FFCP PHASE1:Hg19::chr12:52448213..52448262,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52448213..52448262,+ to FFCP PHASE1:Hg19::chr12:52448213..52448262,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3164 | |EntrezGene=3164 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=7980 | |HGNC=7980 | ||
|TSSclassifier=strong | |||
|UniProt=Q53Y00,Q6IBU8 | |UniProt=Q53Y00,Q6IBU8 | ||
|association_with_transcript=100bp_to_AB307717,AB464647,AB590255,BT007144,CR456704,CU677577,DQ891134,DQ894313,HQ692855_5end | |||
|cluster_id=chr12:52448213..52448262,+ | |||
|coexpression_cluster_id=C1018 | |||
|description=CAGE_peak_6_at_NR4A1_5end | |||
|id=chr12:52448213..52448262,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.19e-18!45;CL:0002057!3.77e-18!42;CL:0000557!7.80e-13!71;CL:0000839!6.35e-12!70;CL:0000766!4.44e-11!76;CL:0002009!6.94e-11!65;CL:0002194!6.94e-10!63;CL:0000576!6.94e-10!63;CL:0000040!6.94e-10!63;CL:0000559!6.94e-10!63;CL:0000738!2.48e-07!140;CL:0002031!6.06e-07!124 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.41e-22;33!CL:0002057;8.41e-22;33!CL:0000473;3.00e-14;39!CL:0000234;3.00e-14;39!CL:0000576;3.65e-11;48!CL:0000766;1.09e-08;69!CL:0000097;8.80e-08;5 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.02e-20,42;CL:0002057,2.02e-20,42;CL:0000557,4.36e-18,67;CL:0000473,5.62e-17,48;CL:0000234,5.62e-17,48;CL:0000839,1.27e-15,66;CL:0000766,8.05e-15,72;CL:0002009,3.76e-14,61;CL:0002194,3.25e-12,59;CL:0000576,3.25e-12,59;CL:0000040,3.25e-12,59;CL:0000559,3.25e-12,59;CL:0002031,2.64e-09,120;CL:0000738,3.34e-09,136;CL:0000763,6.76e-09,108;CL:0000049,6.76e-09,108;CL:0000097,8.80e-08,5;CL:0002028,8.80e-08,5;CL:0002087,9.84e-07,115 | |||
|ontology_enrichment_development_v019=CL:0002057;5.70e-15;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!1.28e-10!80;UBERON:0007023!5.24e-10!115;UBERON:0002390!9.17e-10!102;UBERON:0003061!9.17e-10!102;UBERON:0001474!1.92e-09!86;UBERON:0004765!5.67e-09!101;UBERON:0001434!5.67e-09!101;UBERON:0002193!1.29e-07!112;UBERON:0000062!2.58e-07!511;UBERON:0002405!9.90e-07!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0006947;8.95e-07;3!UBERON:0004054;8.95e-07;3 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,4.48e-16,76;UBERON:0001474,1.43e-15,82;UBERON:0002390,1.39e-14,98;UBERON:0003061,1.39e-14,98;UBERON:0004765,2.11e-13,90;UBERON:0001434,3.49e-13,100;UBERON:0002193,2.36e-12,108;UBERON:0002405,1.37e-11,93;UBERON:0003081,1.68e-08,203;UBERON:0002204,9.94e-08,167;UBERON:0000926,2.24e-07,315;UBERON:0004120,2.24e-07,315;UBERON:0006603,2.24e-07,315;UBERON:0007023,4.27e-07,114 | |||
|phase1_expression=0.363356758541113,0.642301571672949,0.563817616383885,0,0,0,0,0,0,0,0,0,0,0.37129905888014,0,0,0,0,0.487932798790507,0.123121058076788,0,0,0,0,0,0.152826811495903,0,0,0.393364276848904,0.383829398097213,1.39334510984468,0,0,0,0,0.142169232487422,0,0.553995408531877,0.802177789880567,0.651032612147555,0,0,0,0,0,0,3.25400651667958,3.70051099219643,4.33588919253145,1.7261543539329,2.30544635876191,1.18241114944293,3.44745680736619,5.16387746867061,4.06279459783025,3.38836211176688,4.09359225086769,2.47195832889593,12.2433556948361,4.8139354061414,12.7867