FFCP PHASE1:Hg19::chr17:8339340..8339360,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(2 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=81565 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17620 | |||
|TSSclassifier=strong | |||
|UniProt=Q9GZM8 | |||
|association_with_transcript=149bp_to_ENST00000334527_5end | |||
|cluster_id=chr17:8339340..8339360,+ | |||
|coexpression_cluster_id=C22 | |||
|description=CAGE_peak_4_at_NDEL1_5end | |||
|id=chr17:8339340..8339360,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.12e-08!42;CL:0000738!2.35e-08!140;CL:0000860!4.93e-08!45;CL:0000037!1.48e-07!172;CL:0000566!1.48e-07!172;CL:0000988!6.26e-07!182;CL:0002087!8.36e-07!119 | |||
|ontology_enrichment_celltype_v019=CL:0000624;5.56e-10;6!CL:0002393;1.55e-08;6!CL:0002397;1.55e-08;6!CL:0000791;2.34e-08;18!CL:0000789;2.34e-08;18!CL:0002419;2.34e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000738,7.73e-13,136;CL:0000037,7.06e-11,168;CL:0000988,4.95e-10,177;CL:0000624,6.28e-10,6;CL:0002087,2.49e-09,115;CL:0002031,3.06e-09,120;CL:0002393,3.25e-09,9;CL:0002397,3.25e-09,9;CL:0002032,6.87e-09,161;CL:0000837,6.87e-09,161;CL:0000791,1.81e-08,18;CL:0000789,1.81e-08,18;CL:0002420,1.81e-08,18;CL:0002419,1.81e-08,18;CL:0000790,1.81e-08,18;CL:0000860,3.36e-07,42;CL:0002057,3.36e-07,42 | |||
|ontology_enrichment_development_v019=CL:0000790;2.34e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001893!4.39e-13!34;UBERON:0001869!5.41e-13!32;UBERON:0003080!7.82e-13!42;UBERON:0002780!1.10e-12!41;UBERON:0001890!1.10e-12!41;UBERON:0006240!1.10e-12!41;UBERON:0002791!1.40e-12!33;UBERON:0002020!1.68e-12!34;UBERON:0003528!1.68e-12!34;UBERON:0002619!4.97e-12!22;UBERON:0001950!3.03e-11!20;UBERON:0000956!9.18e-10!25;UBERON:0000203!9.18e-10!25;UBERON:0002616!1.48e-09!59;UBERON:0001049!1.58e-09!57;UBERON:0005068!1.58e-09!57;UBERON:0006241!1.58e-09!57;UBERON:0007135!1.58e-09!57;UBERON:0000955!3.65e-09!69;UBERON:0006238!3.65e-09!69;UBERON:0001017!1.56e-07!82;UBERON:0000073!1.93e-07!94;UBERON:0001016!1.93e-07!94;UBERON:0005743!4.17e-07!86 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;1.23e-21;32!UBERON:0002619;1.38e-21;22!UBERON:0001950;4.73e-20;20!UBERON:0002791;5.11e-20;32!UBERON:0001893;4.82e-19;34!UBERON:0000956;2.93e-18;25!UBERON:0000203;2.93e-18;25!UBERON:0003528;3.33e-18;34!UBERON:0002020;3.33e-18;34!UBERON:0002780;3.11e-14;41!UBERON:0001890;3.11e-14;41!UBERON:0001871;1.17e-08;6!UBERON:0000200;4.13e-08;6!UBERON:0000073;2.12e-07;53!UBERON:0002616;2.12e-07;53!UBERON:0000955;4.75e-07;68!UBERON:0002420;5.48e-07;9!UBERON:0007245;5.48e-07;9!UBERON:0010009;5.48e-07;9!UBERON:0010011;5.48e-07;9!UBERON:0000454;5.48e-07;9 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001869,1.97e-24,32;UBERON:0001893,1.76e-22,34;UBERON:0002791,2.10e-22,32;UBERON:0002619,3.81e-22,22;UBERON:0003528,1.35e-20,34;UBERON:0002020,1.35e-20,34;UBERON:0001950,1.58e-20,20;UBERON:0002780,3.18e-20,41;UBERON:0001890,3.18e-20,41;UBERON:0003080,3.18e-20,41;UBERON:0006240,3.18e-20,41;UBERON:0000956,9.64e-19,25;UBERON:0000203,9.64e-19,25;UBERON:0000073,1.40e-13,53;UBERON:0002616,1.40e-13,53;UBERON:0001049,2.20e-12,56;UBERON:0005068,2.20e-12,56;UBERON:0006241,2.20e-12,56;UBERON:0007135,2.20e-12,56;UBERON:0000955,1.05e-11,68;UBERON:0006238,1.05e-11,68;UBERON:0003056,1.62e-11,61;UBERON:0001017,8.27e-10,81;UBERON:0001871,1.07e-08,6;UBERON:0001016,1.76e-08,89;UBERON:0000200,3.92e-08,6;UBERON:0002420,3.08e-07,9;UBERON:0007245,3.08e-07,9;UBERON:0010009,3.08e-07,9;UBERON:0010011,3.08e-07,9;UBERON:0000454,3.08e-07,9;UBERON:0002390,5.39e-07,98;UBERON:0003061,5.39e-07,98;UBERON:0001872,6.68e-07,5 | |||
