FFCP PHASE1:Hg19::chr12:57644922..57644936,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=246329 | |EntrezGene=246329 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28423 | |HGNC=28423 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=30bp_to_ENST00000554578_5end | |association_with_transcript=30bp_to_ENST00000554578_5end | ||
|cluster_id=chr12:57644922..57644936,- | |||
|coexpression_cluster_id=C31 | |coexpression_cluster_id=C31 | ||
|description=CAGE_peak_2_at_STAC3_5end | |description=CAGE_peak_2_at_STAC3_5end | ||
|id=chr12:57644922..57644936,- | |id=chr12:57644922..57644936,- | ||
|ontology_enrichment_celltype=CL:0000188!3.34e-27!9;CL:0000594!2.36e-12!3;CL:0000515!2.73e-09!4;CL:0000680!2.23e-07!57;CL:0000056!2.23e-07!57;CL:0000355!2.23e-07!57 | |ontology_enrichment_celltype=CL:0000188!3.34e-27!9;CL:0000594!2.36e-12!3;CL:0000515!2.73e-09!4;CL:0000680!2.23e-07!57;CL:0000056!2.23e-07!57;CL:0000355!2.23e-07!57 | ||
|ontology_enrichment_celltype_v019=CL:0000188;1.52e-24;9!CL:0000680;3.71e-14;7!CL:0000594;3.39e-09;3!CL:0000515;5.57e-09;3!CL:0000056;6.08e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000188,1.59e-24,9;CL:0000594,3.69e-09,3;CL:0000515,6.08e-07,4 | |||
|ontology_enrichment_development_v019=UBERON:0004874;7.26e-08;1!UBERON:0006298;1.35e-07;1!UBERON:0009143;1.98e-07;1!UBERON:0008801;2.88e-07;1!CL:0000515;6.08e-07;4 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001134!4.84e-13!61;UBERON:0002036!4.84e-13!61;UBERON:0003082!4.84e-13!61;UBERON:0002385!1.65e-12!63;UBERON:0001015!1.65e-12!63;UBERON:0000383!1.65e-12!63;UBERON:0004290!6.90e-11!70;UBERON:0000078!6.27e-10!18;UBERON:0000914!7.88e-10!83;UBERON:0002329!7.88e-10!83;UBERON:0003077!7.88e-10!83;UBERON:0003059!7.88e-10!83;UBERON:0007282!7.88e-10!83;UBERON:0009618!7.88e-10!83;UBERON:0007285!7.88e-10!83;UBERON:0001630!1.20e-09!2;UBERON:0005090!1.20e-09!2;UBERON:0000341!1.74e-09!2;UBERON:0003127!5.62e-09!2;UBERON:0001829!5.85e-09!2;UBERON:0007023!8.66e-09!115;UBERON:0000486!9.14e-09!82;UBERON:0003104!1.20e-08!238;UBERON:0009142!1.20e-08!238;UBERON:0000166!2.31e-08!21;UBERON:0000165!1.01e-07!28;UBERON:0000930!1.01e-07!28;UBERON:0005256!3.19e-07!143 | |ontology_enrichment_uberon=UBERON:0001134!4.84e-13!61;UBERON:0002036!4.84e-13!61;UBERON:0003082!4.84e-13!61;UBERON:0002385!1.65e-12!63;UBERON:0001015!1.65e-12!63;UBERON:0000383!1.65e-12!63;UBERON:0004290!6.90e-11!70;UBERON:0000078!6.27e-10!18;UBERON:0000914!7.88e-10!83;UBERON:0002329!7.88e-10!83;UBERON:0003077!7.88e-10!83;UBERON:0003059!7.88e-10!83;UBERON:0007282!7.88e-10!83;UBERON:0009618!7.88e-10!83;UBERON:0007285!7.88e-10!83;UBERON:0001630!1.20e-09!2;UBERON:0005090!1.20e-09!2;UBERON:0000341!1.74e-09!2;UBERON:0003127!5.62e-09!2;UBERON:0001829!5.85e-09!2;UBERON:0007023!8.66e-09!115;UBERON:0000486!9.14e-09!82;UBERON:0003104!1.20e-08!238;UBERON:0009142!1.20e-08!238;UBERON:0000166!2.31e-08!21;UBERON:0000165!1.01e-07!28;UBERON:0000930!1.01e-07!28;UBERON:0005256!3.19e-07!143 | ||
|ontology_enrichment_uberon_v019=UBERON:0001134;1.26e-54;16!UBERON:0002036;1.26e-54;16!UBERON:0002385;9.99e-27;31!UBERON:0001015;9.99e-27;31!UBERON:0000383;9.99e-27;31!UBERON:0005090;2.61e-14;2!UBERON:0001630;2.61e-14;2!UBERON:0000341;5.01e-14;2!UBERON:0003127;3.07e-13;2!UBERON:0001829;3.48e-13;2!UBERON:0001723;8.75e-10;3!UBERON:0001033;8.75e-10;3!UBERON:0001389;4.28e-08;1!UBERON:0000026;4.28e-08;1!UBERON:0008784;4.28e-08;1!UBERON:0006058;4.28e-08;1!UBERON:0003663;4.28e-08;1!UBERON:0004256;4.28e-08;1!UBERON:0004708;4.28e-08;1!UBERON:0002101;4.28e-08;1!UBERON:0004709;4.28e-08;1!UBERON:0002529;4.28e-08;1!UBERON:0010538;4.28e-08;1!UBERON:0003661