425159808,0,0.398927315243264,0.852449501065388,0.870627715885752,1.70215567407342,2.4912889959823,0.75374599577023,2.60741459210101,2.6062661364614,0.605399502633369,1.10483290796269,0.316462387440884,1.47878700418359,3.18906449947565,0.838634582033504,1.23561494261145,1.05123824989054,0.16072558669708,0.285012743741249,0.99458338599545,0.182664153764634,0,0,0,0.426730222566507,0,0,0,0,0,2.34894875748376,1.52909291250092,1.32171328579026,1.12101712596307,0.263384084775077,0,0.393010762749165,0,0,0.32592226663359,0,0,0.111410456885174,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.201606743224732,0,0.144824403882799,0,0,0,0,0.50133791063589,2.75208386025565,0,0.486634870302636,0,0,0.527008714158756,0.458426764241994,0,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12663051166458,0.264818361626438,0.286836620748814,0.709336764396714,0,0,0,0,0,0,0,0,0,0,0,0,0,0.323745888736263,0,0.408308342509787,0.122834317311768,0.206651562351531,0,0.741800787835671,0,0,0,0,0,0.438977620880838,0,1.80285670687916,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0,0,0,0,0,0,0.243947412259191,0,0,0,0.252320850875628,0,0,0,0,0.464367928031979,0,0,0,0.241011029883482,0.441175890929576,0.217879444092406,0.71181185733329,0.808987848960987,0.98110732562673,2.69323009862473,0,0,0,0,0,0,0.590789906681404,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.141775097242386,0,0,0,9.85326475791887,0.088048434013226,24.2573895182703,15.9973148292827,26.3846685861134,0.380987365753014,1.14596527667483,1.17217447210047,3.4214489204541,0.616964956219941,0.300343057843917,0.571652865261156,0,0,0,0,0,0,0,0,0,0,0,0.714889968290738,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0.862510299438069,0.128343036279748,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0.117141414992713,0,0,0,0,1.10621501125022,0,0,0,0.413536052245775,1.50999940573032,2.45473382947922,0,0,0,0.992431231275107,0,0.561320188866147,0.128139149255701,0,0.160853921143607,0,0,0,0,0,0.232420756919918,0.120859449591622,0,0,0,0,0,0,0,0,0,0.105551628892876,0,0,0,0,0,0,0,0,0.223874754722178,0.219259876645935,0,0,0,0,0.618246069886334,0,0,0,0,0,0,0,0,0,0,0,0.0852266274161009,0,0,0,0,0,0.464845549297286,0.31481234683064,0,0,0,0,0.18532421910392,0,0,0,0,0,0,0,1.56989728039846,0,0.274537029736055,0.235624804691373,0,0,0,0,0,3.16950440270266,0,0,0,0,0.66343897524122,0,0,0,0,0.6196469961995,0,0.143411352204052,0,0.7133421029625,0,3.79993743535795,0.987884678879706,0,0,0.0962221127255121,0,0,0.847294206991012,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.245040215981032,0.185803175125719,0,0,0,0,0,0,0,0,0,0.156679895773023,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.561421621224659,1.61158997199083,0,0.111443384277478,0,1.43246690842614,0,0.921482106297696,0,0.140669416410513,0,0,0.422250816255987,4.98119970627674,2.48655523978033,0,0.102268682502155,0.246169610922139,0,0.0898683511473268,0.537063524026827,0,2.26879832964947,0,0,0.969332746095218,0,0,1.04171104434093,0.0874599999961957,0.724999575434793,0.1137934482855,0.762760950878299,0.709163045303809,0,0,0.347249989866585,0,0,0,0,0,3.07139556015562,0.871507708151921,3.90386483980089,0.769