FFCP PHASE1:Hg19::chr17:76355123..76355166,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr17:76355123..76355166,- to FFCP PHASE1:Hg19::chr17:76355123..76355166,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=9021 | |EntrezGene=9021 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=19391 | |HGNC=19391 | ||
|TSSclassifier=strong | |||
|UniProt=O14543,Q5U0H7,Q6FI39 | |UniProt=O14543,Q5U0H7,Q6FI39 | ||
|association_with_transcript=9bp_to_AB006967,AF159854,BT019544,CR536497,CR541694_5end | |||
|cluster_id=chr17:76355123..76355166,- | |||
|coexpression_cluster_id=C3691 | |||
|description=CAGE_peak_4_at_SOCS3_5end | |||
|id=chr17:76355123..76355166,- | |||
|ontology_enrichment_celltype=CL:0002057!3.90e-14!42;CL:0000860!1.83e-13!45;CL:0000766!8.58e-10!76;CL:0000557!4.43e-09!71;CL:0002009!8.73e-09!65;CL:0002194!3.40e-08!63;CL:0000576!3.40e-08!63;CL:0000040!3.40e-08!63;CL:0000559!3.40e-08!63;CL:0000839!3.91e-08!70 | |||
|ontology_enrichment_celltype_v019=CL:0000860;6.06e-35;33!CL:0002057;6.06e-35;33!CL:0000473;1.79e-23;39!CL:0000234;1.79e-23;39!CL:0000576;2.42e-17;48!CL:0000766;1.55e-14;69!CL:0002087;3.60e-08;104!CL:0000763;7.78e-07;100 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,5.05e-33,42;CL:0002057,5.05e-33,42;CL:0000473,1.29e-27,48;CL:0000234,1.29e-27,48;CL:0000766,2.35e-25,72;CL:0000557,8.27e-23,67;CL:0000738,5.02e-22,136;CL:0000839,8.22e-22,66;CL:0002009,1.31e-20,61;CL:0002194,4.11e-20,59;CL:0000576,4.11e-20,59;CL:0000040,4.11e-20,59;CL:0000559,4.11e-20,59;CL:0002031,1.67e-17,120;CL:0002087,2.05e-17,115;CL:0000988,1.90e-16,177;CL:0000037,6.03e-15,168;CL:0000763,4.24e-14,108;CL:0000049,4.24e-14,108;CL:0002032,5.72e-13,161;CL:0000837,5.72e-13,161;CL:0002320,1.39e-12,361;CL:0000134,6.36e-11,354;CL:0000219,2.86e-08,386;CL:0000048,6.57e-08,427;CL:0000723,1.58e-07,433;CL:0000034,1.99e-07,441 | |||
|ontology_enrichment_development_v019=CL:0002057;1.22e-24;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!6.31e-09!115;UBERON:0004765!1.78e-08!101;UBERON:0001434!1.78e-08!101;UBERON:0001474!2.04e-08!86;UBERON:0002193!3.48e-08!112;UBERON:0002371!3.58e-08!80;UBERON:0002390!7.12e-08!102;UBERON:0003061!7.12e-08!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.34e-20,76;UBERON:0001474,3.38e-19,82;UBERON:0004765,6.12e-19,90;UBERON:0002390,1.05e-18,98;UBERON:0003061,1.05e-18,98;UBERON:0002193,4.52e-18,108;UBERON:0002405,6.25e-18,93;UBERON:0001434,5.53e-17,100;UBERON:0002384,3.19e-12,371;UBERON:0003081,9.96e-09,203;UBERON:0002204,4.48e-08,167 | |||
|phase1_expression=0.363356758541113,0,0.140954404095971,0,0,0,0,0.631719873426831,0,0,0,0.218441372130172,0,0.618831764800233,2.31978163009541,0,0,0,0,0.369363174230364,0.612002073732759,0.940364164434263,0,0.684372125364421,0.627713197974014,0,0,0,1.57345710739562,0,0.77408061658038,0,0.30120591877825,0,0,0,0,0.553995408531877,1.80490002723128,1.30206522429511,0.671746422719773,0.32389366601898,0,1.01778767145695,0,0.485168122375632,3.25400651667958,2.46700732813095,1.54853185447552,14.6723120084297,8.45330331546032,3.31075121844019,11.721353145045,7.10033151942209,12.1883837934908,3.38836211176688,1.91034305040492,1.57306439111559,17.7528657575123,6.73950956859797,12.1474053901818,