|phase1_expression=0.726713517082227,1.2846031433459,0.845726424575827,2.00146596706261,0.446961094427288,0,0,0.631719873426831,0.783556884599516,0,0,1.31064823278103,0,0.74259811776028,0.331397375727916,0.672325146451775,1.20538905604795,1.46062018077475,0,0,0.204000691244253,0,0,0.547497700291537,0,0.0764134057479513,0.164201178899891,0.236132343941038,3.93364276848904,1.53531759238885,1.54816123316076,0,0,0,1.00707360754392,0.284338464974843,1.17440175733939,4.43196326825502,2.60707781711184,4.12320654360118,0,0,0,0.581592955118259,0,0.727752183563449,0,0.411167888021826,1.54853185447552,0.28769239232215,0.512321413058201,1.18241114944293,0.689491361473237,1.29096936716765,2.70852973188684,0.188242339542605,1.36453075028923,2.24723484445085,0.918251677112708,0.641858054152187,2.55734850319616,0.329851300186716,0.598390972864896,0.852449501065388,0.870627715885752,0,0.622822248995575,1.00499466102697,0.521482918420201,1.52032191293582,0.605399502633369,0.368277635987565,0.949387162322653,2.11255286311942,2.12604299965044,2.72556239160889,8.98629049171961,2.4028302854641,2.57160938715328,3.42015292489498,1.79025009479181,0.730656615058536,0,0,0,0,0.400395987036012,0.574752439954483,0,0.954053754535364,1.1384259382189,2.93618594685469,3.05818582500183,0,1.68152568894461,0.526768169550154,9.24535919535015,9.43225830597995,18.7097364089553,0,13.3628129319772,12.3096429491031,13.6378709885538,0.779873198196215,5.00830042707223,3.98761010250518,2.97884250141517,0,0.650296737799391,0,0.276350017785848,0.579606171470105,3.55887751588945,3.74557159325598,4.18142095219907,0.226618685395132,8.04763036564035,8.24705869158312,4.04831507231205,0.637130828648193,0.651083453856419,1.90090408889675,0.451725357233318,0.255973222308837,0,0.236777252044017,0,10.2819439044614,10.4301676355568,8.97911304073354,0,0.670700859703636,0.511450247374121,0,0.50133791063589,0.144846518960824,0,0.973269740605272,0.0945348171640679,0,0.351339142772504,0.523916301990851,0,0,0,0,0,0,1.71598473234038,0.74291500265913,0.39752481473341,0,0.347140501607594,1.13061588384802,0.419499436209906,0.550236083880135,0,0.516833518338658,0.35576626268671,0,0,0,0,0.367663080345869,0,0.0892997282840798,0.22452937262617,0,1.53316637465883,0,0.183201743930407,0,0,0,0.993943903390637,0.506522046658319,1.19168262731897,0.860509862246441,0.709336764396714,0.560677600142307,0,0.74000264525148,0,0.538842688278752,0.326923806226917,0.605429710579726,0,0,0,0.570471821544449,0,0.117434498643765,0.323745888736263,0,0,0.245668634623536,0.206651562351531,0,0.741800787835671,0.910161361938026,0,0.168336113954066,0.125118519871964,0.277064115484183,0.438977620880838,0,0.300476117813194,0.340296549480063,0.717558542755448,0,1.05965950579781,0.300091096084402,0.618315175430633,2.31876486041066,0.930584281657949,1.0126579934476,0.487185025805993,1.51460264546469,1.10459878370759,1.61646056818812,0.355009592516614,0.302256294682921,0.339121184620975,0.193260853163297,0.818238361772504,1.43402297694502,0.487894824518382,0.265059536642971,0.232387885739037,0.414644220061482,0,0,1.56449532329816,0,0,0.464367928031979,1.44375896333917,0.236613600079688,0.168584690078102,0,0.220587945464788,0.217879444092406,0.71181185733329,0.404493924480493,0,0,0,0,0.4115740113314,0,0,0,1.77236972004421,0.882926198829301,0.614942192715568,0.171567810298526,0.548751427043128,0,0.301586917234893,0.185176890317059,0,0,0,0,0.352226082707465,0.144366447761074,0,0,0,1.71697232418975,0,0.468008530278475,0.445893486866185,0.93733833986777,1.00789276919316,0,0.268675568