FFCP PHASE1:Hg19::chr7:38357177..38357188,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=445347 | |EntrezGene=445347 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-240bp_to_uc003tgg.1,uc003tgh.1,uc003tgi.1,uc003tgj.1_5end | |association_with_transcript=-240bp_to_uc003tgg.1,uc003tgh.1,uc003tgi.1,uc003tgj.1_5end | ||
|cluster_id=chr7:38357177..38357188,- | |||
|coexpression_cluster_id=C1996 | |||
|description=CAGE_peak_8_at_TARP_5end | |description=CAGE_peak_8_at_TARP_5end | ||
|id=chr7:38357177..38357188,- | |id=chr7:38357177..38357188,- | ||
|ontology_enrichment_celltype=CL:0000625!1.33e-16!11;CL:0000791!3.83e-15!18;CL:0000789!3.83e-15!18;CL:0002420!3.83e-15!18;CL:0002419!3.83e-15!18;CL:0000790!3.83e-15!18;CL:0000084!1.68e-12!25;CL:0000827!1.68e-12!25;CL:0000037!8.65e-12!172;CL:0000566!8.65e-12!172;CL:0000988!1.14e-10!182;CL:0000623!2.81e-10!3;CL:0000825!2.81e-10!3;CL:0000842!3.17e-10!3;CL:0000767!6.69e-10!3;CL:0000738!2.66e-09!140;CL:0002032!6.07e-09!165;CL:0000837!6.07e-09!165;CL:0000838!2.97e-08!52;CL:0000542!4.90e-08!53;CL:0000051!4.90e-08!53;CL:0000224!9.54e-08!4;CL:0000893!2.22e-07!2;CL:0002489!2.22e-07!2;CL:0000809!2.22e-07!2;CL:0000808!2.22e-07!2;CL:0000894!2.22e-07!2;CL:0000806!2.22e-07!2;CL:0000807!2.22e-07!2;CL:0000805!2.22e-07!2;CL:0002425!2.22e-07!2;CL:0002087!2.22e-07!119 | |ontology_enrichment_celltype=CL:0000625!1.33e-16!11;CL:0000791!3.83e-15!18;CL:0000789!3.83e-15!18;CL:0002420!3.83e-15!18;CL:0002419!3.83e-15!18;CL:0000790!3.83e-15!18;CL:0000084!1.68e-12!25;CL:0000827!1.68e-12!25;CL:0000037!8.65e-12!172;CL:0000566!8.65e-12!172;CL:0000988!1.14e-10!182;CL:0000623!2.81e-10!3;CL:0000825!2.81e-10!3;CL:0000842!3.17e-10!3;CL:0000767!6.69e-10!3;CL:0000738!2.66e-09!140;CL:0002032!6.07e-09!165;CL:0000837!6.07e-09!165;CL:0000838!2.97e-08!52;CL:0000542!4.90e-08!53;CL:0000051!4.90e-08!53;CL:0000224!9.54e-08!4;CL:0000893!2.22e-07!2;CL:0002489!2.22e-07!2;CL:0000809!2.22e-07!2;CL:0000808!2.22e-07!2;CL:0000894!2.22e-07!2;CL:0000806!2.22e-07!2;CL:0000807!2.22e-07!2;CL:0000805!2.22e-07!2;CL:0002425!2.22e-07!2;CL:0002087!2.22e-07!119 | ||
|ontology_enrichment_celltype_v019=CL:0000623;2.75e-23;3!CL:0000791;8.62e-20;18!CL:0000789;8.62e-20;18!CL:0002419;8.62e-20;18!CL:0000084;3.93e-18;25!CL:0000625;4.59e-17;11!CL:0000226;2.07e-11;3!CL:0000842;2.07e-11;3!CL:0000767;6.94e-11;3!CL:0000542;6.01e-10;53!CL:0002127;4.88e-09;1!CL:0000911;4.88e-09;1!CL:0000814;4.88e-09;1!CL:0000895;7.74e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000623,2.86e-23,3;CL:0000825,2.86e-23,3;CL:0000791,1.01e-19,18;CL:0000789,1.01e-19,18;CL:0002420,1.01e-19,18;CL:0002419,1.01e-19,18;CL:0000790,1.01e-19,18;CL:0000084,4.90e-18,25;CL:0000827,4.90e-18,25;CL:0000625,5.00e-17,11;CL:0000893,4.65e-16,2;CL:0002489,4.65e-16,2;CL:0000809,4.65e-16,2;CL:0000808,4.65e-16,2;CL:0000894,4.65e-16,2;CL:0000806,4.65e-16,2;CL:0000807,4.65e-16,2;CL:0000805,4.65e-16,2;CL:0002425,4.65e-16,2;CL:0000838,1.71e-15,52;CL:0000542,3.63e-15,53;CL:0000051,3.63e-15,53