8.57613380485462,5.38551875578406,2.98357325372886,11.6083695451434,9.07816359505824,9.34233373493363,9.2962006144995,7.82224377630302,5.2125322729228,4.23779651843358,4.05105399586321,4.74693581161327,0.211255286311942,0,0,0,0.150176892841506,0,0,0,0,0,0,0,0,0,0,0,0,0.569212969109448,1.76171156811282,1.14681968437569,0,1.12101712596307,0.263384084775077,0.393419540227666,1.57204305099666,5.14003747498773,0,0.651844533267181,0,0,0.668462741311041,0.294605907474837,0,0,0.640456598628376,1.04047478047903,0,0,0,1.18629250529648,0.267540828089713,2.09071047609954,0.113309342697566,0,0.34362744548263,0.253019692019503,0,0,0,0,0,0,0,0,1.20964045934839,1.06976078313403,1.01377082717959,0,0,0,0,0,2.31754430337318,0,0.486634870302636,0.189069634328136,0.665188192387692,0.263504357079378,0.261958150995425,0.364295288292542,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0.571994910780128,1.11437250398869,0,0,0,0,0,0.550236083880135,0,0.258416759169329,0,0.33472061276467,0,0,1.22031028774085,0.367663080345869,0,0,0,0.112611480483322,0,0,0,0,0,0,0.993943903390637,0.759783069987479,0.132409180813219,0.860509862246441,0.709336764396714,0,0,0,0.622422070799533,0.404132016209064,0.653847612453835,1.36221684880438,1.15235184896,0,1.87296046098192,0,0.298897361103602,0.117434498643765,0,0.140450806702248,0.408308342509787,0.368502951935304,0.516628905878827,0,0.989067717114227,0,0,0,0.125118519871964,0,0.877955241761676,0,0.751190294532984,0.113432183160021,0,0.213557388818567,0.211931901159562,0,0.206105058476878,0.257640540045629,0.18611685633159,0.168776332241266,0.194874010322397,0,0.0920498986422993,0.646584227275248,0.355009592516614,0.10075209822764,0.339121184620975,0,0.272746120590835,0,0.121973706129595,0,0,0.10366105501537,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0.134831308160164,0,0.38474715694639,0.738155454624648,2.80483547606892,0,1.47008711385542,1.26755034821831,0.982827216677626,0.590789906681404,0,0,0,0,0,0,0.0925884451585296,0,0,1.44331342025273,0.115930404975077,0,0.144366447761074,2.77791307545966,0.570762456703795,0,0,0,0,0.297262324577456,0,0,0.283550194484773,0,0,0,0,0,9.53709331487551,9.36779697210249,8.96321277327298,0.063497894292169,0,0,0,0,0,0,0.112131084345361,0.43596006883328,0,0,0,0,0,0,0,0,0.266422179016099,0.142977993658148,0,0,0,0,0,0,0,0,0,0.502257091432126,0,0,1.14861935834114,0,0,0.205476322550383,0,0,2.36436912242313,1.07813787429759,1.15508732651774,1.27047312111232,0,0,0,0.637938751653163,2.24702107184155,8.97484377612075,6.21623270154053,0.613457458595699,2.00068208423871,0,0.207970861530807,0.356857977594324,0,0.117141414992713,0.300946099727719,4.5481500811197,1.03473071292505,0,0.184369168541703,0.781952530212746,2.34961388955289,1.02943027143257,1.24060815673732,2.5885704098234,2.881644060693,0.303127571446259,0,0,0.248107807818777,0,0,0.384417447767103,0,0.160853921143607,0,0,1.42049380250502,1.64254312027618,1.03850885836724,0.813472649219715,0.362578348774867,0.200506470303285,0,1.03333003348146,0.364182336013434,2.62248829918848,0,0,0.784349769176855,1.46139224653261,0.211103257785751,0,0,0.647747748306418,7.71136263451447,0.270946437543853,1.00337954770971,0.254876273045038,0,0.447749509444357