FFCP PHASE1:Hg19::chr12:52400719..52400736,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:52400719..52400736,+
|short_description=p1@GRASP
|description=CAGE_peak_1_at_GRASP_5end
|association_with_transcript=0bp_to_ENST00000293662_5end
|EntrezG...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=160622 | |EntrezGene=160622 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18707 | |HGNC=18707 | ||
|TSSclassifier=strong | |||
|UniProt=Q7Z6J2 | |UniProt=Q7Z6J2 | ||
|association_with_transcript=0bp_to_ENST00000293662_5end | |||
|cluster_id=chr12:52400719..52400736,+ | |||
|coexpression_cluster_id=C2211 | |||
|description=CAGE_peak_1_at_GRASP_5end | |||
|id=chr12:52400719..52400736,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.53e-21!42;CL:0000738!3.47e-19!140;CL:0000860!2.05e-18!45;CL:0000766!1.40e-15!76;CL:0000557!5.35e-14!71;CL:0002009!7.26e-12!65;CL:0002031!8.40e-12!124;CL:0002087!1.05e-11!119;CL:0000839!3.59e-11!70;CL:0002194!6.88e-11!63;CL:0000576!6.88e-11!63;CL:0000040!6.88e-11!63;CL:0000559!6.88e-11!63;CL:0000037!1.57e-10!172;CL:0000566!1.57e-10!172;CL:0000115!2.30e-10!35;CL:0002139!1.15e-09!24;CL:0000988!1.45e-09!182;CL:0002032!1.48e-08!165;CL:0000837!1.48e-08!165;CL:0000071!5.91e-08!18;CL:0002546!5.91e-08!18;CL:0000763!1.69e-07!112;CL:0000049!1.69e-07!112 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.22e-15;33!CL:0002057;1.22e-15;33!CL:0000576;5.70e-12;48!CL:0000473;2.70e-10;39!CL:0000234;2.70e-10;39!CL:0002139;6.73e-10;24!CL:0000115;2.31e-09;36!CL:0000766;2.46e-09;69!CL:0000071;3.82e-08;18 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,4.45e-22,42;CL:0002057,4.45e-22,42;CL:0000738,7.37e-22,136;CL:0000766,2.71e-18,72;CL:0000473,6.15e-18,48;CL:0000234,6.15e-18,48;CL:0000557,1.32e-16,67;CL:0002009,2.73e-14,61;CL:0002031,5.82e-14,120;CL:0002087,9.63e-14,115;CL:0000839,1.41e-13,66;CL:0002194,3.33e-13,59;CL:0000576,3.33e-13,59;CL:0000040,3.33e-13,59;CL:0000559,3.33e-13,59;CL:0000037,1.39e-12,168;CL:0000988,3.89e-11,177;CL:0000115,9.97e-11,36;CL:0002032,2.25e-10,161;CL:0000837,2.25e-10,161;CL:0002139,7.00e-10,24;CL:0000763,3.23e-09,108;CL:0000049,3.23e-09,108;CL:0000071,3.98e-08,18;CL:0002546,3.98e-08,18;CL:0002078,9.17e-07,45 | |||
|ontology_enrichment_development_v019=CL:0002057;6.17e-16;42!CL:0002546;3.82e-08;18 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!3.95e-23!115;UBERON:0003081!3.53e-13!216;UBERON:0002193!9.13e-12!112;UBERON:0002405!1.17e-10!115;UBERON:0002390!4.47e-10!102;UBERON:0003061!4.47e-10!102;UBERON:0002371!7.28e-10!80;UBERON:0001474!2.94e-09!86;UBERON:0001049!1.24e-08!57;UBERON:0005068!1.24e-08!57;UBERON:0006241!1.24e-08!57;UBERON:0007135!1.24e-08!57;UBERON:0002616!3.55e-08!59;UBERON:0001986!5.91e-08!18;UBERON:0004638!5.91e-08!18;UBERON:0004852!5.91e-08!18;UBERON:0001009!1.38e-07!113;UBERON:0003080!2.39e-07!42;UBERON:0002780!5.04e-07!41;UBERON:0001890!5.04e-07!41;UBERON:0006240!5.04e-07!41;UBERON:0004535!5.49e-07!110;UBERON:0001893!9.42e-07!34 | |||
