FFCP PHASE1:Hg19::chr15:64388166..64388216,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6642 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11172 | |||
|TSSclassifier=strong | |||
|UniProt=A6NKH4,Q13596 | |||
|association_with_transcript=0bp_to_ENST00000261889,ENST00000353874,ENST00000380285,ENST00000559844,ENST00000560260,ENST00000561026,uc002amv.2,uc002amw.2,uc002amx.2,uc002amy.2,uc010bgv.2,uc010bgw.2,uc010uio.1_5end | |||
|cluster_id=chr15:64388166..64388216,+ | |||
|description=CAGE_peak_1_at_SNX1_5end | |||
|id=chr15:64388166..64388216,+ | |||
|ontology_enrichment_celltype=CL:0002194!1.65e-14!63;CL:0000576!1.65e-14!63;CL:0000040!1.65e-14!63;CL:0000559!1.65e-14!63;CL:0000839!5.45e-14!70;CL:0000557!9.79e-14!71;CL:0002009!1.52e-13!65;CL:0000766!5.25e-13!76;CL:0002087!4.33e-11!119;CL:0000860!1.44e-10!45;CL:0002031!1.80e-10!124;CL:0000738!4.13e-10!140;CL:0002057!5.00e-10!42;CL:0000763!3.24e-08!112;CL:0000049!3.24e-08!112;CL:0000037!1.19e-07!172;CL:0000566!1.19e-07!172;CL:0002032!1.31e-07!165;CL:0000837!1.31e-07!165 | |||
|ontology_enrichment_celltype_v019=CL:0000473;8.90e-11;39!CL:0000234;8.90e-11;39!CL:0000860;2.49e-09;33!CL:0002057;2.49e-09;33!CL:0000576;4.31e-07;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0002194,3.59e-14,59;CL:0000576,3.59e-14,59;CL:0000040,3.59e-14,59;CL:0000559,3.59e-14,59;CL:0000839,1.29e-13,66;CL:0000557,2.35e-13,67;CL:0002009,3.50e-13,61;CL:0000473,3.94e-13,48;CL:0000234,3.94e-13,48;CL:0000766,1.32e-12,72;CL:0002087,1.18e-10,115;CL:0002031,4.85e-10,120;CL:0000860,5.00e-10,42;CL:0002057,5.00e-10,42;CL:0000738,1.10e-09,136;CL:0000763,8.22e-08,108;CL:0000049,8.22e-08,108;CL:0000037,2.84e-07,168;CL:0002032,3.14e-07,161;CL:0000837,3.14e-07,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.42e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!2.53e-31!115;UBERON:0002390!9.14e-12!102;UBERON:0003061!9.14e-12!102;UBERON:0002371!9.49e-12!80;UBERON:0002405!3.57e-11!115;UBERON:0002193!1.05e-10!112;UBERON:0001049!2.29e-10!57;UBERON:0005068!2.29e-10!57;UBERON:0006241!2.29e-10!57;UBERON:0007135!2.29e-10!57;UBERON:0004765!4.06e-10!101;UBERON:0001434!4.06e-10!101;UBERON:0001474!9.49e-10!86;UBERON:0002616!1.56e-08!59;UBERON:0003080!1.68e-08!42;UBERON:0002780!4.72e-08!41;UBERON:0001890!4.72e-08!41;UBERON:0006240!4.72e-08!41;UBERON:0000955!1.93e-07!69;UBERON:0006238!1.93e-07!69 | |||
|ontology_enrichment_uberon_v019=UBERON:0007023;4.98e-09;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,4.68e-31,114;UBERON:0002371,2.46e-11,76;UBERON:0002390,2.48e-11,98;UBERON:0003061,2.48e-11,98;UBERON:0002405,1.46e-10,93;UBERON:0002193,2.83e-10,108;UBERON:0001049,6.38e-10,56;UBERON:0005068,6.38e-10,56;UBERON:0006241,6.38e-10,56;UBERON:0007135,6.38e-10,56;UBERON:0001434,1.01e-09,100;UBERON:0001474,2.48e-09,82;UBERON:0004765,8.04e-09,90;UBERON:0000073,9.76e-09,53;UBERON:0002616,9.76e-09,53;UBERON:0002780,4.72e-08,41;UBERON:0001890,4.72e-08,41;UBERON:0003080,4.72e-08,41;UBERON:0006240,4.72e-08,41;UBERON:0000955,4.44e-07,68;UBERON:0006238,4.44e-07,68 | |||
