FFCP PHASE1:Hg19::chr2:58273887..58273898,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7444 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12719 | |||
|TSSclassifier=strong | |||
|UniProt= | |||
|association_with_transcript=37bp_to_ENST00000440705_5end | |||
|cluster_id=chr2:58273887..58273898,+ | |||
|coexpression_cluster_id=C65 | |||
|description=CAGE_peak_5_at_VRK2_5end | |||
|id=chr2:58273887..58273898,+ | |||
|ontology_enrichment_celltype=CL:0002057!9.77e-25!42;CL:0000860!8.56e-24!45;CL:0002009!1.96e-18!65;CL:0002194!2.60e-18!63;CL:0000576!2.60e-18!63;CL:0000040!2.60e-18!63;CL:0000559!2.60e-18!63;CL:0000557!2.38e-17!71;CL:0000839!5.72e-17!70;CL:0000763!2.25e-15!112;CL:0000049!2.25e-15!112;CL:0000766!2.57e-15!76;CL:0000988!1.78e-10!182;CL:0000037!2.06e-10!172;CL:0000566!2.06e-10!172;CL:0002032!1.27e-09!165;CL:0000837!1.27e-09!165;CL:0002031!2.36e-09!124;CL:0000738!3.15e-09!140;CL:0002087!3.75e-09!119;CL:0000012!6.72e-07!682 | |||
|ontology_enrichment_celltype_v019=CL:0000860;5.80e-60;33!CL:0002057;5.80e-60;33!CL:0000473;1.18e-43;39!CL:0000234;1.18e-43;39!CL:0000576;6.65e-37;48!CL:0000766;1.65e-18;69!CL:0000763;1.28e-11;100!CL:0002087;2.69e-11;104!CL:0000784;5.74e-08;3!CL:0000738;1.86e-07;136 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.66e-65,42;CL:0002057,6.66e-65,42;CL:0000473,7.83e-59,48;CL:0000234,7.83e-59,48;CL:0002194,2.12e-50,59;CL:0000576,2.12e-50,59;CL:0000040,2.12e-50,59;CL:0000559,2.12e-50,59;CL:0002009,2.06e-48,61;CL:0000839,5.73e-44,66;CL:0000557,3.70e-43,67;CL:0000766,8.57e-42,72;CL:0000763,9.66e-31,108;CL:0000049,9.66e-31,108;CL:0002087,3.92e-28,115;CL:0000738,1.50e-27,136;CL:0000988,1.62e-26,177;CL:0002031,1.77e-26,120;CL:0000037,8.33e-25,168;CL:0002032,1.56e-22,161;CL:0000837,1.56e-22,161;CL:0000134,1.24e-10,354;CL:0002320,3.77e-10,361;CL:0000034,1.82e-09,441;CL:0000048,3.95e-09,427;CL:0000723,8.57e-09,433;CL:0000219,1.83e-08,386;CL:0000784,6.49e-08,3 | |||
|ontology_enrichment_development_v019=CL:0002057;4.28e-47;42!CL:0000049;1.37e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004765!9.97e-17!101;UBERON:0001434!9.97e-17!101;UBERON:0001474!3.80e-16!86;UBERON:0002371!1.49e-15!80;UBERON:0002390!5.49e-15!102;UBERON:0003061!5.49e-15!102;UBERON:0002193!3.09e-12!112;UBERON:0002204!8.04e-12!167;UBERON:0002405!3.65e-09!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,1.87e-41,76;UBERON:0001474,1.27e-37,82;UBERON:0004765,2.89e-35,90;UBERON:0002390,3.40e-35,98;UBERON:0003061,3.40e-35,98;UBERON:0002405,7.50e-34,93;UBERON:0002193,7.42e-31,108;UBERON:0001434,1.27e-30,100;UBERON:0002204,3.06e-19,167;UBERON:0003081,3.29e-17,203;UBERON:0000926,9.56e-10,315;UBERON:0004120,9.56e-10,315;UBERON:0006603,9.56e-10,315;UBERON:0002384,1.71e-09,371 | |||
|phase1_expression=0.181678379270557,0,0.422863212287913,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0.662794751455832,0.672325146451775,0,0,0.487932798790507,0,0,0,0.572471974262113,0.273748850145768,0.627713197974014,1.14620108621927,0.57470412614962,0.314843125254717,0,0.767658796194425,0.309632246632152,0,0,1.10926203050036,0.232401601740905,0,1.76160263600908,0.553995408531877,1.00272223735071,0.651032612147555,0.223915474239924,0.32389366601898,1.03030227053675,3.05336301437086,2.26725566213286,5.09426528494414,2.09186133215116,4.11167888021826,1.85823822