FFCP PHASE1:Hg19::chr18:21166649..21166681,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4864 | |EntrezGene=4864 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7897 | |HGNC=7897 | ||
|TSSclassifier=strong | |||
|UniProt=O15118 | |UniProt=O15118 | ||
|association_with_transcript=-68bp_to_NM_000271,uc002kum.3,uc010xba.1_5end | |association_with_transcript=-68bp_to_NM_000271,uc002kum.3,uc010xba.1_5end | ||
|cluster_id=chr18:21166649..21166681,- | |||
|coexpression_cluster_id=C3709 | |||
|description=CAGE_peak_4_at_NPC1_5end | |description=CAGE_peak_4_at_NPC1_5end | ||
|id=chr18:21166649..21166681,- | |id=chr18:21166649..21166681,- | ||
|ontology_enrichment_celltype=CL:0002194!7.28e-10!63;CL:0000576!7.28e-10!63;CL:0000040!7.28e-10!63;CL:0000559!7.28e-10!63;CL:0002009!9.03e-10!65;CL:0000860!3.18e-08!45;CL:0002057!5.86e-08!42;CL:0000557!9.97e-08!71;CL:0000839!2.31e-07!70;CL:0000766!9.53e-07!76 | |ontology_enrichment_celltype=CL:0002194!7.28e-10!63;CL:0000576!7.28e-10!63;CL:0000040!7.28e-10!63;CL:0000559!7.28e-10!63;CL:0002009!9.03e-10!65;CL:0000860!3.18e-08!45;CL:0002057!5.86e-08!42;CL:0000557!9.97e-08!71;CL:0000839!2.31e-07!70;CL:0000766!9.53e-07!76 | ||
|ontology_enrichment_celltype_v019=CL:0000473;1.14e-18;39!CL:0000234;1.14e-18;39!CL:0000860;2.49e-18;33!CL:0002057;2.49e-18;33!CL:0000576;9.59e-09;48!CL:1000507;2.11e-08;10!CL:1000494;2.11e-08;10!CL:0000766;4.49e-07;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0002009,1.66e-20,61;CL:0002194,2.92e-20,59;CL:0000576,2.92e-20,59;CL:0000040,2.92e-20,59;CL:0000559,2.92e-20,59;CL:0000473,3.36e-20,48;CL:0000234,3.36e-20,48;CL:0000557,1.99e-17,67;CL:0000839,1.10e-16,66;CL:0000860,1.20e-16,42;CL:0002057,1.20e-16,42;CL:0000766,3.71e-16,72;CL:1000507,3.42e-08,10;CL:1000494,3.42e-08,10;CL:0000763,8.24e-08,108;CL:0000049,8.24e-08,108 | |||
|ontology_enrichment_development_v019=CL:0002057;3.29e-12;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000062!1.22e-15!511;UBERON:0000467!8.82e-10!625;UBERON:0000480!9.72e-10!626;UBERON:0002371!1.39e-08!80;UBERON:0001474!2.27e-08!86;UBERON:0004765!5.06e-08!101;UBERON:0001434!5.06e-08!101;UBERON:0000468!1.32e-07!659;UBERON:0000923!2.01e-07!604;UBERON:0005291!2.01e-07!604;UBERON:0006598!2.01e-07!604;UBERON:0002532!2.01e-07!604;UBERON:0002050!3.03e-07!605;UBERON:0005423!3.03e-07!605;UBERON:0002405!3.63e-07!115;UBERON:0000922!6.10e-07!612 | |ontology_enrichment_uberon=UBERON:0000062!1.22e-15!511;UBERON:0000467!8.82e-10!625;UBERON:0000480!9.72e-10!626;UBERON:0002371!1.39e-08!80;UBERON:0001474!2.27e-08!86;UBERON:0004765!5.06e-08!101;UBERON:0001434!5.06e-08!101;UBERON:0000468!1.32e-07!659;UBERON:0000923!2.01e-07!604;UBERON:0005291!2.01e-07!604;UBERON:0006598!2.01e-07!604;UBERON:0002532!2.01e-07!604;UBERON:0002050!3.03e-07!605;UBERON:0005423!3.03e-07!605;UBERON:0002405!3.63e-07!115;UBERON:0000922!6.10e-07!612 | ||