;CL:0000738,1.60e-12,136;CL:0002087,1.16e-11,115;CL:0000226,2.07e-11,3;CL:0000842,2.07e-11,3;CL:0000037,6.44e-11,168;CL:0000767,7.67e-11,3;CL:0000988,3.41e-10,177;CL:0002127,4.89e-09,1;CL:0000914,4.89e-09,1;CL:0000911,4.89e-09,1;CL:0000814,4.89e-09,1;CL:0002042,4.89e-09,1;CL:0002039,4.89e-09,1;CL:0002040,4.89e-09,1;CL:0002041,4.89e-09,1;CL:0000810,9.74e-09,1;CL:0000895,9.74e-09,1;CL:0002436,9.74e-09,1;CL:0002427,9.74e-09,1;CL:0002428,9.74e-09,1;CL:0002429,9.74e-09,1;CL:0002433,9.74e-09,1;CL:0002431,9.74e-09,1;CL:0002432,9.74e-09,1;CL:0002032,1.05e-08,161;CL:0000837,1.05e-08,161;CL:0002031,5.47e-08,120 | |||
|ontology_enrichment_development_v019=CL:0000790;8.62e-20;18!CL:0002425;3.70e-16;2!CL:0000051;6.01e-10;53!CL:0002427;7.74e-09;1 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000178!5.54e-23!15;UBERON:0000179!5.54e-23!15;UBERON:0000463!5.54e-23!15;UBERON:0004177!1.28e-10!7;UBERON:0002390!2.19e-10!102;UBERON:0003061!2.19e-10!102;UBERON:0002193!7.39e-10!112;UBERON:0007023!7.61e-08!115;UBERON:0002370!1.69e-07!4;UBERON:0005058!1.69e-07!4;UBERON:0009113!1.69e-07!4;UBERON:0003295!1.69e-07!4;UBERON:0005562!1.69e-07!4 | |ontology_enrichment_uberon=UBERON:0000178!5.54e-23!15;UBERON:0000179!5.54e-23!15;UBERON:0000463!5.54e-23!15;UBERON:0004177!1.28e-10!7;UBERON:0002390!2.19e-10!102;UBERON:0003061!2.19e-10!102;UBERON:0002193!7.39e-10!112;UBERON:0007023!7.61e-08!115;UBERON:0002370!1.69e-07!4;UBERON:0005058!1.69e-07!4;UBERON:0009113!1.69e-07!4;UBERON:0003295!1.69e-07!4;UBERON:0005562!1.69e-07!4 | ||
|ontology_enrichment_uberon_v019=UBERON:0000178;9.64e-39;15!UBERON:0000179;9.64e-39;15!UBERON:0000463;9.64e-39;15!UBERON:0002390;2.02e-16;32!UBERON:0002193;9.93e-10;42 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000178,6.19e-39,15;UBERON:0000179,6.19e-39,15;UBERON:0000463,6.19e-39,15;UBERON:0002390,2.79e-10,98;UBERON:0003061,2.79e-10,98;UBERON:0002193,4.02e-09,108;UBERON:0002370,1.78e-08,4;UBERON:0005058,1.78e-08,4;UBERON:0009113,1.78e-08,4;UBERON:0003295,1.78e-08,4;UBERON:0005562,1.78e-08,4 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,3.0706351847777,0.928896739896456,0,0,0,0,0,0.587200878669695,0.553995408531877,1.00272223735071,1.30206522429511,0,0.971680998056939,0.257575567634187,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0.579606171470105,0,0,0,0.113309342697566,2.29932296161153,0,0.253019692019503,0.318565414324097,3.25541726928209,0,2.55977702432214,3.58362511232371,0,0.473554504088034,0,4.63695509416885,1.06976078313403,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36255431980582,3.74358444383662,4.9594342217689,1.02674429023799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,0.647142602455851,4.05564719653088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,1.52927441428475,0.569647187174163,2.85878130549347,2.87953591160336,0,1.08006287447623,1.58625035258854,0,0,0,0,0,0,0,2.59453182862662,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0.939