|phase1_expression=67.7660354679176,74.2928817901712,68.362885986546,53.0388481271591,58.998864464402,61.0636966870258,50.6599756336621,69.4891860769514,104.474251279935,30.7167420626886,34.1922572306489,47.1833363801172,53.8084635586045,55.4473261261009,77.8783832960602,62.5262386200151,49.4209512979661,54.773256779053,60.5036670500229,47.8940915918705,50.796172119819,45.1374798928446,48.6601178122796,52.4229048029147,53.2300791881964,64.263674234027,71.6738145898026,70.9971247449387,46.8103489450196,52.2007981412209,45.3611241316103,52.4070097952988,57.831536405424,35.1266309658448,47.5648611563052,48.906215975673,47.8568716115801,60.9394949385065,48.5317562877743,52.9506524546678,224.811136136884,221.867161223001,233.363464276573,97.1260235047492,99.0034972464681,97.5187925975021,92.9716147622738,105.258979333587,85.1692519961535,94.9384894663096,89.9124079917143,67.870399978024,86.5311658648912,76.1671926628915,59.5876541015104,82.2619023801183,91.1506541193205,80.0015604624501,70.3992952453076,81.5159728773278,82.4744892280763,128.971858373006,120.276585545844,112.097109390099,64.4264509755456,91.9164063999646,84.0810036144026,110.29816404771,88.130613213014,80.3598725408932,67.1993447923039,57.4513112140601,57.9126169016819,70.7705209145005,81.8526554865418,73.7998432189483,85.9314028270688,84.6997675626096,94.0244682177919,77.5234662976196,79.367754202437,76.7189445811463,117.917483789086,108.135445029902,99.6250364327181,84.4925840681684,104.102956629363,96.5584099123532,96.5125514265899,105.899966753425,46.1062504978653,38.757654498482,33.6400440750201,21.1474125726441,43.7196679125598,58.7346509048422,66.2911925283617,55.4145175476322,58.8020287138596,55.0043569835331,61.273386127115,61.0747669397806,60.3962858064525,56.1508702701275,50.9668219931468,47.6297873354785,56.3272036631232,68.4007647335105,63.9891989994601,73.5037433578432,65.4949542152461,61.1484510900961,61.390637149093,57.2537372111986,55.4038276166377,61.9802104555687,53.2676486106671,64.2583323052518,55.9173519363101,75.5000031948109,63.806178477929,65.5811910669378,71.3726064428643,68.216863745305,91.1994303832125,68.9021803448089,73.9015197228942,48.5872251171605,58.8368430723716,58.0745859570024,199.921630377449,55.6681713554018,53.0629631650651,65.4204865816065,67.1792800252092,56.7798354326429,36.5831535643506,49.6367567708689,54.5465895036672,49.4456556341518,47.5186190599812,81.0760477330841,23.6791937390152,40.7862887062872,127.871673099945,141.393346687005,133.356834400422,59.8611467006408,62.3474452750339,63.147775226026,60.0262470247449,61.936890847641,67.3452573118733,62.1838736116411,71.7344035918939,56.949434681594,51.6217567345922,64.3457730331629,62.2590959701743,59.914989684876,59.6187389321538,56.2601358231699,70.7779966889692,53.6788097304968,85.8750464754665,56.5267280038225,77.9116923012809,73.6479082360927,58.2603222370356,38.9198920422933,59.9069702652432,54.0299711487859,46.533631697799,36.6319003799729,52.6790268797038,42.6744824309634,66.6018179490491,51.0569184932888,55.3282676229437,57.7497928146576,28.8222288470203,45.1401613603403,66.59916157555,63.3140158727534,58.8462851208451,71.7434207036975,73.1743424089599,28.821536115557,53.6915332148151,51.9129357605449,59.6300235401686,52.3757863951191,59.7311164718405,64.7478218897366,60.8379430339582,55.3982771076074,67.3684093265991,85.5362057243079,78.8781504398596,37.3166158394591,28.0261075308333,49.4908175024955,58.6805858199512,49.8715407871529,76.8210836541466,73.5570709917647,79.6261712204963,44.8057123482083,50.9466565356368,49.9724289835448,54.4664985980074,40.2122068753099,61.9345700723018,53.3315917894452,51.9266029165136,52.1518866625513,54.2724118747876,61.846274689808,64.7110787455364,66.7598214661693,46.8612662121931,52.08883478369,42.7292692622429,64.1626032502145,60.