537062,4.02769349251011,4.35473201099471,3.78371567821736,2.41321976515633,1.93645405075148,2.70852973188684,3.20011977222428,1.91034305040492,3.14612878223118,4.28517449319264,3.53021929783703,1.91801137739712,3.29851300186716,3.39088217956774,4.26224750532694,3.19230162491442,2.8369261234557,3.11411124497787,3.51748131359441,3.12889751052121,1.73751075764093,3.02699751316684,2.57794345191295,2.84816148696796,1.05627643155971,1.27562579979026,1.67726916406701,0.44931452458598,0.750884464207532,0.803627933485401,0.285012743741249,0.39783335439818,0.91332076882317,5.27988733383968,1.09227722252426,0.889509253863555,0.426730222566507,0.800791974072025,0,0,0,0,1.17447437874188,1.14681968437569,1.32171328579026,1.12101712596307,0.790152254325231,0,0,0.205601498999509,0.167186495390678,0,0,0,0.111410456885174,0,0,0,0.128091319725675,0,0,0.276350017785848,0.289803085735052,0,0.267540828089713,0,0.226618685395132,0.383220493601921,0,0,0,0,0,0.150575119077773,0,0,0,0,0,0,0,0,0,0.255725123687061,1.44575660953827,0.50133791063589,0.289693037921647,0,0.973269740605272,0.378139268656271,0.221729397462564,0.351339142772504,0.196468613246569,0,0,0,0.348259474598534,0.26591592103773,1.43094374583205,1.14398982156026,2.22874500797739,0.198762407366705,0,0,0,0,0,0.417989933073621,0,0.35576626268671,0.33472061276467,0.402829317109147,0.760272105718513,0.732186172644509,0.367663080345869,0,0.714397826272638,0.44905874525234,0.450445921933289,0,0,0,1.31780417436063,0,0,0.993943903390637,0.506522046658319,0.529636723252875,1.14734648299525,1.06400514659507,0,0,0.24666754841716,0.933633106199299,0.269421344139376,0.163461903113459,0,0,0.468642863667593,0.312160076830321,0,0.298897361103602,0.939475989150119,0.323745888736263,0.140450806702248,0.408308342509787,0.122834317311768,0.413303124703062,0,0,0,0,0,0.125118519871964,0.831192346452549,0.438977620880838,0.30648779579902,0.600952235626387,0.453728732640084,0.89694817844431,0,0,0.300091096084402,0.103052529238439,0.515281080091258,0.930584281657949,0.675105328965065,0.0974370051611986,1.00973509697646,0.0920498986422993,0.161646056818812,0.355009592516614,0.503760491138201,0,1.35282597214308,0.818238361772504,0.286804595389004,0.121973706129595,0.265059536642971,0,0.10366105501537,0,0.36497735907583,1.56449532329816,0,0,0,0,0.236613600079688,0,0.482022059766964,0.330881918197182,0.435758888184812,0.949082476444386,0.674156540800822,0,0.38474715694639,0,0,0,0,0,0,0,0,0,0.171567810298526,0.109750285408626,0,0.402115889646523,0.185176890317059,0,0,0,0.34779121492523,0.117408694235822,0,0,0.570762456703795,0,0,1.23108503043699,0.234004265139238,0.594524649154913,0,1.34385702559088,0.425325291727159,0.626909658919938,2.03443756959773,0,0,0.880484340132261,0.207328115540772,0.864719720501769,0.25248486685276,0.444485260045183,0.381988425558278,0,0,0.411309970813294,0,0,0,0,0.2933531432838,0,0,0.845302752556,0.797814349754612,0,0,1.41849132023278,0,0.285955987316295,0,0,0,0.355391948742546,0,0.301439377059586,0.871533458600294,0.399891964728228,0,0,0,0.239624855491583,1.14861935834114,5.70547620162874,0.434343920002738,0.410952645100767,0.358121926479791,0.448340575974109,0.197030760201927,0.431255149719035,0.128343036279748,0.254094624222463,0,0,0,0,0,0,0,0.24538298343828,0.500170521059677,0,0.415941723061614,1.24900292158013