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387533459016037,0,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.18009283054671,3.0706351847777,0.928896739896456,0,0,0,0,0,0.587200878669695,0.553995408531877,1.00272223735071,1.30206522429511,0,0.971680998056939,0.257575567634187,0,0,0,0,0,0,0,0.256160706529101,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.130059347559878,0.164437904603676,0,0.579606171470105,0,0,0,0.113309342697566,2.29932296161153,0,0.253019692019503,0.318565414324097,3.25541726928209,0,2.55977702432214,3.58362511232371,0,0.473554504088034,0,4.63695509416885,1.06976078313403,0.289648807765598,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12624243342638,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.36255431980582,3.74358444383662,4.9594342217689,1.02674429023799,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.9624326269493,0.647142602455851,4.05564719653088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.53723804616085,1.52927441428475,0.569647187174163,2.85878130549347,2.87953591160336,0,1.08006287447623,1.58625035258854,0,0,0,0,0,0,0,2.59453182862662,0,0.211673582723883,0,0,0,0.156679895773023,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.19924798825107,0.276283915531148,0,0,0,0,0,0,0,0.0986434056369336,2.3948309234694,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02193298195737,0.31396051279005,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,1.22206028986725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.213452994739353,0,0,0,0,0,0,0,0,0,0,0,0,0.136905378891993,0,0,0,0,0,0,0,0,0,0.0671834724867263,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,1.32506888912221,0,0,0,0,0.213574825135389,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.194860308839388,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0752103283492573,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.437119121007915,0,0,0,0,0,0,0,0.939839179798536,0.45120521581504,0,0,0,0,0,0,0,0,0.0679914901909147,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.387533459016037,0,0,0,0,0,0,0.134704106029175,0.0717222053926763,0,0,0,0,0,0,0.122241444182866,0,0,0,0 | ||
|short_description=p8@TARP | |short_description=p8@TARP | ||
}} | }} |
Latest revision as of 12:32, 18 September 2015
Short description: | p8@TARP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TARP_5end |
Coexpression cluster: | C1996_Natural_CD8_NK_CD4_Peripheral_blood_Whole |
Association with transcript: | -240bp_to_uc003tgg.1, uc003tgh.1, uc003tgi.1, uc003tgj.1_5end |
EntrezGene: | TARP |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
blood | 6.19e-39 | 15 |
haemolymphatic fluid | 6.19e-39 | 15 |
organism substance | 6.19e-39 | 15 |
hematopoietic system | 2.79e-10 | 98 |
blood island | 2.79e-10 | 98 |
hemolymphoid system | 4.02e-09 | 108 |
thymus | 1.78e-08 | 4 |
hemolymphoid system gland | 1.78e-08 | 4 |
thymic region | 1.78e-08 | 4 |
pharyngeal gland | 1.78e-08 | 4 |
thymus primordium | 1.78e-08 | 4 |