|ontology_enrichment_uberon_v019=UBERON:0004638;3.82e-08;18!UBERON:0001986;3.82e-08;18!UBERON:0004852;3.82e-08;18!UBERON:0007023;9.99e-07;114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007023,1.18e-23,114;UBERON:0003081,7.61e-16,203;UBERON:0002405,2.34e-14,93;UBERON:0002193,9.10e-14,108;UBERON:0002371,5.41e-12,76;UBERON:0002390,5.91e-12,98;UBERON:0003061,5.91e-12,98;UBERON:0001474,2.74e-11,82;UBERON:0000926,4.06e-09,315;UBERON:0004120,4.06e-09,315;UBERON:0006603,4.06e-09,315;UBERON:0004765,1.19e-08,90;UBERON:0001049,3.59e-08,56;UBERON:0005068,3.59e-08,56;UBERON:0006241,3.59e-08,56;UBERON:0007135,3.59e-08,56;UBERON:0004638,3.98e-08,18;UBERON:0001986,3.98e-08,18;UBERON:0004852,3.98e-08,18;UBERON:0000073,1.16e-07,53;UBERON:0002616,1.16e-07,53;UBERON:0001009,1.21e-07,112;UBERON:0004535,4.99e-07,109;UBERON:0001434,7.16e-07,100;UBERON:0002780,7.85e-07,41;UBERON:0001890,7.85e-07,41;UBERON:0003080,7.85e-07,41;UBERON:0006240,7.85e-07,41 | |||
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| ||
|short_description=p1@GRASP | |||
}} | }} |
Latest revision as of 20:53, 18 September 2015
Short description: | p1@GRASP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRASP_5end |
Coexpression cluster: | C2211_Mast_CD19_CD34_Dendritic_immature_Peripheral_CD14 |
Association with transcript: | 0bp_to_ENST00000293662_5end |
EntrezGene: | GRASP |
HGNC: | 18707 |
UniProt: | Q7Z6J2 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 4.45e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.45e-22 | 42 |
leukocyte | 7.37e-22 | 136 |
myeloid leukocyte | 2.71e-18 | 72 |
defensive cell | 6.15e-18 | 48 |
phagocyte | 6.15e-18 | 48 |
granulocyte monocyte progenitor cell | 1.32e-16 | 67 |
macrophage dendritic cell progenitor | 2.73e-14 | 61 |
hematopoietic lineage restricted progenitor cell | 5.82e-14 | 120 |
nongranular leukocyte | 9.63e-14 | 115 |
myeloid lineage restricted progenitor cell | 1.41e-13 | 66 |
monopoietic cell | 3.33e-13 | 59 |
monocyte | 3.33e-13 | 59 |
monoblast | 3.33e-13 | 59 |
promonocyte | 3.33e-13 | 59 |
hematopoietic stem cell | 1.39e-12 | 168 |
hematopoietic cell | 3.89e-11 | 177 |
endothelial cell | 9.97e-11 | 36 |
hematopoietic oligopotent progenitor cell | 2.25e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.25e-10 | 161 |
endothelial cell of vascular tree | 7.00e-10 | 24 |
myeloid cell | 3.23e-09 | 108 |
common myeloid progenitor | 3.23e-09 | 108 |
blood vessel endothelial cell | 3.98e-08 | 18 |
embryonic blood vessel endothelial progenitor cell | 3.98e-08 | 18 |
meso-epithelial cell | 9.17e-07 | 45 |
Ontology term | p-value | n |
---|---|---|
adult organism | 1.18e-23 | 114 |
lateral plate mesoderm | 7.61e-16 | 203 |
immune system | 2.34e-14 | 93 |
hemolymphoid system | 9.10e-14 | 108 |
bone marrow | 5.41e-12 | 76 |
hematopoietic system | 5.91e-12 | 98 |
blood island | 5.91e-12 | 98 |
bone element | 2.74e-11 | 82 |
mesoderm | 4.06e-09 | 315 |
mesoderm-derived structure | 4.06e-09 | 315 |
presumptive mesoderm | 4.06e-09 | 315 |
skeletal element | 1.19e-08 | 90 |
neural tube | 3.59e-08 | 56 |
neural rod | 3.59e-08 | 56 |
future spinal cord | 3.59e-08 | 56 |
neural keel | 3.59e-08 | 56 |
blood vessel endothelium | 3.98e-08 | 18 |
endothelium | 3.98e-08 | 18 |
cardiovascular system endothelium | 3.98e-08 | 18 |
regional part of nervous system | 1.16e-07 | 53 |
regional part of brain | 1.16e-07 | 53 |
circulatory system | 1.21e-07 | 112 |
cardiovascular system | 4.99e-07 | 109 |
skeletal system | 7.16e-07 | 100 |
regional part of forebrain | 7.85e-07 | 41 |
forebrain | 7.85e-07 | 41 |
anterior neural tube | 7.85e-07 | 41 |
future forebrain | 7.85e-07 | 41 |