FFCP PHASE1:Hg19::chr17:8339340..8339360,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr17:8339340..8339360,+
|short_description=p4@NDEL1
|description=CAGE_peak_4_at_NDEL1_5end
|association_with_transcript=149bp_to_ENST00000334527_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=81565 | |EntrezGene=81565 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17620 | |HGNC=17620 | ||
|TSSclassifier=strong | |||
|UniProt=Q9GZM8 | |UniProt=Q9GZM8 | ||
|association_with_transcript=149bp_to_ENST00000334527_5end | |||
|cluster_id=chr17:8339340..8339360,+ | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_4_at_NDEL1_5end | |||
|id=chr17:8339340..8339360,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.12e-08!42;CL:0000738!2.35e-08!140;CL:0000860!4.93e-08!45;CL:0000037!1.48e-07!172;CL:0000566!1.48e-07!172;CL:0000988!6.26e-07!182;CL:0002087!8.36e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000624;5.56e-10;6!CL:0002393;1.55e-08;6!CL:0002397;1.55e-08;6!CL:0000791;2.34e-08;18!CL:0000789;2.34e-08;18!CL:0002419;2.34e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.73e-13,136;CL:0000037,7.06e-11,168;CL:0000988,4.95e-10,177;CL:0000624,6.28e-10,6;CL:0002087,2.49e-09,115;CL:0002031,3.06e-09,120;CL:0002393,3.25e-09,9;CL:0002397,3.25e-09,9;CL:0002032,6.87e-09,161;CL:0000837,6.87e-09,161;CL:0000791,1.81e-08,18;CL:0000789,1.81e-08,18;CL:0002420,1.81e-08,18;CL:0002419,1.81e-08,18;CL:0000790,1.81e-08,18;CL:0000860,3.36e-07,42;CL:0002057,3.36e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000790;2.34e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!4.39e-13!34;UBERON:0001869!5.41e-13!32;UBERON:0003080!7.82e-13!42;UBERON:0002780!1.10e-12!41;UBERON:0001890!1.10e-12!41;UBERON:0006240!1.10e-12!41;UBERON:0002791!1.40e-12!33;UBERON:0002020!1.68e-12!34;UBERON:0003528!1.68e-12!34;UBERON:0002619!4.97e-12!22;UBERON:0001950!3.03e-11!20;UBERON:0000956!9.18e-10!25;UBERON:0000203!9.18e-10!25;UBERON:0002616!1.48e-09!59;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0000955!3.65e-09!69;UBERON:0006238!3.65e-09!69;UBERON:0001017!1.56e-07!82;UBERON:0000073!1.93e-07!94;UBERON:0001016!1.93e-07!94;UBERON:0005743!4.17e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-21;32!UBERON:0002619;1.38e-21;22!UBERON:0001950;4.73e-20;20!UBERON:0002791;5.11e-20;32!UBERON:0001893;4.82e-19;34!UBERON:0000956;2.93e-18;25!UBERON:0000203;2.93e-18;25!UBERON:0003528;3.33e-18;34!UBERON:0002020;3.33e-18;34!UBERON:0002780;3.11e-14;41!UBERON:0001890;3.11e-14;41!UBERON:0001871;1.17e-08;6!UBERON:0000200;4.13e-08;6!UBERON:0000073;2.12e-07;53!UBERON:0002616;2.12e-07;53!UBERON:0000955;4.75e-07;68!UBERON:0002420;5.48e-07;9!UBERON:0007245;5.48e-07;9!UBERON:0010009;5.48e-07;9!UBERON:0010011;5.48e-07;9!UBERON:0000454;5.