FFCP PHASE1:Hg19::chr12:16760004..16760017,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=55885 | |EntrezGene=55885 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6643 | |HGNC=6643 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=38bp_to_ENST00000543721_5end | |association_with_transcript=38bp_to_ENST00000543721_5end | ||
|cluster_id=chr12:16760004..16760017,- | |||
|coexpression_cluster_id=C3 | |||
|description=CAGE_peak_19_at_LMO3_5end | |description=CAGE_peak_19_at_LMO3_5end | ||
|id=chr12:16760004..16760017,- | |id=chr12:16760004..16760017,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.00e-11;82!UBERON:0006222;1.13e-08;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.68e-64!57;UBERON:0005068!2.68e-64!57;UBERON:0006241!2.68e-64!57;UBERON:0007135!2.68e-64!57;UBERON:0003080!6.12e-57!42;UBERON:0007023!2.31e-56!115;UBERON:0002616!6.39e-56!59;UBERON:0002780!4.32e-55!41;UBERON:0001890!4.32e-55!41;UBERON:0006240!4.32e-55!41;UBERON:0001017!7.58e-54!82;UBERON:0000955!7.54e-53!69;UBERON:0006238!7.54e-53!69;UBERON:0005743!8.36e-53!86;UBERON:0000073!3.12e-50!94;UBERON:0001016!3.12e-50!94;UBERON:0001893!2.90e-49!34;UBERON:0002020!5.03e-49!34;UBERON:0003528!5.03e-49!34;UBERON:0002791!2.35e-47!33;UBERON:0001869!8.33e-46!32;UBERON:0002346!1.67e-43!90;UBERON:0003075!3.68e-42!86;UBERON:0007284!3.68e-42!86;UBERON:0003056!5.60e-38!61;UBERON:0002619!7.81e-38!22;UBERON:0001950!6.10e-34!20;UBERON:0000956!1.12e-32!25;UBERON:0000203!1.12e-32!25;UBERON:0000033!1.23e-26!123;UBERON:0000153!9.24e-25!129;UBERON:0007811!9.24e-25!129;UBERON:0000924!1.10e-23!173;UBERON:0006601!1.10e-23!173;UBERON:0004121!1.99e-22!169;UBERON:0002420!2.12e-18!9;UBERON:0007245!2.12e-18!9;UBERON:0010009!2.12e-18!9;UBERON:0010011!2.12e-18!9;UBERON:0000454!2.12e-18!9;UBERON:0002308!5.77e-18!9;UBERON:0000125!5.77e-18!9;UBERON:0009663!2.04e-14!7;UBERON:0000200!1.25e-13!6;UBERON:0000025!2.09e-13!194;UBERON:0001871!3.23e-13!7;UBERON:0004111!3.69e-12!241;UBERON:0002298!5.36e-12!8;UBERON:0000349!1.25e-11!5;UBERON:0001872!4.24e-11!5;UBERON:0000477!2.40e-10!286;UBERON:0000475!6.80e-10!365;UBERON:0000369!1.06e-09!4;UBERON:0002435!1.06e-09!4;UBERON:0000204!1.06e-09!4;UBERON:0010082!1.06e-09!4;UBERON:0003076!1.21e-09!15;UBERON:0003057!1.21e-09!15;UBERON:0000483!1.99e-08!309;UBERON:0000119!3.28e-08!312;UBERON:0004733!1.01e-07!12;UBERON:0002028!1.01e-07!12;UBERON:0007277!1.01e-07!12;UBERON:0002771!1.02e-07!3;UBERON:0005383!1.32e-07!3;UBERON:0005382!1.32e-07!3;UBERON:0001894!2.11e-07!7;UBERON:0006222!2.11e-07!7;UBERON:0000988!2.45e-07!3;UBERON:0004732!4.93e-07!13;UBERON:0002021!5.64e-07!5 | |||
|ontology_enrichment_uberon_v019=UBERON:0002791;1.04e-50;32!UBERON:0001869;2.19e-49;32!UBERON:0001893;1.95e-47;34!UBERON:0003528;4.99e-46;34!UBERON:0002020;4.99e-46;34!UBERON:0002619;2.61e-44;22!UBERON:0001950;6.08e-41;20!UBERON:0002780;1.66e-39;41!UBERON:0001890;1.66e-39;41!UBERON:0000956;5.84e-39;25!UBERON:0000203;5.84e-39;25!UBERON:0000073;1.18e-31;53!UBERON:0002616;1.18e-31;53!UBERON:0001870;5.60e-23;3!UBERON:0000955;1.22e-22;68!UBERON:0001017;1.51e-22;75!UBERON:0002420;1.16e-20;9!UBERON:0007245;1.16e-20;9!UBERON:0010009;1.16e-20;9!UBERON:0010011;1.16e-20;9!UBERON:0000454;1.16e-20;9!UBERON:0000200;5.03e-20;6!UBERON:0001016;5.72e-18;83!UBERON:0000369;2.16e-17;4!UBERON:0002435;2.16e-17;4!UBERON:0000204;2.16e-17;4!UBERON:0009663;3.36e-17;7!UBERON:0002702;1.23e-15;2!UBERON:0000349;2.79e-14;5!UBERON:0001872;8.86e-14;5!UBERON:0000125;2.00e-13;9!UBERON:0002308;2.00e-13;9!UBERON:0005383;9.80e-11;3!UBERON:0005382;9.80e-11;3!UBERON:0007023;1.25e-10;114!UBERON:0011216;3.53e-09;132!UBERON:0001882;4.18e-09;1!UBERON:0002022;4.18e-09;1!UBERON:0003112;4.18e-09;1!UBERON:0011158;4.18e-09;1!UBERON:0003128;4.18e-09;1!UBERON:0005403;4.18e-09;1!UBERON:0001703;4.18e-09;1!UBERON:0002241;4.18e-09;1!UBERON:0002581;1.13e-08;1!UBERON:0002902;1.13e-08;1!