2768926505745,76.290022373475,26.5902679362518,29.9517276406557,27.3055765743368,41.2570998961174,31.2877855085779,31.0230755214455,42.2413737290503,61.751130066517,59.3980161815666,56.6528872199014,62.0816354235844,65.7785808221532,72.4914167335837,64.3499449788897,65.6249137757744,62.749279898613,63.825796540885,81.5729414368995,70.6397274451246,55.4035906002802,75.2918563717141,25.2435192846202,48.5657333371052,38.2222649602409,134.360336911141,79.6090045508877,117.567191429599,60.0389815203925,35.9126240545892,41.6909779025417,53.4483889940006,38.2165961075906,50.1639572334038,41.9425656568139,31.2775973097912,46.797065337581,30.3095818253074,44.2854147004793,59.4087992833258,57.7465791044295,53.2433339463102,55.1737041480335,61.6359430408235,68.6788929675898,176.783810370751,115.598106978783,110.878847067391,56.2403003920662,54.7621737928282,51.7479104934711,55.2576085076574,56.3829840717086,74.376239758051,59.6122517854092,71.5833768527528,55.1492787338454,72.0599767084807,66.4035199822759,61.0214764147744,53.4783795781589,70.3304683260282,65.007529488628,55.629673552498,85.2974284276726,56.3078072282239,44.8524337381443,62.7782499119923,43.7829566351072,40.2035036006689,2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| |||
|short_description=p1@SNX1 | |||
}} |
Latest revision as of 13:10, 18 September 2015
Short description: | p1@SNX1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SNX1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000261889, ENST00000353874, ENST00000380285, ENST00000559844, ENST00000560260, ENST00000561026, uc002amv.2, uc002amw.2, uc002amx.2, uc002amy.2, uc010bgv.2, uc010bgw.2, uc010uio.1_5end |
EntrezGene: | SNX1 |
HGNC: | 11172 |
UniProt: | A6NKH4Q13596 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
monopoietic cell | 3.59e-14 | 59 |
monocyte | 3.59e-14 | 59 |
monoblast | 3.59e-14 | 59 |
promonocyte | 3.59e-14 | 59 |
myeloid lineage restricted progenitor cell | 1.29e-13 | 66 |
granulocyte monocyte progenitor cell | 2.35e-13 | 67 |
macrophage dendritic cell progenitor | 3.50e-13 | 61 |
defensive cell | 3.94e-13 | 48 |
phagocyte | 3.94e-13 | 48 |
myeloid leukocyte | 1.32e-12 | 72 |
nongranular leukocyte | 1.18e-10 | 115 |
hematopoietic lineage restricted progenitor cell | 4.85e-10 | 120 |
classical monocyte | 5.00e-10 | 42 |
CD14-positive, CD16-negative classical monocyte | 5.00e-10 | 42 |
leukocyte | 1.10e-09 | 136 |
myeloid cell | 8.22e-08 | 108 |
common myeloid progenitor | 8.22e-08 | 108 |
hematopoietic stem cell | 2.84e-07 | 168 |
hematopoietic oligopotent progenitor cell | 3.14e-07 | 161 |
hematopoietic multipotent progenitor cell | 3.14e-07 | 161 |
Ontology term | p-value | n |
---|---|---|
adult organism | 4.68e-31 | 114 |
bone marrow | 2.46e-11 | 76 |
hematopoietic system | 2.48e-11 | 98 |
blood island | 2.48e-11 | 98 |
immune system | 1.46e-10 | 93 |
hemolymphoid system | 2.83e-10 | 108 |
neural tube | 6.38e-10 | 56 |
neural rod | 6.38e-10 | 56 |
future spinal cord | 6.38e-10 | 56 |
neural keel | 6.38e-10 | 56 |
skeletal system | 1.01e-09 | 100 |
bone element | 2.48e-09 | 82 |
skeletal element | 8.04e-09 | 90 |
regional part of nervous system | 9.76e-09 | 53 |
regional part of brain | 9.76e-09 | 53 |
regional part of forebrain | 4.72e-08 | 41 |
forebrain | 4.72e-08 | 41 |
anterior neural tube | 4.72e-08 | 41 |
future forebrain | 4.72e-08 | 41 |
brain | 4.44e-07 | 68 |
future brain | 4.44e-07 | 68 |