FFCP PHASE1:Hg19::chr11:613613..613620,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:613613..613620,- to FFCP PHASE1:Hg19::chr11:613613..613620,-: NSchange) |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3665 | |EntrezGene=3665 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6122 | |HGNC=6122 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-22bp_to_ENST00000531912_5end | |||
|cluster_id=chr11:613613..613620,- | |||
|description=CAGE_peak_3_at_IRF7_5end | |||
|id=chr11:613613..613620,- | |||
|ontology_enrichment_celltype=CL:0002057!2.65e-28!42;CL:0000860!7.69e-26!45;CL:0002194!2.72e-17!63;CL:0000576!2.72e-17!63;CL:0000040!2.72e-17!63;CL:0000559!2.72e-17!63;CL:0002009!1.63e-16!65;CL:0000766!1.89e-15!76;CL:0000839!9.11e-15!70;CL:0000557!1.90e-14!71;CL:0000738!3.61e-13!140;CL:0002087!3.83e-13!119;CL:0000988!1.52e-11!182;CL:0000037!1.03e-10!172;CL:0000566!1.03e-10!172;CL:0000763!3.35e-10!112;CL:0000049!3.35e-10!112;CL:0002031!8.50e-10!124;CL:0002032!4.35e-08!165;CL:0000837!4.35e-08!165;CL:0000784!8.98e-08!3 | |||
|ontology_enrichment_celltype_v019=CL:0000784;4.55e-33;3!CL:0000860;1.08e-09;33!CL:0002057;1.08e-09;33!CL:0000451;1.86e-09;10!CL:0000473;1.25e-08;39!CL:0000234;1.25e-08;39!CL:0000182;2.28e-08;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000784,4.82e-33,3;CL:0000451,1.89e-09,10;CL:0000860,1.99e-08,42;CL:0002057,1.99e-08,42;CL:0000182,2.17e-08,12;CL:0002194,8.42e-08,59;CL:0000576,8.42e-08,59;CL:0000040,8.42e-08,59;CL:0000559,8.42e-08,59;CL:0002009,1.58e-07,61;CL:0000473,2.54e-07,48;CL:0000234,2.54e-07,48;CL:0000839,6.49e-07,66;CL:0000557,8.40e-07,67 | |||
|ontology_enrichment_development_v019=UBERON:0005425;9.60e-12;1!CL:0002057;9.93e-07;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!3.16e-13!115;UBERON:0002371!3.98e-13!80;UBERON:0002390!8.84e-13!102;UBERON:0003061!8.84e-13!102;UBERON:0001474!1.40e-12!86;UBERON:0002193!1.85e-12!112;UBERON:0004765!2.40e-10!101;UBERON:0001434!2.40e-10!101;UBERON:0002204!2.69e-07!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0000941;9.60e-12;1!UBERON:0001785;9.60e-12;1!UBERON:0002464;9.60e-12;1!UBERON:0004904;9.60e-12;1!UBERON:0002426;9.60e-12;1!UBERON:0003831;9.60e-12;1!UBERON:0003898;9.60e-12;1!UBERON:0004830;9.60e-12;1!UBERON:0001021;9.60e-12;1!UBERON:0003830;9.60e-12;1!UBERON:0005175;9.60e-12;1!UBERON:0001774;9.60e-12;1!UBERON:0001103;9.60e-12;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002426,6.97e-12,1;UBERON:0003831,6.97e-12,1;UBERON:0003898,6.97e-12,1;UBERON:0004830,6.97e-12,1;UBERON:0003830,6.97e-12,1;UBERON:0005175,6.97e-12,1;UBERON:0001774,6.97e-12,1;UBERON:0001103,6.97e-12,1;UBERON:0010084,6.97e-12,1;UBERON:0000941,8.64e-12,1;UBERON:0001785,8.64e-12,1;UBERON:0002464,8.64e-12,1;UBERON:0004904,8.64e-12,1;UBERON:0001021,8.64e-12,1;UBERON:0003902,8.64e-12,1;UBERON:0005425,8.64e-12,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,1.1507695692886,1.0246428261164,0.47296445977717,0,0,0,0.941211697713023,0.818718450173537,0.224723484445085,0.612167784741805,0.641858054152187,0,0,0.797854630486527,1.27867425159808,1.16083695451434,0.56738522469114,0,1.25624332628372,1.5644487552606,0.868755378820466,0.605399502633369,0.368277635987565,0.632924774881769,0.422510572623884,0.637812899895131,0,0.22465726229299,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0,0,0,0.411202997999018,0,0,0.473447805734733,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,6.20075623193889,3.43196946468077,4.45749001595478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,1.96565443335525,1.18157981336281,0,0.245976877086227,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588187602953219,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,0.60129367765797,0.103688191397247,0,0.330991955875499,0.627865836814451,0,0,0.277349346026277,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,2.14441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.73732298598512,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0.205325613712494,3.4794432940146,0.485710993059139,0,0,0,0,0.109940516745429,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,1.60778478093707,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.786728553697808,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0.377875943688809,0,0.464858073811369,0.411167888021826,0.309706370895104,1.1507695692886,1.0246428261164,0.47296