FFCP PHASE2:Hg19::chr15:41136369..41136420,+: Difference between revisions
From FANTOM5_SSTAR
Jump to: navigation, search
(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:6692 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:11246 |TSSclas...") |
No edit summary |
||
Line 2: | Line 2: | ||
|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=6692 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=11246 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=F5H877,O43278 | ||
|association_with_transcript=123bp_to_ENST00000536281,NM_003710,NM_181642,uc001zna.2,uc001znb.2_5end | |association_with_transcript=123bp_to_ENST00000536281,NM_003710,NM_181642,uc001zna.2,uc001znb.2_5end | ||
|cluster_id=chr15:41136369..41136420,+ | |cluster_id=chr15:41136369..41136420,+ |
Latest revision as of 13:58, 17 September 2015
Short description: | p3@SPINT1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SPINT1_5end |
Coexpression cluster: | C1334_Alveolar_gall_Renal_nasal_Prostate_signet_colon |
Association with transcript: | 123bp_to_ENST00000536281, NM_003710, NM_181642, uc001zna.2, uc001znb.2_5end |
EntrezGene: | SPINT1 |
HGNC: | 11246 |
UniProt: | F5H877O43278 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@SPINT1 |
---|
0
25
50
75
100
125
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.44e-33 | 253 |
endo-epithelial cell | 4.41e-22 | 42 |
endodermal cell | 1.80e-16 | 58 |
respiratory epithelial cell | 2.24e-12 | 13 |
germ line cell | 2.46e-09 | 7 |
germ cell | 2.46e-09 | 7 |
epithelial cell of alimentary canal | 5.15e-09 | 20 |
epithelial cell of tracheobronchial tree | 1.23e-08 | 9 |
epithelial cell of lower respiratory tract | 1.23e-08 | 9 |
general ecto-epithelial cell | 4.71e-08 | 14 |
Showing 1 to 10 of 13 entries
Ontology term | p-value | n |
---|---|---|
endoderm-derived structure | 1.56e-24 | 160 |
endoderm | 1.56e-24 | 160 |
presumptive endoderm | 1.56e-24 | 160 |
digestive system | 2.42e-17 | 145 |
digestive tract | 2.42e-17 | 145 |
primitive gut | 2.42e-17 | 145 |
subdivision of digestive tract | 2.26e-15 | 118 |
renal system | 2.78e-14 | 48 |
urinary system structure | 1.02e-13 | 47 |
respiratory system | 1.30e-12 | 74 |
Showing 1 to 10 of 38 entries
Ontology term | p-value | n |
---|---|---|
carcinoma | 2.11e-17 | 106 |
squamous cell carcinoma | 1.09e-11 | 14 |
cell type cancer | 1.26e-11 | 143 |
adenocarcinoma | 6.61e-08 | 25 |
Showing 1 to 4 of 4 entries