FFCP PHASE1:Hg19::chr2:73144668..73144679,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=2016 | |EntrezGene=2016 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3340 | |HGNC=3340 | ||
|TSSclassifier=strong | |||
|UniProt=Q04741 | |UniProt=Q04741 | ||
|association_with_transcript=64bp_to_ENST00000258106,NM_004097,uc002sin.1_5end | |association_with_transcript=64bp_to_ENST00000258106,NM_004097,uc002sin.1_5end | ||
|cluster_id=chr2:73144668..73144679,+ | |||
|coexpression_cluster_id=C2705 | |||
|description=CAGE_peak_5_at_EMX1_5end | |description=CAGE_peak_5_at_EMX1_5end | ||
|id=chr2:73144668..73144679,+ | |id=chr2:73144668..73144679,+ | ||
|ontology_enrichment_celltype=CL:0002605!1.25e-09!3;CL:0000242!2.50e-07!2;CL:0000128!5.61e-07!7;CL:0000126!5.61e-07!7;CL:0000127!5.61e-07!7;CL:0002453!5.61e-07!7 | |ontology_enrichment_celltype=CL:0002605!1.25e-09!3;CL:0000242!2.50e-07!2;CL:0000128!5.61e-07!7;CL:0000126!5.61e-07!7;CL:0000127!5.61e-07!7;CL:0002453!5.61e-07!7 | ||
|ontology_enrichment_celltype_v019=CL:0000047;1.07e-13;2!CL:0000239;1.41e-09;3!CL:1000615;1.41e-09;3!CL:0002306;1.41e-09;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,2.34e-13,8;CL:0000239,1.19e-09,3;CL:1000615,1.19e-09,3;CL:0002306,1.19e-09,3 | |||
|ontology_enrichment_development_v019=UBERON:0003918;5.69e-11;10!UBERON:0007687;5.69e-11;10 | |||
|ontology_enrichment_disease=DOID:3493!7.79e-07!2 | |ontology_enrichment_disease=DOID:3493!7.79e-07!2 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000956!2.00e-44!25;UBERON:0000203!2.00e-44!25;UBERON:0001893!3.76e-42!34;UBERON:0001869!2.64e-41!32;UBERON:0001950!1.06e-40!20;UBERON:0002791!1.12e-39!33;UBERON:0002619!9.38e-37!22;UBERON:0002020!5.58e-35!34;UBERON:0003528!5.58e-35!34;UBERON:0002780!4.76e-34!41;UBERON:0001890!4.76e-34!41;UBERON:0006240!4.76e-34!41;UBERON:0003080!4.16e-33!42;UBERON:0001049!6.64e-23!57;UBERON:0005068!6.64e-23!57;UBERON:0006241!6.64e-23!57;UBERON:0007135!6.64e-23!57;UBERON:0001017!3.35e-22!82;UBERON:0002616!6.23e-22!59;UBERON:0000955!4.10e-21!69;UBERON:0006238!4.10e-21!69;UBERON:0003056!5.04e-21!61;UBERON:0005743!7.54e-21!86;UBERON:0001871!9.45e-19!7;UBERON:0000200!1.85e-18!6;UBERON:0000073!3.20e-18!94;UBERON:0001016!3.20e-18!94;UBERON:0003075!4.01e-16!86;UBERON:0007284!4.01e-16!86;UBERON:0002346!3.98e-15!90;UBERON:0002021!3.39e-11!5;UBERON:0002771!1.04e-09!3;UBERON:0004121!1.29e-09!169;UBERON:0000033!3.09e-09!123;UBERON:0000924!3.14e-09!173;UBERON:0006601!3.14e-09!173;UBERON:0007023!1.42e-08!115;UBERON:0000153!1.53e-08!129;UBERON:0007811!1.53e-08!129;UBERON:0001876!1.13e-07!2;UBERON:0000025!1.68e-07!194;UBERON:0001870!1.94e-07!2 | |ontology_enrichment_uberon=UBERON:0000956!2.00e-44!25;UBERON:0000203!2.00e-44!25;UBERON:0001893!3.76e-42!34;UBERON:0001869!2.64e-41!32;UBERON:0001950!1.06e-40!20;UBERON:0002791!1.12e-39!33;UBERON:0002619!9.38e-37!22;UBERON:0002020!5.58e-35!34;UBERON:0003528!5.58e-35!34;UBERON:0002780!4.76e-34!41;UBERON:0001890!4.76e-34!41;UBERON:0006240!4.76e-34!41;UBERON:0003080!4.16e-33!42;UBERON:0001049!6.64e-23!57;UBERON:0005068!6.64e-23!57;UBERON:0006241!6.64e-23!57;UBERON:0007135!6.64e-23!57;UBERON:0001017!3.35e-22!82;UBERON:0002616!6.23e-22!59;UBERON:0000955!4.10e-21!69;UBERON:0006238!4.10e-21!69;UBERON:0003056!5.04e-21!61;UBERON:0005743!7.54e-21!86;UBERON:0001871!9.45e-19!7;UBERON:0000200!1.85e-18!6;UBERON:0000073!3.20e-18!94;UBERON:0001016!3.20e-18!94;UBERON:0003075!4.01e-16!86;UBERON:0007284!4.01e-16!86;UBERON:0002346!3.98e-15!90;UBERON:0002021!3.39e-11!5;UBERON:0002771!1.04e-09!3;UBERON:0004121!1.29e-09!169;UBERON:0000033!3.09e-09!123;UBERON:0000924!3.14e-09!173;UBERON:0006601!3.14e-09!173;UBERON:0007023!1.42e-08!115;UBERON:0000153!1.53e-08!129;UBERON:0007811!1.53e-08!129;UBERON:0001876!1.13e-07!2;UBERON:0000025!1.68e-07!194;UBERON:0001870!1.94e-07!2 | ||