,0,0,0,0.984043937099117,0.325378394664303,1.54561517471583,0.457847324091717,0.082509499920588,0.574265537996172,0,1.6068392984416,0.386682873168488,0.616194468458578,0.307007349452259,0.413509717453592,0.214840489736547,0.145016693914229,0.0852266274161009,0.178064071293475,0.495854746082934,0.384380134730212,0,0.4046311234222,0,0.31481234683064,0,0.616067160352178,0,0,0.74129687641568,0.143124886741991,0,0.632758849437452,0.571890581771475,0.511795582622668,0,0.318203247925937,0,0,0.54907405947211,0.117812402345686,0,0,0,0.48763373908959,0,0,0.818999468447914,3.95935209470396,1.13008116620243,0,0,0.876901770507525,1.15755106853338,0.655894752046633,0,0,0.563391205064483,0,0,0,0,1.68886108238131,0.987884678879706,0.379473173765715,0,0.0962221127255121,0.670302275535787,0,1.22386941009813,0,0,0,0,0,0,0.569647187174163,0,0,0,0,0,0.213648142254946,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0.50787533340481,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31857361344705,0,0,0,0,0,0,0.994147647766298,0,0.445234820091624,2.80166586185491,0,0.597743964753209,3.86797481743607,0,0.20453736500431,0.1230848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| ||
|short_description=p4@SOCS3 | |||
}} | }} |
Latest revision as of 21:23, 17 September 2015
Short description: | p4@SOCS3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SOCS3_5end |
Coexpression cluster: | C3691_CD14_Mast_Neutrophils_melanoma_Osteoblast_Renal_CD4 |
Association with transcript: | 9bp_to_AB006967, AF159854, BT019544, CR536497, CR541694_5end |
EntrezGene: | SOCS3 |
HGNC: | 19391 |
UniProt: | O14543Q5U0H7Q6FI39 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 5.05e-33 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.05e-33 | 42 |
defensive cell | 1.29e-27 | 48 |
phagocyte | 1.29e-27 | 48 |
myeloid leukocyte | 2.35e-25 | 72 |
granulocyte monocyte progenitor cell | 8.27e-23 | 67 |
leukocyte | 5.02e-22 | 136 |
myeloid lineage restricted progenitor cell | 8.22e-22 | 66 |
macrophage dendritic cell progenitor | 1.31e-20 | 61 |
monopoietic cell | 4.11e-20 | 59 |
monocyte | 4.11e-20 | 59 |
monoblast | 4.11e-20 | 59 |
promonocyte | 4.11e-20 | 59 |
hematopoietic lineage restricted progenitor cell | 1.67e-17 | 120 |
nongranular leukocyte | 2.05e-17 | 115 |
hematopoietic cell | 1.90e-16 | 177 |
hematopoietic stem cell | 6.03e-15 | 168 |
myeloid cell | 4.24e-14 | 108 |
common myeloid progenitor | 4.24e-14 | 108 |
hematopoietic oligopotent progenitor cell | 5.72e-13 | 161 |
hematopoietic multipotent progenitor cell | 5.72e-13 | 161 |
connective tissue cell | 1.39e-12 | 361 |
mesenchymal cell | 6.36e-11 | 354 |
motile cell | 2.86e-08 | 386 |
multi fate stem cell | 6.57e-08 | 427 |
somatic stem cell | 1.58e-07 | 433 |
stem cell | 1.99e-07 | 441 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.34e-20 | 76 |
bone element | 3.38e-19 | 82 |
skeletal element | 6.12e-19 | 90 |
hematopoietic system | 1.05e-18 | 98 |
blood island | 1.05e-18 | 98 |
hemolymphoid system | 4.52e-18 | 108 |
immune system | 6.25e-18 | 93 |
skeletal system | 5.53e-17 | 100 |
connective tissue | 3.19e-12 | 371 |
lateral plate mesoderm | 9.96e-09 | 203 |
musculoskeletal system | 4.48e-08 | 167 |