FFCP PHASE1:Hg19::chr1:167599481..167599507,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr1:167599481..167599507,+ to FFCP PHASE1:Hg19::chr1:167599481..167599507,+: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=92241 | |EntrezGene=92241 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28310 | |HGNC=28310 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000461790,ENST00000472038,ENST00000475127_5end | |||
|cluster_id=chr1:167599481..167599507,+ | |||
|description=CAGE_peak_1_at_RCSD1_5end | |||
|id=chr1:167599481..167599507,+ | |||
|ontology_enrichment_celltype=CL:0000037!1.14e-65!172;CL:0000566!1.14e-65!172;CL:0000988!1.44e-62!182;CL:0002032!5.48e-61!165;CL:0000837!5.48e-61!165;CL:0000738!2.90e-52!140;CL:0002087!8.90e-46!119;CL:0002031!7.45e-43!124;CL:0000763!1.67e-30!112;CL:0000049!1.67e-30!112;CL:0000542!2.33e-28!53;CL:0000051!2.33e-28!53;CL:0000838!1.14e-27!52;CL:0000766!7.26e-21!76;CL:0000839!1.05e-16!70;CL:0000557!1.37e-16!71;CL:0002194!6.00e-16!63;CL:0000576!6.00e-16!63;CL:0000040!6.00e-16!63;CL:0000559!6.00e-16!63;CL:0002057!2.44e-15!42;CL:0002009!2.58e-15!65;CL:0000945!1.88e-14!24;CL:0000826!1.88e-14!24;CL:0000860!4.33e-13!45;CL:0000084!5.89e-13!25;CL:0000827!5.89e-13!25;CL:0000791!2.03e-11!18;CL:0000789!2.03e-11!18;CL:0002420!2.03e-11!18;CL:0002419!2.03e-11!18;CL:0000790!2.03e-11!18;CL:0000236!2.48e-11!14;CL:0000625!2.52e-07!11;CL:0000134!2.79e-07!358 | |||
|ontology_enrichment_celltype_v019=CL:0000542;2.23e-18;53!CL:0000945;1.14e-15;24!CL:0002087;2.53e-15;104!CL:0000084;4.14e-14;25!CL:0000738;8.53e-13;136!CL:0000576;1.08e-12;48!CL:0000988;1.49e-12;177!CL:0000791;2.55e-12;18!CL:0000789;2.55e-12;18!CL:0002419;2.55e-12;18!CL:0000763;3.91e-12;100!CL:0000236;6.47e-12;13!CL:0000766;1.74e-11;69!CL:0000473;8.36e-11;39!CL:0000234;8.36e-11;39!CL:0000860;8.71e-11;33!CL:0002057;8.71e-11;33!CL:0000625;7.36e-08;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.33e-76,168;CL:0000988,1.05e-72,177;CL:0002032,3.87e-71,161;CL:0000837,3.87e-71,161;CL:0000738,1.63e-61,136;CL:0002087,2.75e-54,115;CL:0002031,5.39e-51,120;CL:0000763,7.53e-37,108;CL:0000049,7.53e-37,108;CL:0000542,5.16e-31,53;CL:0000051,5.16e-31,53;CL:0000838,2.94e-30,52;CL:0000766,3.90e-26,72;CL:0000839,2.92e-21,66;CL:0000557,3.55e-21,67;CL:0002194,1.78e-20,59;CL:0000576,1.78e-20,59;CL:0000040,1.78e-20,59;CL:0000559,1.78e-20,59;CL:0002009,1.03e-19,61;CL:0000473,1.68e-18,48;CL:0000234,1.68e-18,48;CL:0000860,1.23e-16,42;CL:0002057,1.23e-16,42;CL:0000945,1.15e-15,24;CL:0000826,1.15e-15,24;CL:0000084,3.84e-14,25;CL:0000827,3.84e-14,25;CL:0000791,2.39e-12,18;CL:0000789,2.39e-12,18;CL:0002420,2.39e-12,18;CL:0002419,2.39e-12,18;CL:0000790,2.39e-12,18;CL:0000236,2.99e-12,14;CL:0000134,4.38e-09,354;CL:0002320,2.66e-08,361;CL:0000625,7.19e-08,11 | |||
|ontology_enrichment_development_v019=CL:0000051;2.23e-18;53!CL:0000790;2.55e-12;18!CL:0002057;3.53e-12;42!CL:0000049;5.67e-11;108 | |||
|ontology_enrichment_disease=DOID:2531!2.33e-16!51;DOID:0060083!2.33e-16!51;DOID:1240!3.53e-15!39;DOID:8692!4.28e-11!31 | |||
|ontology_enrichment_disease_v019=DOID:1240;4.85e-13;39!DOID:8692;6.80e-12;31!DOID:2531;8.89e-11;51!DOID:0060083;8.89e-11;51 | |||
|ontology_enrichment_disease_v019_2=DOID:2531,1.10e-17,51;DOID:0060083,1.10e-17,51;DOID:1240,1.46e-16,39;DOID:8692,4.37e-12,31 | |||