445977717,0,0,0,0.941211697713023,0.818718450173537,0.224723484445085,0.612167784741805,0.641858054152187,0,0,0.797854630486527,1.27867425159808,1.16083695451434,0.56738522469114,0,1.25624332628372,1.5644487552606,0.868755378820466,0.605399502633369,0.368277635987565,0.632924774881769,0.422510572623884,0.637812899895131,0,0.22465726229299,0,0,0.285012743741249,0.19891667719909,0,0,0,0,0,0,0,0,0,0.569212969109448,0,0.382273228125229,0,0,0,0,0,0.411202997999018,0,0,0.473447805734733,0,0.111410456885174,0,0,0,0,0.130059347559878,0,0,0,0.296573126324121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0,0,0,0,0,0,0,0,0,0,0,0,0.261958150995425,0,0,0,0,0,6.20075623193889,3.43196946468077,4.45749001595478,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,1.96565443335525,1.18157981336281,0,0.245976877086227,0,0,0,0.100528972411631,0.0925884451585296,0,0,0,0,0,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.07333828582095,0,0,0,0,0,0,0,0,0,0.542621605391443,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215627574859517,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0.343143423810856,0.206768026122887,0.431428401637234,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.231046011313244,0,0,0,0,0,0,0,0.270946437543853,0,0,0,0,0,0,0,0,0,0.103041011647722,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.202182481573316,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196498082026242,0,0,0.211107635297664,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68426486367398,0,0,0,0,0.23874448473769,0,0,0,0,0,0,0,0.19924798825107,0,0.251932747854276,0,0,0,0,0.537063524026827,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.588187602953219,0.167821586975843,0,0,0,0,0,0,0,0,0,0,0,0,0,1.60515529459758,0,0,0,0,0,0,0,0,0.60129367765797,0.103688191397247,0,0.330991955875499,0.627865836814451,0,0,0.277349346026277,0,0,0,0,0.343972064943233,0,0,0,0,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0.14405479798815,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0846733320657845,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0,0,0,0,0.106787412567695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,2.14441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.247871528518004,0,0,0.0788617450012534,0,0,0,0,0,0,0,0,0,0,1.42769420259154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.73732298598512,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243835849964539,0,0.205325613712494,3.4794432940146,0.485710993059139,0,0,0,0,0.109940516745429,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0.0644578879735772,0.0999411559249289,0,0,0.0802413666891683,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378893491091197,1.60778478093707,0,0,0.213233981900981,0,0,0,0,0,0,0,0,0.0673520530145875,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p3@IRF7 | |||
}} | }} |
Latest revision as of 16:27, 18 September 2015
Short description: | p3@IRF7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_IRF7_5end |
Coexpression cluster: | NA |
Association with transcript: | -22bp_to_ENST00000531912_5end |
EntrezGene: | IRF7 |
HGNC: | 6122 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
plasmacytoid dendritic cell | 4.82e-33 | 3 |
dendritic cell | 1.89e-09 | 10 |
classical monocyte | 1.99e-08 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.99e-08 | 42 |
hepatocyte | 2.17e-08 | 12 |
monopoietic cell | 8.42e-08 | 59 |
monocyte | 8.42e-08 | 59 |
monoblast | 8.42e-08 | 59 |
promonocyte | 8.42e-08 | 59 |
macrophage dendritic cell progenitor | 1.58e-07 | 61 |
defensive cell | 2.54e-07 | 48 |
phagocyte | 2.54e-07 | 48 |
myeloid lineage restricted progenitor cell | 6.49e-07 | 66 |
granulocyte monocyte progenitor cell | 8.40e-07 | 67 |
Ontology term | p-value | n |
---|---|---|
chest muscle | 6.97e-12 | 1 |
respiratory system muscle | 6.97e-12 | 1 |
skeletal muscle of trunk | 6.97e-12 | 1 |
respiratory system skeletal muscle | 6.97e-12 | 1 |
thoracic segment muscle | 6.97e-12 | 1 |
chest organ | 6.97e-12 | 1 |
muscle of trunk | 6.97e-12 | 1 |
diaphragm | 6.97e-12 | 1 |
future diaphragm | 6.97e-12 | 1 |
cranial nerve II | 8.64e-12 | 1 |
cranial nerve | 8.64e-12 | 1 |
nerve trunk | 8.64e-12 | 1 |
nerve connecting eye with brain | 8.64e-12 | 1 |
nerve | 8.64e-12 | 1 |
retinal neural layer | 8.64e-12 | 1 |
presumptive neural retina | 8.64e-12 | 1 |