,0.630809660135739,0.702848489956279,0,0,0,0,0.184369168541703,0.347534457872331,0,0,0.620304078368662,0.215714200818617,0.213455115606889,0,0,0.604780586659361,0,0.306923946576125,0.561320188866147,0.512556597022804,0,0.160853921143607,0,0.616838775210622,0.532685175939381,0.410635780069046,0.519254429183621,0.232420756919918,0.483437798366489,0.601519410909855,1.19705285616665,0.574072240823034,0.364182336013434,0.655622074797121,0,0.231046011313244,0,0,0.211103257785751,0,0.170093705276516,0,0,0,0.501689773854853,0,0,0,0.219259876645935,0,0,0,0,0.206082023295445,0.27470839445503,0.660075999364704,0,0,1.6068392984416,0.193341436584244,0,0.614014698904518,0.275673144969061,0.537101224341368,0.870100163485371,0.340906509664404,0.267096106940212,0.991709492165869,0.576570202095319,0.765676274967505,0.708104465988849,0.464845549297286,0.62962469366128,1.3940745403212,0,0,0,0.55597265731176,0.858749320451947,1.48863347743867,0,0.190630193923825,0,0.42793898803392,0,0,0.359744915166629,0,0.353437207037059,0,1.58510321173008,0,0.975267478179181,0.974853958525138,0,0.272999822815972,0,1.13008116620243,0.55136534354612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| |||
|short_description=p5@VRK2 | |||
}} |
Latest revision as of 19:05, 17 September 2015
Short description: | p5@VRK2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_VRK2_5end |
Coexpression cluster: | C65_CD14_Eosinophils_Monocytederived_Basophils_immature_Macrophage_Neutrophils |
Association with transcript: | 37bp_to_ENST00000440705_5end |
EntrezGene: | VRK2 |
HGNC: | 12719 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.66e-65 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.66e-65 | 42 |
defensive cell | 7.83e-59 | 48 |
phagocyte | 7.83e-59 | 48 |
monopoietic cell | 2.12e-50 | 59 |
monocyte | 2.12e-50 | 59 |
monoblast | 2.12e-50 | 59 |
promonocyte | 2.12e-50 | 59 |
macrophage dendritic cell progenitor | 2.06e-48 | 61 |
myeloid lineage restricted progenitor cell | 5.73e-44 | 66 |
granulocyte monocyte progenitor cell | 3.70e-43 | 67 |
myeloid leukocyte | 8.57e-42 | 72 |
myeloid cell | 9.66e-31 | 108 |
common myeloid progenitor | 9.66e-31 | 108 |
nongranular leukocyte | 3.92e-28 | 115 |
leukocyte | 1.50e-27 | 136 |
hematopoietic cell | 1.62e-26 | 177 |
hematopoietic lineage restricted progenitor cell | 1.77e-26 | 120 |
hematopoietic stem cell | 8.33e-25 | 168 |
hematopoietic oligopotent progenitor cell | 1.56e-22 | 161 |
hematopoietic multipotent progenitor cell | 1.56e-22 | 161 |
mesenchymal cell | 1.24e-10 | 354 |
connective tissue cell | 3.77e-10 | 361 |
stem cell | 1.82e-09 | 441 |
multi fate stem cell | 3.95e-09 | 427 |
somatic stem cell | 8.57e-09 | 433 |
motile cell | 1.83e-08 | 386 |
plasmacytoid dendritic cell | 6.49e-08 | 3 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 1.87e-41 | 76 |
bone element | 1.27e-37 | 82 |
skeletal element | 2.89e-35 | 90 |
hematopoietic system | 3.40e-35 | 98 |
blood island | 3.40e-35 | 98 |
immune system | 7.50e-34 | 93 |
hemolymphoid system | 7.42e-31 | 108 |
skeletal system | 1.27e-30 | 100 |
musculoskeletal system | 3.06e-19 | 167 |
lateral plate mesoderm | 3.29e-17 | 203 |
mesoderm | 9.56e-10 | 315 |
mesoderm-derived structure | 9.56e-10 | 315 |
presumptive mesoderm | 9.56e-10 | 315 |
connective tissue | 1.71e-09 | 371 |