|ontology_enrichment_uberon_v019=UBERON:0004211;2.11e-08;10!UBERON:0009773;2.11e-08;10!UBERON:0001231;2.11e-08;10!UBERON:0004810;2.11e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.87e-19,76;UBERON:0001474,7.05e-18,82;UBERON:0004765,1.12e-15,90;UBERON:0002405,1.34e-14,93;UBERON:0002390,6.76e-14,98;UBERON:0003061,6.76e-14,98;UBERON:0001434,1.55e-13,100;UBERON:0002193,1.33e-12,108;UBERON:0005423,1.28e-08,581;UBERON:0004810,3.42e-08,10;UBERON:0000922,1.03e-07,592 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.704772020479856,0,0.446961094427288,0.872338524100369,0,0,0,1.47440361900905,2.09340350391728,1.52908960491121,0.263766978228454,0,0,0,0.602694528023977,0,0,0,0,0,0.286235987131057,0.273748850145768,0.251085279189606,0.0764134057479513,0,0.236132343941038,0,0,0.309632246632152,0,0.90361775633475,1.10926203050036,0,0,0,1.66198622559563,1.20326668482085,0.651032612147555,1.11957737119962,0.32389366601898,0,0.145398238779565,2.64513160582167,0.485168122375632,1.16214518452842,6.98985409637104,6.81354015969228,7.48000220037591,12.2957139133968,7.80391358632331,4.82643953031266,7.74581620300591,6.77132432971709,1.88242339542605,3.82068610080984,1.34834090667051,3.06083892370903,4.17207735198922,7.03270838378945,3.62836430205388,7.97854630486527,2.55734850319616,1.45104619314292,1.70215567407342,1.86846674698672,13.8186765891209,11.9941071236646,7.8187984093842,0,2.94622108790052,1.89877432464531,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0.569212969109448,0,1.14681968437569,0,2.24203425192614,0.263384084775077,0.590129310341499,0.393010762749165,0.411202997999018,0,0,0,0,0,0.589211814949674,0,0,0,0,0,0,0,0,0,0,0,0,0.34362744548263,0,0,0,0,0.301150238155546,0,0,0,0.821127996921047,0.80642697289893,0.802320587350522,0.724122019413995,0,0,0.511450247374121,0.722878304769133,1.50401373190767,0.724232594804119,0.795285947051099,0,0.283604451492204,0.443458794925128,0.614843499851882,0.72038491523742,1.09288586487763,0.741568885568859,1.9472843619281,1.21890816109487,3.72282289452822,1.19245312152671,1.14398982156026,1.11437250398869,0,0,0,0,0,0.275118041940067,0,0.258416759169329,0.35576626268671,0,0.402829317109147,0,0,0,0,0.0892997282840798,0,0.112611480483322,0,0.949265659568129,0,1.31780417436063,0,0,0,0.25326102332916,1.45650098894541,0.573673241497627,0.709336764396714,0,0,0.24666754841716,0.311211035399766,0.404132016209064,0.163461903113459,0,0,0.70296429550139,1.24864030732128,0.570471821544449,1.19558944441441,0.23486899728753,0.647491777472526,0.140450806702248,0.61246251376468,0.245668634623536,0.206651562351531,0,2.71993622206413,0.910161361938026,0,0.505008341862199,0.375355559615893,0.554128230968366,0.877955241761676,0.612975591598039,5.85928429735728,0.226864366320042,2.87023417102179,0.213557388818567,0.211931901159562,2.70081986475962,0.103052529238439,0.257640540045629,0.37223371266318,1.18143432568886,0.389748020644795,1.26216887122057,0,0.161646056818812,0.710019185033229,1.10827308050404,0.508681776931463,2.89891279744945,0.545492241181669,0.286804595389004,0.243947412259191,0.132529768321485,0.348581828608555,0.207322110030741,0,0,1.56449532329816,0.643240938192885,1.38134921352481,1.85747171212792,2.88751792667834,1.8929088006375,1.34867752062481,2.16909926895134,2.20587945464788,1.30727666455444,2.13543557199987,0.943819157121151,3.13954344200554,2.69323009862473,0,1.40241773803446,0.4115740113314,0,0,0,0.590789906681404,0,0.614942192715568,0.857839051492628,0.548751427043128,0,0.402115889646523,0,0.325808305310325,2.07986957055916,1.44331342025273,0.463721619900307,0,1.15493158208859,2.31492756288305,0.190254152234598,3.1608175918371,0,7.38651018262192,0.702012795417713,9.36376322418988,0,1.17587489739202,0.425325291727159,0.53735113621709,1.45316969256981,0,0.492663