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.97e-24,32;UBERON:0001893,1.76e-22,34;UBERON:0002791,2.10e-22,32;UBERON:0002619,3.81e-22,22;UBERON:0003528,1.35e-20,34;UBERON:0002020,1.35e-20,34;UBERON:0001950,1.58e-20,20;UBERON:0002780,3.18e-20,41;UBERON:0001890,3.18e-20,41;UBERON:0003080,3.18e-20,41;UBERON:0006240,3.18e-20,41;UBERON:0000956,9.64e-19,25;UBERON:0000203,9.64e-19,25;UBERON:0000073,1.40e-13,53;UBERON:0002616,1.40e-13,53;UBERON:0001049,2.20e-12,56;UBERON:0005068,2.20e-12,56;UBERON:0006241,2.20e-12,56;UBERON:0007135,2.20e-12,56;UBERON:0000955,1.05e-11,68;UBERON:0006238,1.05e-11,68;UBERON:0003056,1.62e-11,61;UBERON:0001017,8.27e-10,81;UBERON:0001871,1.07e-08,6;UBERON:0001016,1.76e-08,89;UBERON:0000200,3.92e-08,6;UBERON:0002420,3.08e-07,9;UBERON:0007245,3.08e-07,9;UBERON:0010009,3.08e-07,9;UBERON:0010011,3.08e-07,9;UBERON:0000454,3.08e-07,9;UBERON:0002390,5.39e-07,98;UBERON:0003061,5.39e-07,98;UBERON:0001872,6.68e-07,5 | |||
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| ||
|short_description=p4@NDEL1 | |||
}} | }} |
Latest revision as of 15:43, 18 September 2015
Short description: | p4@NDEL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NDEL1_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | 149bp_to_ENST00000334527_5end |
EntrezGene: | NDEL1 |
HGNC: | 17620 |
UniProt: | Q9GZM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.73e-13 | 136 |
hematopoietic stem cell | 7.06e-11 | 168 |
hematopoietic cell | 4.95e-10 | 177 |
CD4-positive, alpha-beta T cell | 6.28e-10 | 6 |
nongranular leukocyte | 2.49e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 3.06e-09 | 120 |
intermediate monocyte | 3.25e-09 | 9 |
CD14-positive, CD16-positive monocyte | 3.25e-09 | 9 |
hematopoietic oligopotent progenitor cell | 6.87e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.87e-09 | 161 |
mature alpha-beta T cell | 1.81e-08 | 18 |
alpha-beta T cell | 1.81e-08 | 18 |
immature T cell | 1.81e-08 | 18 |
mature T cell | 1.81e-08 | 18 |
immature alpha-beta T cell | 1.81e-08 | 18 |
classical monocyte | 3.36e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.36e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.97e-24 | 32 |
telencephalon | 1.76e-22 | 34 |
regional part of telencephalon | 2.10e-22 | 32 |
regional part of cerebral cortex | 3.81e-22 | 22 |
brain grey matter | 1.35e-20 | 34 |
gray matter | 1.35e-20 | 34 |
neocortex | 1.58e-20 | 20 |
regional part of forebrain | 3.18e-20 | 41 |
forebrain | 3.18e-20 | 41 |
anterior neural tube | 3.18e-20 | 41 |
future forebrain | 3.18e-20 | 41 |
cerebral cortex | 9.64e-19 | 25 |
pallium | 9.64e-19 | 25 |
regional part of nervous system | 1.40e-13 | 53 |
regional part of brain | 1.40e-13 | 53 |
neural tube | 2.20e-12 | 56 |
neural rod | 2.20e-12 | 56 |
future spinal cord | 2.20e-12 | 56 |
neural keel | 2.20e-12 | 56 |
brain | 1.05e-11 | 68 |
future brain | 1.05e-11 | 68 |
pre-chordal neural plate | 1.62e-11 | 61 |
central nervous system | 8.27e-10 | 81 |
temporal lobe | 1.07e-08 | 6 |
nervous system | 1.76e-08 | 89 |
gyrus | 3.92e-08 | 6 |
basal ganglion | 3.08e-07 | 9 |
nuclear complex of neuraxis | 3.08e-07 | 9 |
aggregate regional part of brain | 3.08e-07 | 9 |
collection of basal ganglia | 3.08e-07 | 9 |
cerebral subcortex | 3.08e-07 | 9 |
hematopoietic system | 5.39e-07 | 98 |
blood island | 5.39e-07 | 98 |
parietal lobe | 6.68e-07 | 5 |