108545,0.290633938513962,0.383382679165211,0,0.528290604079356,4.76854665743776,4.03535869567492,4.16600030307054,0.317489471460845,0,0,0,0,0.600686115687835,0.285826432630578,0.448524337381443,0.87192013766656,0.22001485746285,0,0,0,0.26593811658487,0,0.257207374262142,0,0.532844358032199,0.57191197463259,2.17048642156577,0,0,0,0,0.904318131178758,0,0.399891964728228,0,0,0,0,0,0,0.723906533337896,0,0.537182889719687,2.35378802386407,8.27529192848094,8.84073056924021,11.0375011200584,0,0,0.773288812777695,0.167516265334349,0,5.24304916763028,0,5.38740167466846,0.36807447515742,0.500170521059677,0.271265023699736,1.45579603071565,1.07057393278297,0.157702415033935,0.585707074963566,0,0,1.03473071292505,0,0.921845842708516,0.347534457872331,0.195801157462741,0.686286847621712,2.89475236572042,4.74571241800957,3.20182673410333,0.606255142892519,0,0.30239029332968,0.496215615637554,1.38115775959256,1.12264037773229,0.768834895534206,0.511707249066704,0.965123526861645,0,0.771048469013278,0.532685175939381,0.410635780069046,0,0.464841513839837,0,0.200506470303285,0,0.229628896329213,0.728364672026868,0.262248829918848,0,0.231046011313244,0,0,0.105551628892876,0,0.170093705276516,0,0,0.270946437543853,0,0,0,0.223874754722178,0,0.261435451024901,0.256450125116389,0.656029291399411,0,1.33953315142039,0.640986253728404,0.082509499920588,0,0,3.21367859688319,0.096670718292122,0.154048617114644,0.15350367472613,0.137836572484531,0.214840489736547,0.290033387828457,0.426133137080504,0.623224249527161,0.165284915360978,0,0.510450849978337,0,0.929691098594572,1.88887408098384,0,0.308033580176089,1.06461206063404,0,0.18532421910392,0.286249773483982,0.372158369359667,0.316379424718726,0.38126038784765,0,0,0.318203247925937,0.78494864019923,0.179872457583315,0.274537029736055,0.235624804691373,0.202182481573316,0,0.421258456238981,0.48763373908959,0.243713489631284,0,0.545999645631943,0.565621727814851,0,0,0.66343897524122,0.438450885253763,0,0,0,0.30982349809975,1.12678241012897,0,0,0.35667105148125,0,0.422215270595328,0.329294892959902,0,0.349934720244983,0.192444225451024,0,0,1.60044461320525,0,0,0,0,1.01489521846434,0,0.569647187174163,0,0.411362273086194,1.94541993357815,1.08006287447623,0.79312517629427,0.427296284509893,0,0.245040215981032,0.371606350251437,0.865615277858669,0.284567373393656,0.478278818186467,0,1.1490322207942,0.211673582723883,0.324621940274555,0,0.456469358066384,0.313359791546046,2.50634477090067,0.50787533340481,0.1605880751037,0.403599414382095,0.851692475380653,0.687010689511529,0,0,0.166849141711909,0.390776190804081,0.278406173895242,0,0,1.33228787199128,1.4098700508785,0.748562161632879,0.439524537815682,0,0.66866030566487,0.568272293612826,1.19372242368845,0,1.53580351049616,2.98244294329889,2.2507106625682,0.333926115068718,0.16480387422676,2.53350489753592,1.39473591775749,0.552567831062295,0.503865495708552,0.20453736500431,1.10776324914963,0.622079175323615,0.269605053441981,0,0.511572370226872,0.197286811273867,0,0,3.87733098438087,1.20598527610407,0,0.260427761085233,0.174919999992391,0.724999575434793,0.341380344856499,0.254253650292766,0.472775363535873,0.344743373241465,0.291604613383254,0.173624994933292,4.42870692906919,5.42683973814336,0,0.221158519862449,0.886642856860642,1.75508317723178,0.544692317594951,1.11538995422883,0.307801034015188,0.341826167541004,0.23056390438806,0.179515288819544,0,0.638002319463839,0.0915975934018623,0,1.02193298195737,0.156980256395025,0.166211681900156,0.225595660617181,0.19606253431774,0.167821586975843,0.189753732724185,0.476809736941136,0,0.652931