FFCP PHASE1:Hg19::chr11:33279817..33279848,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:33279817..33279848,+
|short_description=p4@HIPK3
|description=CAGE_peak_4_at_HIPK3_5end
|association_with_transcript=-28bp_to_ENST00000456517,ENST00000531...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10114 | |EntrezGene=10114 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4915 | |HGNC=4915 | ||
|TSSclassifier=strong | |||
|UniProt=E9PKD7 | |UniProt=E9PKD7 | ||
|association_with_transcript=-28bp_to_ENST00000456517,ENST00000531504,uc009yjv.1_5end | |||
|cluster_id=chr11:33279817..33279848,+ | |||
|description=CAGE_peak_4_at_HIPK3_5end | |||
|id=chr11:33279817..33279848,+ | |||
|ontology_enrichment_celltype=CL:0002057!2.07e-17!42;CL:0000860!4.54e-17!45;CL:0000766!2.12e-15!76;CL:0002009!5.10e-14!65;CL:0002194!5.97e-14!63;CL:0000576!5.97e-14!63;CL:0000040!5.97e-14!63;CL:0000559!5.97e-14!63;CL:0000557!1.92e-13!71;CL:0000839!9.83e-13!70;CL:0000763!4.35e-11!112;CL:0000049!4.35e-11!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.24e-15;33!CL:0002057;2.24e-15;33!CL:0000576;1.45e-14;48!CL:0000473;7.14e-12;39!CL:0000234;7.14e-12;39!CL:0000766;2.07e-09;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,1.34e-21,42;CL:0002057,1.34e-21,42;CL:0000473,1.36e-19,48;CL:0000234,1.36e-19,48;CL:0000766,5.05e-18,72;CL:0002194,4.13e-17,59;CL:0000576,4.13e-17,59;CL:0000040,4.13e-17,59;CL:0000559,4.13e-17,59;CL:0002009,5.65e-17,61;CL:0000557,8.53e-16,67;CL:0000839,1.02e-14,66;CL:0000763,5.29e-13,108;CL:0000049,5.29e-13,108 | |||
|ontology_enrichment_development_v019=CL:0002057;2.52e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.59e-25!115;UBERON:0002390!7.89e-15!102;UBERON:0003061!7.89e-15!102;UBERON:0002193!2.75e-14!112;UBERON:0002371!1.30e-13!80;UBERON:0001474!9.22e-13!86;UBERON:0002405!3.65e-12!115;UBERON:0000468!1.85e-10!659;UBERON:0004765!6.45e-10!101;UBERON:0001434!6.45e-10!101;UBERON:0000062!1.12e-09!511;UBERON:0000467!1.80e-08!625;UBERON:0000480!3.04e-08!626;UBERON:0002204!1.03e-07!167;UBERON:0002050!3.15e-07!605;UBERON:0005423!3.15e-07!605;UBERON:0000923!3.58e-07!604;UBERON:0005291!3.58e-07!604;UBERON:0006598!3.58e-07!604;UBERON:0002532!3.58e-07!604;UBERON:0000922!6.68e-07!612 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;7.93e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.76e-27,114;UBERON:0002390,4.54e-17,98;UBERON:0003061,4.54e-17,98;UBERON:0002193,1.29e-16,108;UBERON:0002371,3.52e-15,76;UBERON:0002405,3.64e-14,93;UBERON:0001474,5.93e-14,82;UBERON:0004765,2.99e-13,90;UBERON:0001434,1.93e-10,100;UBERON:0003081,6.76e-09,203;UBERON:0000926,1.58e-08,315;UBERON:0004120,1.58e-08,315;UBERON:0006603,1.58e-08,315;UBERON:0002204,3.88e-08,167;UBERON:0000923,7.98e-08,560;UBERON:0010316,7.98e-08,560;UBERON:0005291,7.98e-08,560;UBERON:0006598,7.98e-08,560;UBERON:0010317,7.98e-08,560;UBERON:0002532,7.98e-08,560;UBERON:0002050,2.27e-07,564;UBERON:0005423,9.30e-07,581 | |||
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| ||
|short_description=p4@HIPK3 | |||
}} | }} |
Latest revision as of 16:29, 17 September 2015
Short description: | p4@HIPK3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_HIPK3_5end |
Coexpression cluster: | NA |
Association with transcript: | -28bp_to_ENST00000456517, ENST00000531504, uc009yjv.1_5end |
EntrezGene: | HIPK3 |
HGNC: | 4915 |
UniProt: | E9PKD7 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 1.34e-21 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.34e-21 | 42 |
defensive cell | 1.36e-19 | 48 |
phagocyte | 1.36e-19 | 48 |
myeloid leukocyte | 5.05e-18 | 72 |
monopoietic cell | 4.13e-17 | 59 |
monocyte | 4.13e-17 | 59 |
monoblast | 4.13e-17 | 59 |
promonocyte | 4.13e-17 | 59 |
macrophage dendritic cell progenitor | 5.65e-17 | 61 |
granulocyte monocyte progenitor cell | 8.53e-16 | 67 |
myeloid lineage restricted progenitor cell | 1.02e-14 | 66 |
myeloid cell | 5.29e-13 | 108 |
common myeloid progenitor | 5.29e-13 | 108 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.76e-27 | 114 |
hematopoietic system | 4.54e-17 | 98 |
blood island | 4.54e-17 | 98 |
hemolymphoid system | 1.29e-16 | 108 |
bone marrow | 3.52e-15 | 76 |
immune system | 3.64e-14 | 93 |
bone element | 5.93e-14 | 82 |
skeletal element | 2.99e-13 | 90 |
skeletal system | 1.93e-10 | 100 |
lateral plate mesoderm | 6.76e-09 | 203 |
mesoderm | 1.58e-08 | 315 |
mesoderm-derived structure | 1.58e-08 | 315 |
presumptive mesoderm | 1.58e-08 | 315 |
musculoskeletal system | 3.88e-08 | 167 |
germ layer | 7.98e-08 | 560 |
germ layer / neural crest | 7.98e-08 | 560 |
embryonic tissue | 7.98e-08 | 560 |
presumptive structure | 7.98e-08 | 560 |
germ layer / neural crest derived structure | 7.98e-08 | 560 |
epiblast (generic) | 7.98e-08 | 560 |
embryonic structure | 2.27e-07 | 564 |
developing anatomical structure | 9.30e-07 | 581 |