UBERON:0002336;1.13e-08;1!UBERON:0001874;1.13e-08;1!UBERON:0000996;1.13e-08;1!UBERON:0011215;1.13e-08;1!UBERON:0001018;1.13e-08;1!UBERON:0002473;1.13e-08;1!UBERON:0005340;1.13e-08;1!UBERON:0003544;1.13e-08;1!UBERON:0005970;1.13e-08;1!UBERON:0009899;1.13e-08;1!UBERON:0002316;1.13e-08;1!UBERON:0001020;1.13e-08;1!UBERON:0002437;1.13e-08;1!UBERON:0002021;8.91e-07;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001893,1.12e-57,34;UBERON:0002791,2.63e-54,32;UBERON:0001869,2.63e-54,32;UBERON:0002780,1.81e-53,41;UBERON:0001890,1.81e-53,41;UBERON:0003080,1.81e-53,41;UBERON:0006240,1.81e-53,41;UBERON:0000073,4.71e-51,53;UBERON:0002616,4.71e-51,53;UBERON:0003528,4.87e-51,34;UBERON:0002020,4.87e-51,34;UBERON:0001049,3.51e-48,56;UBERON:0005068,3.51e-48,56;UBERON:0006241,3.51e-48,56;UBERON:0007135,3.51e-48,56;UBERON:0001017,1.72e-47,81;UBERON:0000955,2.57e-47,68;UBERON:0006238,2.57e-47,68;UBERON:0002619,3.60e-44,22;UBERON:0001016,1.84e-42,89;UBERON:0001950,1.02e-40,20;UBERON:0000956,7.75e-39,25;UBERON:0000203,7.75e-39,25;UBERON:0003056,3.58e-35,61;UBERON:0003075,5.67e-32,82;UBERON:0007284,5.67e-32,82;UBERON:0007023,1.62e-30,114;UBERON:0002346,2.45e-30,86;UBERON:0010371,1.63e-24,104;UBERON:0001870,2.86e-23,3;UBERON:0010314,8.29e-21,132;UBERON:0002420,1.32e-20,9;UBERON:0007245,1.32e-20,9;UBERON:0010009,1.32e-20,9;UBERON:0010011,1.32e-20,9;UBERON:0000454,1.32e-20,9;UBERON:0004121,1.49e-20,171;UBERON:0000924,1.49e-20,171;UBERON:0006601,1.49e-20,171;UBERON:0000200,3.24e-20,6;UBERON:0011216,1.08e-19,223;UBERON:0000369,1.55e-17,4;UBERON:0002435,1.55e-17,4;UBERON:0000204,1.55e-17,4;UBERON:0010082,1.55e-17,4;UBERON:0009663,3.52e-17,7;UBERON:0002702,6.29e-16,2;UBERON:0000349,2.80e-14,5;UBERON:0001872,1.26e-13,5;UBERON:0000125,2.07e-13,9;UBERON:0002308,2.07e-13,9;UBERON:0000025,1.19e-11,192;UBERON:0005383,6.29e-11,3;UBERON:0005382,6.29e-11,3;UBERON:0004111,7.01e-11,240;UBERON:0003112,3.31e-09,1;UBERON:0011158,3.31e-09,1;UBERON:0003128,3.31e-09,1;UBERON:0001703,3.31e-09,1;UBERON:0002241,3.31e-09,1;UBERON:0004761,3.31e-09,1;UBERON:0009617,3.31e-09,1;UBERON:0002022,4.52e-09,1;UBERON:0001882,5.28e-09,1;UBERON:0005403,5.28e-09,1;UBERON:0001874,6.65e-09,1;UBERON:0002581,1.32e-08,1;UBERON:0000996,1.42e-08,1;UBERON:0002336,1.65e-08,1;UBERON:0011215,1.65e-08,1;UBERON:0001018,1.65e-08,1;UBERON:0002473,1.65e-08,1;UBERON:0005340,1.65e-08,1;UBERON:0003544,1.65e-08,1;UBERON:0005970,1.65e-08,1;UBERON:0002316,1.65e-08,1;UBERON:0001020,1.65e-08,1;UBERON:0002437,1.65e-08,1;UBERON:0002902,2.22e-08,1;UBERON:0009899,2.22e-08,1;UBERON:0000483,9.19e-07,306 | |||
|phase1_expression=0.726713517082227,0.642301571672949,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,3.90419561572865,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,2.11004124615769,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,1.93866549219044,1.94813006139888,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,1.5677537021303,1.52581736317083,0.331737779793674,0,1.75508317723178,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0,1.21322039365219,0,1.40558667435203,0,0,0,0.394584402849391,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0.441280633457501,0,0,0,2.15256706249988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,1.77064427945048,0,0,0,0,0,2.12623448303086,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.904980694530854,0.52893040697076,0,0,0.106787412567695,0.471612915298998,0.828478110694391,0,0,0,0,0,0.5013797880454,0.612691153526923,0,0,1.77213635993397,2.56255156294123,1.6274820991845,0,0.332787154610557,0.869349641179368,0.415045904808692,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0,0.212574920101683,0.495743057036009,0,0,0,0,0,0,2.0553352030867,0,0.319267718114302,0.615349092722265,1.26035848110859,1.03735878696327,2.58361033010962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0.781078098613847,1.44680757550829,1.20490039368423,0.546974809018219,0,0,0,0,0,0.672567444437648,0.606965604236632,0.455324382702595,0,0,0,2.51488012014277,1.38122824481983,1.06374456795571,0,0.470958557103084,1.88538707899202,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0.588925401344836,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.883889372481891,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.151557396436479,0,0,0.620597975171371,0,0,0,0,0.224263725161227,0.509177266225319,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,1.33151354837103,0,0 | |phase1_expression=0.726713517082227,0.642301571672949,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0787107813136792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.311211035399766,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0.434343920002738,0,0.358121926479791,0,0,0,0,0,3.90419561572865,0,0.167516265334349,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.511707249066704,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206082023295445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255225424989168,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.557409525377156,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.586032717087576,0,0,0,0,0,0,0.994147647766298,2.11004124615769,0,0,0,0,0,0,0,0,0,0,0,0,0.295930216910801,0,0,1.93866549219044,1.94813006139888,0,0,0,0.724999575434793,0,0,0,0,0,0,0.885741385813839,1.5677537021303,1.52581736317083,0.331737779793674,0,1.75508317723178,0,0,0.384751292518985,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0.296521128680622,0,0,1.21322039365219,0,1.40558667435203,0,0,0,0.394584402849391,0,0.61214552326098,0,0,0,0,0,0,0,0,0,0,0,0,0.17472666824203,0,0,0,0,0.0969890164884194,0.441280633457501,0,0,0,2.15256706249988,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.20084057741958,0.273810757783986,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.795229689809303,1.77064427945048,0,0,0,0,0,2.12623448303086,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0.326587360109409,0,0,0,0,0,0,0.904980694530854,0.52893040697076,0,0,0.106787412567695,0.471612915298998,0.828478110694391,0,0,0,0,0,0.5013797880454,0.612691153526923,0,0,1.77213635993397,2.56255156294123,1.6274820991845,0,0.332787154610557,0.869349641179368,0.415045904808692,0,0,0,0,0,0.434763085832475,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.967809053062115,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107824811396682,0.157265941855896,0,0,0.212574920101683,0.495743057036009,0,0,0,0,0,0,2.0553352030867,0,0.319267718114302,0.615349092722265,1.26035848110859,1.03735878696327,2.58361033010962,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.945526184657525,0.781078098613847,1.44680757550829,1.20490039368423,0.546974809018219,0,0,0,0,0,0.672567444437648,0.606965604236632,0.455324382702595,0,0,0,2.51488012014277,1.38122824481983,1.06374456795571,0,0.470958557103084,1.88538707899202,0,0,0,0,0.285906176706625,0,0,0,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.490296643507811,0,0.588925401344836,0,0.4226557275834,0,0,0,0,0,0,0,0,0,0.286679166302903,0,0.883889372481891,0.436350690340377,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.151557396436479,0,0,0.620597975171371,0,0,0,0,0.224263725161227,0.509177266225319,0.202117188958219,0,0,0,0,0,0,0,0,0,0,0.244482888365733,0,1.33151354837103,0,0 | ||
|short_description=p19@LMO3 | |short_description=p19@LMO3 | ||
}} | }} |
Latest revision as of 16:29, 17 September 2015
Short description: | p19@LMO3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_19_at_LMO3_5end |
Coexpression cluster: | C3_occipital_temporal_insula_medial_postcentral_frontal_amygdala |
Association with transcript: | 38bp_to_ENST00000543721_5end |
EntrezGene: | LMO3 |
HGNC: | 6643 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data