FFCP PHASE1:Hg19::chr1:161015676..161015694,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7391 | |EntrezGene=7391 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12593 | |HGNC=12593 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=3bp_to_ENST00000491629_5end | |association_with_transcript=3bp_to_ENST00000491629_5end | ||
|cluster_id=chr1:161015676..161015694,- | |||
|description=CAGE_peak_3_at_USF1_5end | |description=CAGE_peak_3_at_USF1_5end | ||
|id=chr1:161015676..161015694,- | |id=chr1:161015676..161015694,- | ||
|ontology_enrichment_celltype=CL:0000037!5.04e-14!172;CL:0000566!5.04e-14!172;CL:0002032!5.05e-13!165;CL:0000837!5.05e-13!165;CL:0000738!1.30e-12!140;CL:0000988!3.88e-12!182;CL:0000763!1.59e-11!112;CL:0000049!1.59e-11!112;CL:0002087!2.32e-10!119;CL:0000766!4.15e-10!76;CL:0002009!4.17e-10!65;CL:0002031!1.11e-09!124;CL:0002194!3.32e-09!63;CL:0000576!3.32e-09!63;CL:0000040!3.32e-09!63;CL:0000559!3.32e-09!63;CL:0000557!1.96e-08!71;CL:0000839!5.83e-08!70;CL:0000860!6.07e-08!45;CL:0000115!6.41e-08!35;CL:0002057!1.83e-07!42;CL:0000213!5.36e-07!57;CL:0000215!5.36e-07!57;CL:0002139!9.95e-07!24 | |ontology_enrichment_celltype=CL:0000037!5.04e-14!172;CL:0000566!5.04e-14!172;CL:0002032!5.05e-13!165;CL:0000837!5.05e-13!165;CL:0000738!1.30e-12!140;CL:0000988!3.88e-12!182;CL:0000763!1.59e-11!112;CL:0000049!1.59e-11!112;CL:0002087!2.32e-10!119;CL:0000766!4.15e-10!76;CL:0002009!4.17e-10!65;CL:0002031!1.11e-09!124;CL:0002194!3.32e-09!63;CL:0000576!3.32e-09!63;CL:0000040!3.32e-09!63;CL:0000559!3.32e-09!63;CL:0000557!1.96e-08!71;CL:0000839!5.83e-08!70;CL:0000860!6.07e-08!45;CL:0000115!6.41e-08!35;CL:0002057!1.83e-07!42;CL:0000213!5.36e-07!57;CL:0000215!5.36e-07!57;CL:0002139!9.95e-07!24 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,1.11e-13,168;CL:0002032,1.10e-12,161;CL:0000837,1.10e-12,161;CL:0000738,2.83e-12,136;CL:0000988,1.00e-11,177;CL:0000763,2.99e-11,108;CL:0000049,2.99e-11,108;CL:0002087,4.92e-10,115;CL:0002009,7.07e-10,61;CL:0000766,7.39e-10,72;CL:0002031,2.33e-09,120;CL:0002194,5.75e-09,59;CL:0000576,5.75e-09,59;CL:0000040,5.75e-09,59;CL:0000559,5.75e-09,59;CL:0000557,3.56e-08,67;CL:0000473,3.99e-08,48;CL:0000234,3.99e-08,48;CL:0000115,6.27e-08,36;CL:0000839,1.07e-07,66;CL:0000860,1.79e-07,42;CL:0002057,1.79e-07,42;CL:0000213,5.74e-07,58;CL:0000215,5.74e-07,58;CL:0002139,9.66e-07,24 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!2.02e-10!112;UBERON:0002405!2.71e-10!115;UBERON:0003081!5.23e-10!216;UBERON:0002390!7.19e-09!102;UBERON:0003061!7.19e-09!102 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003081,2.16e-11,203;UBERON:0002193,3.67e-10,108;UBERON:0002405,5.60e-09,93;UBERON:0002390,1.30e-08,98;UBERON:0003061,1.30e-08,98 | |||
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| ||
|short_description=p3@USF1 | |short_description=p3@USF1 | ||
}} | }} |
Latest revision as of 04:15, 18 September 2015
Short description: | p3@USF1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_USF1_5end |
Coexpression cluster: | NA |
Association with transcript: | 3bp_to_ENST00000491629_5end |
EntrezGene: | USF1 |
HGNC: | 12593 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 1.11e-13 | 168 |
hematopoietic oligopotent progenitor cell | 1.10e-12 | 161 |
hematopoietic multipotent progenitor cell | 1.10e-12 | 161 |
leukocyte | 2.83e-12 | 136 |
hematopoietic cell | 1.00e-11 | 177 |
myeloid cell | 2.99e-11 | 108 |
common myeloid progenitor | 2.99e-11 | 108 |
nongranular leukocyte | 4.92e-10 | 115 |
macrophage dendritic cell progenitor | 7.07e-10 | 61 |
myeloid leukocyte | 7.39e-10 | 72 |
hematopoietic lineage restricted progenitor cell | 2.33e-09 | 120 |
monopoietic cell | 5.75e-09 | 59 |
monocyte | 5.75e-09 | 59 |
monoblast | 5.75e-09 | 59 |
promonocyte | 5.75e-09 | 59 |
granulocyte monocyte progenitor cell | 3.56e-08 | 67 |
defensive cell | 3.99e-08 | 48 |
phagocyte | 3.99e-08 | 48 |
endothelial cell | 6.27e-08 | 36 |
myeloid lineage restricted progenitor cell | 1.07e-07 | 66 |
classical monocyte | 1.79e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.79e-07 | 42 |
lining cell | 5.74e-07 | 58 |
barrier cell | 5.74e-07 | 58 |
endothelial cell of vascular tree | 9.66e-07 | 24 |
Ontology term | p-value | n |
---|---|---|
lateral plate mesoderm | 2.16e-11 | 203 |
hemolymphoid system | 3.67e-10 | 108 |
immune system | 5.60e-09 | 93 |
hematopoietic system | 1.30e-08 | 98 |
blood island | 1.30e-08 | 98 |