|ontology_enrichment_uberon=UBERON:0002390!4.32e-24!102;UBERON:0003061!4.32e-24!102;UBERON:0002193!7.13e-24!112;UBERON:0007023!1.30e-22!115;UBERON:0002371!3.59e-14!80;UBERON:0002405!2.85e-13!115;UBERON:0001474!1.82e-11!86;UBERON:0000178!6.62e-09!15;UBERON:0000179!6.62e-09!15;UBERON:0000463!6.62e-09!15;UBERON:0004765!2.06e-07!101;UBERON:0001434!2.06e-07!101 | |||
|ontology_enrichment_uberon_v019=UBERON:0000178;1.48e-09;15!UBERON:0000179;1.48e-09;15!UBERON:0000463;1.48e-09;15!UBERON:0007023;6.55e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,5.93e-29,98;UBERON:0003061,5.93e-29,98;UBERON:0002193,3.18e-27,108;UBERON:0007023,1.27e-24,114;UBERON:0002405,1.52e-19,93;UBERON:0002371,6.02e-18,76;UBERON:0001474,6.22e-15,82;UBERON:0004765,1.12e-11,90;UBERON:0000178,1.35e-09,15;UBERON:0000179,1.35e-09,15;UBERON:0000463,1.35e-09,15;UBERON:0001434,6.69e-09,100;UBERON:0003081,1.31e-07,203;UBERON:0002384,3.00e-07,371 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.672325146451775,0,0,0,0,0,0.313454721478088,0,0,0.125542639594803,12.2261449196722,14.5318043326404,12.9085681354434,56.2510915893933,30.706351847777,48.92189496788,0,0,0,66.2344564961579,42.6507697462265,69.5833041223588,67.0334444323572,53.9464563694681,72.6986416898104,45.9026722191845,47.288475238771,52.0302646621057,20.7919481454778,18.1380452970629,24.7435742411573,11.6214518452842,6.16751832032739,9.91060386864331,12.6584652621746,13.3203567395132,10.6417003449863,23.7874519708267,20.0100251910986,18.9597081232078,11.6710250516415,7.91427835167753,5.16864014223695,11.0190201253525,11.5534449747394,19.1801137739712,11.5447955065351,13.1646014030277,9.80316926225197,9.86711411337186,14.7520158419696,7.4738669879469,12.8136819280939,12.5155900420848,11.0766310799609,15.1349875658342,10.6800514436394,9.49387162322653,67.1791810471975,39.3317954935331,61.0106658429374,99.9724817203806,75.6891539921192,122.151445889781,41.0418350987398,41.971418889008,48.0406724400987,139.037033124445,114.142969753785,113.857184494535,87.479695626134,108.106916499723,110.352468471261,99.8177757905142,93.4972679444657,153.687501659551,101.004796571801,118.504700718821,39.6513985737078,7.28661131875997,48.7260556833893,48.9807327583444,49.5193561063948,67.848494669838,98.9744052712814,73.6584322591914,62.9685581627195,66.2410876586898,108.402374549274,86.6141367976021,99.4687186680459,102.905468230706,123.864306174728,107.429021084459,127.439376067849,129.331808323777,97.6636398927127,52.4934433593694,54.043247274122,60.6306038068865,107.53056621999,54.8005305850747,64.9455871962171,58.4475488565052,63.7130828648193,54.6910101239392,63.6802869780411,47.8828878667317,51.9625641286939,61.2160560106495,55.642654230344,60.7634717721574,47.5791914010369,38.7788283886086,55.467746687112,4.87613732627923,0,0.895037932904712,0,0,0,0,0,0,0,0.263504357079378,5.89405839739707,0,0,3.57002133020152,4.87563264437948,4.25465473660369,28.1418936680304,26.3117658958859,19.6872475704669,0,0,0,0,0,0,0,0.258416759169329,0.35576626268671,1.00416183829401,1.61131726843659,3.80136052859256,4.88124115096339,0,0,0.0892997282840798,0,0.225222960966644,0,0,0.366403487860815,50.076558625704,108.578473961531,0,0,0,0,0,1.41867352879343,0,1.06748995729705,0,0.933633106199299,0.942974704487816,3.75962377160955,0,0,0,0,0,0,0,0.161872944368132,0,0,0,0,0,0,0,0,0,0.250237039743928,0,0,0,0.150238058906597,0.453728732640084,0,0,0,0,0,0.257640540045629,0.18611685633159,0.168776332241266,0,0,0.0920498986422993,0,0,0,0,0,0,0,0,0.397589304964456,1.62671520017326,0.518305275076852,0,0,0,0.643240938192885,0,0.464367928031979,0,0,0