|ontology_enrichment_uberon_v019=UBERON:0002902;5.92e-26;1!UBERON:0009899;5.92e-26;1!UBERON:0002021;9.92e-21;5!UBERON:0002113;5.07e-10;24!UBERON:0011143;5.07e-10;24!UBERON:0006853;1.41e-09;3!UBERON:0007685;1.41e-09;3!UBERON:0004134;1.41e-09;3!UBERON:0002114;1.41e-09;2!UBERON:0000489;2.10e-08;29!UBERON:0006554;3.82e-08;30!UBERON:0001008;3.82e-08;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002902,1.26e-25,1;UBERON:0009899,1.26e-25,1;UBERON:0002021,1.34e-20,5;UBERON:0002114,1.10e-09,2;UBERON:0006853,1.19e-09,3;UBERON:0007685,1.19e-09,3;UBERON:0004134,1.19e-09,3;UBERON:0002113,2.67e-09,26;UBERON:0003918,2.67e-09,26;UBERON:0011143,2.67e-09,26;UBERON:0005095,2.67e-09,26;UBERON:0007687,2.67e-09,26;UBERON:0000489,6.69e-08,31 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.376627918784408,0.229240217243854,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,1.50764638800914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,1.66215201785745,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0.20453736500431,0.369254416383208,0,0,0,0,0,0,0,0,0.185536196323703,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0.91821828489147,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0.576361668616424,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.247247575143499,0.26961417541674,0,0,0,0,0,0,0,0,0,0.364497339948148,0,1.18208560948797,2.62272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.1251909307065,0,0,0,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0.957803154342908,0,0.756215088665154,1.1756732918917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.507326481551255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.243835849964539,0,0,0,0,0,0.397901550322736,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0.399764623699716,0,0,0,0,0,0,0,0.407948941145488,1.74540276136151,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0.136874425072884,0.376627918784408,0.229240217243854,0.164201178899891,0.157421562627358,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.392937226493138,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.132529768321485,0,0,0,0,0,0,0,0,0,0.118306800039844,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,1.50764638800914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254876273045038,1.66215201785745,0,0,0,0,0,0,0.103041011647722,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,0,0,0,0,0,0,0,0.994147647766298,0.422008249231538,0,0,0,0,0,0,0.20453736500431,0.369254416383208,0,0,0,0,0,0,0,0,0.185536196323703,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.123563938946503,0.104421949505455,0.134802265961354,0,0,0,0,0,0,0,0.91821828489147,0,0.150323419414493,0.207376382794494,0,0,0,0,0,0,0,0,0,0.34945333648406,0,0,0,0,0,0,0,0,0,0.316553979779393,0,0,0,0,0.576361668616424,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.236349546921671,0.247247575143499,0.26961417541674,0,0,0,0,0,0,0,0,0,0.364497339948148,0,1.18208560948797,2.62272940674991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.886068179966986,0.488105059607853,0.1251909307065,0,0,0,0,0,0,0,0,0.468334905806882,0.28984205722165,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0.179088841081487,0,0,0,0.192914038270915,0,0,0,0,0.276516872303462,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,1.41696576325585,0.957803154342908,0,0.756215088665154,1.1756732918917,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.337687923091973,0,0.413373593002368,0.507326481551255,0,0,0,0,0,0,0,0,0,0,0,0,0,0.526182188502793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196300467230486,0.243835849964539,0,0,0,0,0,0.397901550322736,0,0,0,0.150962843566674,0,0,0,0,0,0,0,0,0,0,0,0.399764623699716,0,0,0,0,0,0,0,0.407948941145488,1.74540276136151,0,0,0,0,0,0,0.380095503034311,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.320568492303233 | ||
|short_description=p5@EMX1 | |short_description=p5@EMX1 | ||
}} | }} |
Latest revision as of 08:50, 18 September 2015
Short description: | p5@EMX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_EMX1_5end |
Coexpression cluster: | C2705_kidney_brain_occipital_duodenum_Neurons_Renal_temporal |
Association with transcript: | 64bp_to_ENST00000258106, NM_004097, uc002sin.1_5end |
EntrezGene: | EMX1 |
HGNC: | 3340 |
UniProt: | Q04741 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
0.0
0.5
1.0
1.5
2.0
2.5
3.0
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data