002416;8.20e-07;46!UBERON:0002097;9.56e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001911,4.32e-16,4;UBERON:0005333,4.32e-16,4;UBERON:0008425,4.32e-16,4;UBERON:0005311,4.32e-16,4;UBERON:0001003,5.07e-16,15;UBERON:0007376,5.07e-16,15;UBERON:0007383,5.07e-16,15;UBERON:0003343,1.31e-15,4;UBERON:0004785,1.31e-15,4;UBERON:0002419,1.04e-14,2;UBERON:0007771,1.04e-14,2;UBERON:0003297,1.04e-14,2;UBERON:0001821,1.04e-14,2;UBERON:0003487,1.04e-14,2;UBERON:0001820,1.04e-14,2;UBERON:0005089,1.04e-14,2;UBERON:0005088,1.04e-14,2;UBERON:0003729,1.25e-12,13;UBERON:0001043,7.85e-10,3;UBERON:0009143,7.85e-10,3;UBERON:0001949,8.97e-10,3;UBERON:0003102,4.97e-09,99;UBERON:0000076,2.72e-08,8;UBERON:0007029,2.90e-08,1;UBERON:0000344,3.86e-08,20;UBERON:0000014,6.00e-08,4;UBERON:0002084,1.06e-07,1;UBERON:0002082,1.06e-07,1;UBERON:0010226,1.06e-07,1;UBERON:0002097,2.06e-07,41;UBERON:0000166,2.22e-07,22 | |||
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| ||
|short_description=p2@IRX4 | |||
}} | }} |
Latest revision as of 12:25, 17 September 2015
Short description: | p2@IRX4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_IRX4_5end |
Coexpression cluster: | NA |
Association with transcript: | 266bp_to_ENST00000505790_5end |
EntrezGene: | IRX4 |
HGNC: | 6129 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epidermal cell | 5.75e-19 | 9 |
mammary gland epithelial cell | 4.32e-16 | 4 |
sebum secreting cell | 1.04e-14 | 2 |
epithelial cell of sweat gland | 1.04e-14 | 2 |
epithelial cell of skin gland | 1.04e-14 | 2 |
acinar cell of sebaceous gland | 1.04e-14 | 2 |
keratinocyte | 5.13e-13 | 5 |
general ecto-epithelial cell | 3.96e-12 | 14 |
epithelial cell of alimentary canal | 1.45e-11 | 20 |
stratified squamous epithelial cell | 6.25e-11 | 6 |
keratin accumulating cell | 6.25e-11 | 6 |
stratified epithelial cell | 6.25e-11 | 6 |
keratinizing barrier epithelial cell | 6.25e-11 | 6 |
epithelial fate stem cell | 6.25e-11 | 6 |
stratified epithelial stem cell | 6.25e-11 | 6 |
surface ectodermal cell | 6.25e-11 | 6 |
gingival epithelial cell | 8.97e-10 | 3 |
germ line cell | 3.25e-09 | 7 |
germ cell | 3.25e-09 | 7 |
epithelial cell of esophagus | 2.35e-08 | 1 |
endo-epithelial cell | 5.93e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
mammary gland | 4.32e-16 | 4 |
mammary bud | 4.32e-16 | 4 |
mammary ridge | 4.32e-16 | 4 |
mammary placode | 4.32e-16 | 4 |
skin epidermis | 5.07e-16 | 15 |
outer epithelium | 5.07e-16 | 15 |
enveloping layer of ectoderm | 5.07e-16 | 15 |
mucosa of oral region | 1.31e-15 | 4 |
respiratory system mucosa | 1.31e-15 | 4 |
skin gland | 1.04e-14 | 2 |
epidermis gland | 1.04e-14 | 2 |
gland of integumental system | 1.04e-14 | 2 |
sebaceous gland | 1.04e-14 | 2 |
skin sebaceous gland | 1.04e-14 | 2 |
sweat gland | 1.04e-14 | 2 |
sweat gland placode | 1.04e-14 | 2 |
sebaceous gland placode | 1.04e-14 | 2 |
mouth mucosa | 1.25e-12 | 13 |
esophagus | 7.85e-10 | 3 |
esophageal region | 7.85e-10 | 3 |
gingival epithelium | 8.97e-10 | 3 |
surface structure | 4.97e-09 | 99 |
external ectoderm | 2.72e-08 | 8 |
surface | 2.90e-08 | 1 |
mucosa | 3.86e-08 | 20 |
zone of skin | 6.00e-08 | 4 |
heart left ventricle | 1.06e-07 | 1 |
cardiac ventricle | 1.06e-07 | 1 |
future cardiac ventricle | 1.06e-07 | 1 |
skin of body | 2.06e-07 | 41 |
oral opening | 2.22e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
heart disease | 7.87e-14 | 2 |
skin squamous cell carcinoma | 1.77e-08 | 1 |
keratoacanthoma | 1.77e-08 | 1 |
islet cell tumor | 2.52e-08 | 1 |
endocrine pancreas cancer | 2.52e-08 | 1 |
pancreatic endocrine carcinoma | 2.52e-08 | 1 |
vascular disease | 9.94e-08 | 1 |
ischemia | 9.94e-08 | 1 |
extrinsic cardiomyopathy | 9.94e-08 | 1 |
myocardial ischemia | 9.94e-08 | 1 |
myocardial infarction | 9.94e-08 | 1 |
cardiovascular system disease | 2.36e-07 | 4 |