232636591,0.141353071433941,0.216388639742091,0,0.530745387020035,0.611030144933625,1.18608451472249,0.494255755786011,0.626531697032732,0.67401132980677,0,1.87411556580271,0.91227394607833,0,0.485560759068186,0.789168805698781,1.20990716048664,2.44858209304392,0.189559738885464,1.05226393590145,0.72581733978073,0.664653872707185,0,0,1.19472429772959,0,0,0.347119476670262,0.783939179315021,0.34823682632161,0.52418000472609,0,0.387025325156341,0.219267951258557,0.246346371159628,0.0969890164884194,0.176512253383001,0,0.274083849293502,0.19871461170299,1.83601308272048,0.782205530939212,0.0801588202515337,0.426905989478705,0.599428828746391,0,0.114536596165916,0,0.720273989940749,0,1.17847017308398,0.815425236441684,0.313808538937,1.01998217636322,1.44475294950759,1.80126086612937,0.547621515567972,2.55493176133945,0,0.525774708558629,0.558564802544508,0.687481272035051,0,0.199679000498991,0,0,0.335917362433631,0.360299883542404,1.16495949527454,0.236349546921671,0.659326867049332,0.606631894687664,0.196854963029498,0.846733320657845,1.59045937961861,1.22583065500418,0.643012593860077,0.275078873194468,1.24632101408756,0.449947783103001,8.51182150013745,2.55148137963704,0.335434687599266,0.236417121897595,0.209818352539992,0.316801009558219,0.179287339332845,0.575745591958336,0,0,0.5085370753095,0,0.864221491201268,0.653174720218818,1.19730191562487,0.656740165994712,0.851940108927109,0.566560457600628,0.293104467356165,0,0.387848869084652,0.92562821219883,0.171086837884329,0,0.106787412567695,0.943225830597996,0.414239055347196,0,0.197611631897944,0.730755590285376,0.638341257770182,2.72008901684737,1.2534494701135,1.53172788381731,0.327872630709804,0.314108192500469,4.43034089983493,3.17268288745104,2.1282458220105,0.573409195690071,0.221858103073705,0.745156835296601,0.138348634936231,0,0.303298235083296,0,0,0.468334905806882,0.579684114443301,0.298509605773748,1.40227985908335,0,1.7046270474758,0.50313580350515,0.889811221596536,0.457680136793847,0.756154618816195,0.15543720058278,0.443565449968902,0.318593534327405,0.899606224327209,0.310525913752519,0,0.265841714557995,0.521745061811734,0.450772826991655,0.761610424337591,0,0.363697318405119,0.214821114084977,0,0.796191777397232,0.400027764663154,0,0,0,0.192619830407303,0,0,0.226705925512272,1.15761237161917,0.489473409012935,0,0.617602894321944,0.657852148736121,0,0.964570191354574,0.168942440653073,0,1.38172136692479,0.303859956177382,1.52084279766904,0,0.132864840313363,0.163565394255844,0,0,0.211312123358627,0.19998739585493,0.106691729694141,0,1.13503190713367,0.184105950251841,0.139879507719444,0,0.511577485214607,0.754773679776773,1.10086159299127,0.327628914576042,0.169732529954025,0.425149840203366,0.619678821295011,0.558644917973244,0.954013051960256,0.630893960010027,0,0.705351887381368,0,2.95454435443714,1.41696576325585,0.478901577171454,1.23069818544453,2.26864526599546,2.07471757392654,1.45328081068666,0,0.490738592505128,0.471878893390961,0.183428598521679,0.346576998451015,0.381382095467167,0.690359926060101,2.98374333174412,0.526472298444801,0.40341013740704,0,0,1.14640342257068,0.443568258651136,2.29627787702542,3.90539049306924,1.86018116851066,2.34638497717455,1.64092442705466,0.548257766857182,0.496211178389294,0.879356221798103,0.255524855279191,0,0,0.606965604236632,0.91064876540519,0.266107110487916,0.230467975111559,0.171488009437418,0.951576261675644,2.63091094251396,0.118193840883968,0,0.313972371402056,3.45654297815204,1.40136081656895,1.82631744101899,0.431855182437243,0,0.357382720883282,0.316027223465453,0.348724276104376,0,0,0.