FFCP PHASE1:Hg19::chr4:41992565..41992580,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:41992565..41992580,+
|short_description=p2@SLC30A9
|description=CAGE_peak_2_at_SLC30A9_5end
|association_with_transcript=18bp_to_ENST00000536881_5end
|Ent...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10463 | |EntrezGene=10463 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1329 | |HGNC=1329 | ||
|TSSclassifier=strong | |||
|UniProt=F5H489 | |UniProt=F5H489 | ||
|association_with_transcript=18bp_to_ENST00000536881_5end | |||
|cluster_id=chr4:41992565..41992580,+ | |||
|description=CAGE_peak_2_at_SLC30A9_5end | |||
|id=chr4:41992565..41992580,+ | |||
|ontology_enrichment_celltype=CL:0002057!4.78e-14!42;CL:0000860!6.27e-14!45;CL:0000766!2.07e-08!76;CL:0002009!3.02e-08!65;CL:0000557!6.53e-08!71;CL:0002194!1.64e-07!63;CL:0000576!1.64e-07!63;CL:0000040!1.64e-07!63;CL:0000559!1.64e-07!63;CL:0000763!2.27e-07!112;CL:0000049!2.27e-07!112;CL:0000839!2.41e-07!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;2.15e-11;33!CL:0002057;2.15e-11;33!CL:0000576;1.33e-07;48!CL:0000473;1.54e-07;39!CL:0000234;1.54e-07;39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.45e-14,42;CL:0002057,4.45e-14,42;CL:0000473,5.66e-11,48;CL:0000234,5.66e-11,48;CL:0000766,2.48e-08,72;CL:0002009,3.80e-08,61;CL:0000557,8.65e-08,67;CL:0002194,2.12e-07,59;CL:0000576,2.12e-07,59;CL:0000040,2.12e-07,59;CL:0000559,2.12e-07,59;CL:0000839,3.25e-07,66;CL:0000763,3.29e-07,108;CL:0000049,3.29e-07,108 | |||
|ontology_enrichment_development_v019=CL:0002057;1.38e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.28e-14!82;UBERON:0000073!3.03e-13!94;UBERON:0001016!3.03e-13!94;UBERON:0001049!5.93e-13!57;UBERON:0005068!5.93e-13!57;UBERON:0006241!5.93e-13!57;UBERON:0007135!5.93e-13!57;UBERON:0005743!1.89e-12!86;UBERON:0002780!4.41e-11!41;UBERON:0001890!4.41e-11!41;UBERON:0006240!4.41e-11!41;UBERON:0003080!4.60e-11!42;UBERON:0000955!3.61e-10!69;UBERON:0006238!3.61e-10!69;UBERON:0002616!8.82e-10!59;UBERON:0002020!1.08e-08!34;UBERON:0003528!1.08e-08!34;UBERON:0001869!1.48e-08!32;UBERON:0003075!4.52e-08!86;UBERON:0007284!4.52e-08!86;UBERON:0001893!5.46e-08!34;UBERON:0000956!8.76e-08!25;UBERON:0000203!8.76e-08!25;UBERON:0002791!9.17e-08!33;UBERON:0002619!2.33e-07!22 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;5.88e-08;32!UBERON:0003528;7.25e-08;34!UBERON:0002020;7.25e-08;34!UBERON:0002780;8.99e-08;41!UBERON:0001890;8.99e-08;41!UBERON:0002791;9.44e-08;32!UBERON:0000956;1.00e-07;25!UBERON:0000203;1.00e-07;25!UBERON:0002619;3.83e-07;22!UBERON:0000073;4.37e-07;53!UBERON:0002616;4.37e-07;53!UBERON:0001893;6.26e-07;34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,6.67e-15,89;UBERON:0001017,3.82e-14,81;UBERON:0001049,6.78e-13,56;UBERON:0005068,6.78e-13,56;UBERON:0006241,6.78e-13,56;UBERON:0007135,6.78e-13,56;UBERON:0000073,1.06e-11,53;UBERON:0002616,1.06e-11,53;UBERON:0002780,4.18e-11,41;UBERON:0001890,4.18e-11,41;UBERON:0003080,4.18e-11,41;UBERON:0006240,4.18e-11,41;UBERON:0000955,4.29e-10,68;UBERON:0006238,4.29e-10,68;UBERON:0003528,1.04e-08,34;UBERON:0002020,1.04e-08,34;UBERON:0001869,1.42e-08,32;UBERON:0003075,1.44e-08,82;UBERON:0007284,1.44e-08,82;UBERON:0002791,3.17e-08,32;UBERON:0001893,5.27e-08,34;UBERON:0000956,8.45e-08,25;UBERON:0000203,8.45e-08,25;UBERON:0002619,2.25e-07,22;UBERON:0002346,5.10e-07,86;UBERON:0010314,6.17e-07,132 | |||
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| ||
|short_description=p2@SLC30A9 | |||
}} | }} |
Latest revision as of 20:08, 17 September 2015
Short description: | p2@SLC30A9 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC30A9_5end |
Coexpression cluster: | NA |
Association with transcript: | 18bp_to_ENST00000536881_5end |
EntrezGene: | SLC30A9 |
HGNC: | 1329 |
UniProt: | F5H489 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.45e-14 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.45e-14 | 42 |
defensive cell | 5.66e-11 | 48 |
phagocyte | 5.66e-11 | 48 |
myeloid leukocyte | 2.48e-08 | 72 |
macrophage dendritic cell progenitor | 3.80e-08 | 61 |
granulocyte monocyte progenitor cell | 8.65e-08 | 67 |
monopoietic cell | 2.12e-07 | 59 |
monocyte | 2.12e-07 | 59 |
monoblast | 2.12e-07 | 59 |
promonocyte | 2.12e-07 | 59 |
myeloid lineage restricted progenitor cell | 3.25e-07 | 66 |
myeloid cell | 3.29e-07 | 108 |
common myeloid progenitor | 3.29e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
nervous system | 6.67e-15 | 89 |
central nervous system | 3.82e-14 | 81 |
neural tube | 6.78e-13 | 56 |
neural rod | 6.78e-13 | 56 |
future spinal cord | 6.78e-13 | 56 |
neural keel | 6.78e-13 | 56 |
regional part of nervous system | 1.06e-11 | 53 |
regional part of brain | 1.06e-11 | 53 |
regional part of forebrain | 4.18e-11 | 41 |
forebrain | 4.18e-11 | 41 |
anterior neural tube | 4.18e-11 | 41 |
future forebrain | 4.18e-11 | 41 |
brain | 4.29e-10 | 68 |
future brain | 4.29e-10 | 68 |
brain grey matter | 1.04e-08 | 34 |
gray matter | 1.04e-08 | 34 |
cerebral hemisphere | 1.42e-08 | 32 |
neural plate | 1.44e-08 | 82 |
presumptive neural plate | 1.44e-08 | 82 |
regional part of telencephalon | 3.17e-08 | 32 |
telencephalon | 5.27e-08 | 34 |
cerebral cortex | 8.45e-08 | 25 |
pallium | 8.45e-08 | 25 |
regional part of cerebral cortex | 2.25e-07 | 22 |
neurectoderm | 5.10e-07 | 86 |
structure with developmental contribution from neural crest | 6.17e-07 | 132 |