FFCP PHASE1:Hg19::chr11:35211437..35211460,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:35211437..35211460,+
|short_description=p8@CD44
|description=CAGE_peak_8_at_CD44_5end
|association_with_transcript=0bp_to_ENST00000533222_5end
|EntrezGen...") |
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(11 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=960 | |EntrezGene=960 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1681 | |HGNC=1681 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000533222_5end | |||
|cluster_id=chr11:35211437..35211460,+ | |||
|coexpression_cluster_id=C620 | |||
|description=CAGE_peak_8_at_CD44_5end | |||
|id=chr11:35211437..35211460,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.44e-17!42;CL:0000860!9.47e-17!45;CL:0000839!1.56e-16!70;CL:0000557!2.32e-16!71;CL:0002194!2.00e-15!63;CL:0000576!2.00e-15!63;CL:0000040!2.00e-15!63;CL:0000559!2.00e-15!63;CL:0000766!3.79e-15!76;CL:0002009!5.81e-15!65;CL:0002371!8.16e-09!591;CL:0002031!1.81e-07!124;CL:0000144!2.25e-07!625;CL:0000763!8.23e-07!112;CL:0000049!8.23e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.69e-19;33!CL:0002057;2.69e-19;33!CL:0000473;3.89e-16;39!CL:0000234;3.89e-16;39!CL:0000576;1.28e-09;48!CL:0000766;1.82e-08;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000473,3.36e-19,48;CL:0000234,3.36e-19,48;CL:0000860,1.11e-18,42;CL:0002057,1.11e-18,42;CL:0000557,1.67e-17,67;CL:0000839,3.89e-17,66;CL:0000766,3.12e-16,72;CL:0002194,5.90e-16,59;CL:0000576,5.90e-16,59;CL:0000040,5.90e-16,59;CL:0000559,5.90e-16,59;CL:0002009,1.11e-15,61;CL:0000763,7.01e-08,108;CL:0000049,7.01e-08,108;CL:0000723,4.53e-07,433;CL:0000048,7.49e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.25e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002204!2.08e-14!167;UBERON:0002371!7.28e-14!80;UBERON:0004765!5.19e-12!101;UBERON:0001434!5.19e-12!101;UBERON:0001474!2.62e-11!86;UBERON:0002390!6.00e-10!102;UBERON:0003061!6.00e-10!102;UBERON:0002193!1.40e-07!112 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,3.60e-16,167;UBERON:0002371,1.57e-15,76;UBERON:0004765,4.73e-14,90;UBERON:0001434,1.60e-13,100;UBERON:0001474,3.64e-13,82;UBERON:0002390,1.57e-10,98;UBERON:0003061,1.57e-10,98;UBERON:0002405,2.92e-09,93;UBERON:0002193,8.04e-08,108;UBERON:0000926,1.62e-07,315;UBERON:0004120,1.62e-07,315;UBERON:0006603,1.62e-07,315 | |||
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| ||
|short_description=p8@CD44 | |||
}} | }} |
Latest revision as of 19:20, 17 September 2015
Short description: | p8@CD44 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_CD44_5end |
Coexpression cluster: | C620_CD14_Smooth_Fibroblast_Mast_signet_normal_meningioma |
Association with transcript: | 0bp_to_ENST00000533222_5end |
EntrezGene: | CD44 |
HGNC: | 1681 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
defensive cell | 3.36e-19 | 48 |
phagocyte | 3.36e-19 | 48 |
classical monocyte | 1.11e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.11e-18 | 42 |
granulocyte monocyte progenitor cell | 1.67e-17 | 67 |
myeloid lineage restricted progenitor cell | 3.89e-17 | 66 |
myeloid leukocyte | 3.12e-16 | 72 |
monopoietic cell | 5.90e-16 | 59 |
monocyte | 5.90e-16 | 59 |
monoblast | 5.90e-16 | 59 |
promonocyte | 5.90e-16 | 59 |
macrophage dendritic cell progenitor | 1.11e-15 | 61 |
myeloid cell | 7.01e-08 | 108 |
common myeloid progenitor | 7.01e-08 | 108 |
somatic stem cell | 4.53e-07 | 433 |
multi fate stem cell | 7.49e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 3.60e-16 | 167 |
bone marrow | 1.57e-15 | 76 |
skeletal element | 4.73e-14 | 90 |
skeletal system | 1.60e-13 | 100 |
bone element | 3.64e-13 | 82 |
hematopoietic system | 1.57e-10 | 98 |
blood island | 1.57e-10 | 98 |
immune system | 2.92e-09 | 93 |
hemolymphoid system | 8.04e-08 | 108 |
mesoderm | 1.62e-07 | 315 |
mesoderm-derived structure | 1.62e-07 | 315 |
presumptive mesoderm | 1.62e-07 | 315 |