207216164163037,0.17071847709395,2.07377898544228,0,0.591660003652827,0.340853619036631,0.423387050190929,0,0.31020638566432,0,0.335566295393377,0.392600934460972,0.609589624911347,0,0.205325613712494,0,1.45713297917742,0.467878926924211,0.397901550322736,0,0.11294608203896,0.109940516745429,0.150962843566674,0.385870790539723,0,0.940634592723046,0.490296643507811,0,0.392616934229891,0.297046400327086,0,0,0,0.128915775947154,0,0.178553938605658,0.352894871715692,0.0802413666891683,1.46067277649303,0,0.573358332605805,0.788857810965923,2.37970215668201,0.872701380680755,0.5290268405154,0.743990036333503,0.924351257262837,0,0.883164973845552,0.218531143927391,0.253397002022874,0.305966489225945,0.26721740526556,0.36757959813938,0,0.151557396436479,0.267964130156178,1.65833887891756,0.930896962757057,0,0,0.0645889098360061,0.372448285775147,0.560659312903067,0.25458863311266,0.404234377916439,1.30630048738177,0.684466602170562,0.202056159043763,0.358611026963382,0.332660356546013,0.162806537221949,0,0,0.359300808426348,0,0.733448665097199,2.03448089157869,0,0.201273793591026,0.320568492303233 | |||
|short_description=p4@NDEL1 | |||
}} |
Latest revision as of 15:43, 18 September 2015
Short description: | p4@NDEL1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NDEL1_5end |
Coexpression cluster: | C22_CD4_CD8_Natural_Basophils_CD14_Peripheral_CD19 |
Association with transcript: | 149bp_to_ENST00000334527_5end |
EntrezGene: | NDEL1 |
HGNC: | 17620 |
UniProt: | Q9GZM8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
leukocyte | 7.73e-13 | 136 |
hematopoietic stem cell | 7.06e-11 | 168 |
hematopoietic cell | 4.95e-10 | 177 |
CD4-positive, alpha-beta T cell | 6.28e-10 | 6 |
nongranular leukocyte | 2.49e-09 | 115 |
hematopoietic lineage restricted progenitor cell | 3.06e-09 | 120 |
intermediate monocyte | 3.25e-09 | 9 |
CD14-positive, CD16-positive monocyte | 3.25e-09 | 9 |
hematopoietic oligopotent progenitor cell | 6.87e-09 | 161 |
hematopoietic multipotent progenitor cell | 6.87e-09 | 161 |
mature alpha-beta T cell | 1.81e-08 | 18 |
alpha-beta T cell | 1.81e-08 | 18 |
immature T cell | 1.81e-08 | 18 |
mature T cell | 1.81e-08 | 18 |
immature alpha-beta T cell | 1.81e-08 | 18 |
classical monocyte | 3.36e-07 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.36e-07 | 42 |
Ontology term | p-value | n |
---|---|---|
cerebral hemisphere | 1.97e-24 | 32 |
telencephalon | 1.76e-22 | 34 |
regional part of telencephalon | 2.10e-22 | 32 |
regional part of cerebral cortex | 3.81e-22 | 22 |
brain grey matter | 1.35e-20 | 34 |
gray matter | 1.35e-20 | 34 |
neocortex | 1.58e-20 | 20 |
regional part of forebrain | 3.18e-20 | 41 |
forebrain | 3.18e-20 | 41 |
anterior neural tube | 3.18e-20 | 41 |
future forebrain | 3.18e-20 | 41 |
cerebral cortex | 9.64e-19 | 25 |
pallium | 9.64e-19 | 25 |
regional part of nervous system | 1.40e-13 | 53 |
regional part of brain | 1.40e-13 | 53 |
neural tube | 2.20e-12 | 56 |
neural rod | 2.20e-12 | 56 |
future spinal cord | 2.20e-12 | 56 |
neural keel | 2.20e-12 | 56 |
brain | 1.05e-11 | 68 |
future brain | 1.05e-11 | 68 |
pre-chordal neural plate | 1.62e-11 | 61 |
central nervous system | 8.27e-10 | 81 |
temporal lobe | 1.07e-08 | 6 |
nervous system | 1.76e-08 | 89 |
gyrus | 3.92e-08 | 6 |
basal ganglion | 3.08e-07 | 9 |
nuclear complex of neuraxis | 3.08e-07 | 9 |
aggregate regional part of brain | 3.08e-07 | 9 |
collection of basal ganglia | 3.08e-07 | 9 |
cerebral subcortex | 3.08e-07 | 9 |
hematopoietic system | 5.39e-07 | 98 |
blood island | 5.39e-07 | 98 |
parietal lobe | 6.68e-07 | 5 |