237895943,0,0,0,0.12624243342638,0.444485260045183,2.29193055334967,0,3.4214489204541,0.822619941626588,1.8020583470635,0.285826432630578,0.672786506072164,0.43596006883328,0.2933531432838,0.129271715757778,0,0,0.531876233169741,0,0.514414748524284,1.41849132023278,2.1313774321288,0.57191197463259,0,0,0.325736184293735,0.355391948742546,0,0.301439377059586,0,0.199945982364114,1.2162378064119,3.01354254859276,4.21667878966063,0,0,1.42636905040718,0.723906533337896,2.05476322550383,1.61154866915906,0.112085143993527,0.985153801009636,0.862510299438069,1.15508732651774,0,0,2.31986643833309,0.167516265334349,0.637938751653163,0,2.99161459204025,0,0,0,0,0.623912584592421,0.535286966391485,0.157702415033935,0.117141414992713,0.601892199455438,6.82222512167955,0,0,0,0.868836144680828,0,0,0,0,0.213455115606889,1.21251028578504,0,0.30239029332968,0.496215615637554,0.920771839728375,1.40330047216537,0.768834895534206,0.511707249066704,0,0,0.154209693802656,0.177561725313127,0.410635780069046,0,0.116210378459959,0.604297247958111,1.60405176242628,0.828728900423067,0.918515585316854,0.182091168006717,1.44236856455367,6.76799419361118,3.92778219232515,4.70609861506113,4.38417673959782,1.05551628892876,0,0.340187410553031,0.215915916102139,0,0.541892875087706,1.00337954770971,4.84264918785573,7.47968408035852,1.79099803777743,0,0,3.33385162651306,2.62411716559765,0.976135183992909,0.515205058238611,0,0,1.72279661398852,0,0,0.096670718292122,0.462145851343933,0.307007349452259,0.413509717453592,0.429680979473094,0.435050081742686,0.511359764496605,0.267096106940212,1.32227932288782,0.576570202095319,1.78657797492418,1.6185244936888,0,0.31481234683064,0.6970372701606,0.616067160352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| ||
|short_description=p4@NPC1 | |short_description=p4@NPC1 | ||
}} | }} |
Latest revision as of 23:46, 18 September 2015
Short description: | p4@NPC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_NPC1_5end |
Coexpression cluster: | C3709_schwannoma_CD14_corpus_Macrophage_prostate_optic_clear |
Association with transcript: | -68bp_to_NM_000271, uc002kum.3, uc010xba.1_5end |
EntrezGene: | NPC1 |
HGNC: | 7897 |
UniProt: | O15118 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
macrophage dendritic cell progenitor | 1.66e-20 | 61 |
monopoietic cell | 2.92e-20 | 59 |
monocyte | 2.92e-20 | 59 |
monoblast | 2.92e-20 | 59 |
promonocyte | 2.92e-20 | 59 |
defensive cell | 3.36e-20 | 48 |
phagocyte | 3.36e-20 | 48 |
granulocyte monocyte progenitor cell | 1.99e-17 | 67 |
myeloid lineage restricted progenitor cell | 1.10e-16 | 66 |
classical monocyte | 1.20e-16 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.20e-16 | 42 |
myeloid leukocyte | 3.71e-16 | 72 |
kidney tubule cell | 3.42e-08 | 10 |
nephron tubule epithelial cell | 3.42e-08 | 10 |
myeloid cell | 8.24e-08 | 108 |
common myeloid progenitor | 8.24e-08 | 108 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.87e-19 | 76 |
bone element | 7.05e-18 | 82 |
skeletal element | 1.12e-15 | 90 |
immune system | 1.34e-14 | 93 |
hematopoietic system | 6.76e-14 | 98 |
blood island | 6.76e-14 | 98 |
skeletal system | 1.55e-13 | 100 |
hemolymphoid system | 1.33e-12 | 108 |
developing anatomical structure | 1.28e-08 | 581 |
nephron tubule epithelium | 3.42e-08 | 10 |
embryo | 1.03e-07 | 592 |