502585037971,0.227884111694002,0,0.179515288819544,0,0.957003479195758,0,1.06606955203727,0,0,0,0,0,0.167821586975843,0,0,0,0.163232808159148,0,0,0,1.41532103205343,0.611030144933625,6.22694370229306,1.85345908419754,0.313265848516366,0.404406797884062,1.60515529459758,0.234264445725339,0,0.782658475728359,0,1.18375320854817,4.83962864194656,0,0,0.150323419414493,0,0,0,0.941798755221676,0,0,0.277349346026277,1.04135843001079,0.489961987071888,0.0870592065804026,3.31980669659857,0,0.580537987734511,0.0730893170861856,0.492692742319255,1.64881328030313,0,1.58186518546373,0,0,0.0633107959558787,0.977756913674015,0,6.61704283691993,0.999048047910651,0,0.114536596165916,0.343189995723929,0,0.49701014226173,3.53541051925193,0,0,0,0.577901179803038,0,0,0,0.429765441419957,1.31443677139657,8.93703684071214,0.916641696046735,2.87149209830726,0.599037001496973,2.14613024068285,0.446342914883745,0.940568614814168,0.360299883542404,0,0,0.0824158583811665,0,0.196854963029498,0,0,0,0.160753148465019,0.137539436597234,0,1.349843349309,9.2856234546954,0.121499113316049,0,0.315222829196793,0.367182116944987,0.844802692155252,6.63363155531526,0,0,1.32418394073086,0,0,0,0,0,0.164185041498678,0,0,0.439656701034247,1.32506888912221,0,0,0.684347351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| 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| ||
|short_description=p6@NR4A1 | |||
}} | }} |
Latest revision as of 21:13, 18 September 2015
Short description: | p6@NR4A1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_NR4A1_5end |
Coexpression cluster: | C1018_immature_CD14_Mast_cervical_seminal_heart_ovary |
Association with transcript: | 100bp_to_AB307717, AB464647, AB590255, BT007144, CR456704, CU677577, DQ891134, DQ894313, HQ692855_5end |
EntrezGene: | NR4A1 |
HGNC: | 7980 |
UniProt: | Q53Y00Q6IBU8 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.02e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.02e-20 | 42 |
granulocyte monocyte progenitor cell | 4.36e-18 | 67 |
defensive cell | 5.62e-17 | 48 |
phagocyte | 5.62e-17 | 48 |
myeloid lineage restricted progenitor cell | 1.27e-15 | 66 |
myeloid leukocyte | 8.05e-15 | 72 |
macrophage dendritic cell progenitor | 3.76e-14 | 61 |
monopoietic cell | 3.25e-12 | 59 |
monocyte | 3.25e-12 | 59 |
monoblast | 3.25e-12 | 59 |
promonocyte | 3.25e-12 | 59 |
hematopoietic lineage restricted progenitor cell | 2.64e-09 | 120 |
leukocyte | 3.34e-09 | 136 |
myeloid cell | 6.76e-09 | 108 |
common myeloid progenitor | 6.76e-09 | 108 |
mast cell | 8.80e-08 | 5 |
basophil mast progenitor cell | 8.80e-08 | 5 |
nongranular leukocyte | 9.84e-07 | 115 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 4.48e-16 | 76 |
bone element | 1.43e-15 | 82 |
hematopoietic system | 1.39e-14 | 98 |
blood island | 1.39e-14 | 98 |
skeletal element | 2.11e-13 | 90 |
skeletal system | 3.49e-13 | 100 |
hemolymphoid system | 2.36e-12 | 108 |
immune system | 1.37e-11 | 93 |
lateral plate mesoderm | 1.68e-08 | 203 |
musculoskeletal system | 9.94e-08 | 167 |
mesoderm | 2.24e-07 | 315 |
mesoderm-derived structure | 2.24e-07 | 315 |
presumptive mesoderm | 2.24e-07 | 315 |
adult organism | 4.27e-07 | 114 |