,0,0,0,0,0,0,0,2.95262181849859,0,0,1.47008711385542,0,4.91413608338813,5.31710916013264,55.1828874268313,0,0,0,0,0,0,0,0,0,0,0,3.60916119402685,0.925971025153221,6.08813287150714,0,0,21.667096535691,2.34004265139238,10.9987060093659,0,0,0,0.53735113621709,0.581267877027924,0,0,7.39606845711099,24.4647176338111,22.338592779629,17.5476982462668,0,0,0,1.71072446022705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.355391948742546,0,0,0,0,35.2708963859452,27.624140028767,16.8667151586425,0,0,0,0.723906533337896,0.61642896765115,0.358121926479791,104.127098769987,46.6962901678567,37.087942875837,48.0002955686259,0,0,0,1.00509759200609,0,71.1556672749823,167.530417154254,79.1533630662828,0,0,0,0,0,0,0,0,0,2.0694614258501,0,0,0,0.195801157462741,2.40200396667599,80.2259941356803,70.9699720693249,82.5004021820625,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.131124414959424,0,0,0,0,0,4.54933536283586,0.340187410553031,4.75015015424707,4.62681758070868,0,0,0,0.831076008928724,0.223874754722178,3.50815802633495,3.92153176537351,0,0,0,8.96456801335184,0,0,0,0,0,0.193341436584244,0.924291702687866,1.07452572308291,3.44591431211326,0.107420244868274,0.725083469571143,2.98293195956353,2.31483292681517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.359744915166629,0,0,0,0,0,0.48763373908959,0,0,0,0,0,0,0,0,0,0,0,1.239293992399,0,0,0,0,0,0,0,0,0,0,0.670302275535787,0,7.43736026136555,0,0,0,0,64.4458463724855,66.5234370213867,82.0291949530794,78.3782541256126,74.4565714286012,57.0656513849591,45.9026721652398,95.1750211553125,0,0.962479855263359,0.490080431962063,86.9558859588363,146.721789597044,62.6759639899528,28.8561553639168,57.2792796012184,42.7056975395178,31.5393638258585,18.8280725359242,44.6467513200399,20.5411211129873,8.46071437174326,97.7474460651262,25.2244748924389,33.2417315464658,84.1504778986668,46.8430861459359,22.3278474091247,21.8140942659005,27.7358373786596,21.85723756426,49.0424119459121,39.8120828670197,14.7704878737255,0,1.33228787199128,1.4098700508785,0,9.23001529412932,0,37.4449771172327,0,0,4.15750553165694,0,1.9882952955326,6.89280140411512,0.111308705022906,0,0,11.1578873420599,62.4401649100394,0,0.102268682502155,11.6930565188016,0,0.449341755736634,0,70.0854147210814,9.37112353550869,122.136377096939,0,1.93866549219044,3.33965153382665,1.99613798001194,0,0,11.5999932069567,0,0,0,0,0,0.173624994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| ||
|short_description=p1@RCSD1 | |||
}} | }} |
Latest revision as of 11:30, 18 September 2015
Short description: | p1@RCSD1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RCSD1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000461790, ENST00000472038, ENST00000475127_5end |
EntrezGene: | RCSD1 |
HGNC: | 28310 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 5.93e-29 | 98 |
blood island | 5.93e-29 | 98 |
hemolymphoid system | 3.18e-27 | 108 |
adult organism | 1.27e-24 | 114 |
immune system | 1.52e-19 | 93 |
bone marrow | 6.02e-18 | 76 |
bone element | 6.22e-15 | 82 |
skeletal element | 1.12e-11 | 90 |
blood | 1.35e-09 | 15 |
haemolymphatic fluid | 1.35e-09 | 15 |
organism substance | 1.35e-09 | 15 |
skeletal system | 6.69e-09 | 100 |
lateral plate mesoderm | 1.31e-07 | 203 |
connective tissue | 3.00e-07 | 371 |
Ontology term | p-value | n |
---|---|---|
hematologic cancer | 1.10e-17 | 51 |
immune system cancer | 1.10e-17 | 51 |
leukemia | 1.46e-16 | 39 |
myeloid leukemia | 4.37e-12 | 31 |