;4.28e-08;1!UBERON:0010890;4.28e-08;1!UBERON:0002471;4.28e-08;1!UBERON:0001383;4.28e-08;1!UBERON:0010758;4.28e-08;1!UBERON:0010707;4.28e-08;1!UBERON:0000978;4.28e-08;1!UBERON:0002103;4.28e-08;1!UBERON:0001665;4.28e-08;1!UBERON:0003823;4.28e-08;1!UBERON:0000154;4.28e-08;1!UBERON:0010709;4.28e-08;1!UBERON:0002426;6.58e-08;1!UBERON:0003831;6.58e-08;1!UBERON:0003898;6.58e-08;1!UBERON:0004830;6.58e-08;1!UBERON:0003830;6.58e-08;1!UBERON:0005175;6.58e-08;1!UBERON:0001774;6.58e-08;1!UBERON:0001103;6.58e-08;1!UBERON:0000989;7.26e-08;1!UBERON:0008811;7.26e-08;1!UBERON:0007029;1.01e-07;1!UBERON:0001301;1.18e-07;1!UBERON:0001736;1.35e-07;1!UBERON:0002372;1.98e-07;1!UBERON:0001961;1.98e-07;1!UBERON:0001744;1.98e-07;1!UBERON:0001042;1.98e-07;1!UBERON:0001735;1.98e-07;1!UBERON:0001831;2.88e-07;1!UBERON:0001567;2.88e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005090,2.70e-14,2;UBERON:0001630,2.70e-14,2;UBERON:0000341,4.85e-14,2;UBERON:0003127,3.07e-13,2;UBERON:0001829,3.27e-13,2;UBERON:0001134,2.12e-12,62;UBERON:0002036,2.12e-12,62;UBERON:0003082,2.12e-12,62;UBERON:0002385,6.10e-12,64;UBERON:0001015,6.10e-12,64;UBERON:0000383,6.10e-12,64;UBERON:0002329,1.53e-10,71;UBERON:0003059,1.53e-10,71;UBERON:0007282,1.53e-10,71;UBERON:0004290,1.53e-10,71;UBERON:0009618,1.53e-10,71;UBERON:0003077,2.31e-10,72;UBERON:0007285,2.31e-10,72;UBERON:0007524,3.44e-10,73;UBERON:0001723,8.75e-10,3;UBERON:0001033,8.75e-10,3;UBERON:0010056,8.75e-10,3;UBERON:0007503,2.15e-09,78;UBERON:0000486,1.08e-08,83;UBERON:0005256,1.26e-08,122;UBERON:0005418,4.28e-08,1;UBERON:0001389,4.28e-08,1;UBERON:0000026,4.28e-08,1;UBERON:0008784,4.28e-08,1;UBERON:0006058,4.28e-08,1;UBERON:0003663,4.28e-08,1;UBERON:0004256,4.28e-08,1;UBERON:0004708,4.28e-08,1;UBERON:0002101,4.28e-08,1;UBERON:0004709,4.28e-08,1;UBERON:0002529,4.28e-08,1;UBERON:0010538,4.28e-08,1;UBERON:0003661,4.28e-08,1;UBERON:0010890,4.28e-08,1;UBERON:0002471,4.28e-08,1;UBERON:0001383,4.28e-08,1;UBERON:0004357,4.28e-08,1;UBERON:0004347,4.28e-08,1;UBERON:0005420,4.28e-08,1;UBERON:0005732,4.28e-08,1;UBERON:0010758,4.28e-08,1;UBERON:0010707,4.28e-08,1;UBERON:0000978,4.28e-08,1;UBERON:0002103,4.28e-08,1;UBERON:0001665,4.28e-08,1;UBERON:0003823,4.28e-08,1;UBERON:0000154,4.28e-08,1;UBERON:0010709,4.28e-08,1;UBERON:0005733,4.28e-08,1;UBERON:0005730,4.28e-08,1;UBERON:0002426,6.80e-08,1;UBERON:0003831,6.80e-08,1;UBERON:0003898,6.80e-08,1;UBERON:0004830,6.80e-08,1;UBERON:0003830,6.80e-08,1;UBERON:0005175,6.80e-08,1;UBERON:0001774,6.80e-08,1;UBERON:0001103,6.80e-08,1;UBERON:0010084,6.80e-08,1;UBERON:0000989,7.26e-08,1;UBERON:0008811,7.26e-08,1;UBERON:0006258,7.26e-08,1;UBERON:0005876,7.26e-08,1;UBERON:0004874,7.26e-08,1;UBERON:0007029,1.01e-07,1;UBERON:0001301,1.15e-07,1;UBERON:0001736,1.39e-07,1;UBERON:0006298,1.39e-07,1;UBERON:0002372,1.69e-07,1;UBERON:0001961,1.69e-07,1;UBERON:0001744,1.69e-07,1;UBERON:0001735,1.69e-07,1;UBERON:0001831,2.63e-07,1;UBERON:0001567,2.63e-07,1;UBERON:0008801,2.63e-07,1;UBERON:0000166,5.42e-07,22;UBERON:0007023,9.15e-07,114 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46128221334885,0.410952645100767,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.6180357000839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6875337145141,0.616194468458578,2.76306614507033,2.20538515975249,0.322260734604821,2.0302337147992,4.77269113530165,87.8746191833298,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.746925896031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.94070672022902,0,0,0,0,2.13375836274523,0,7.90932592731864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.64477330057155,38.2082607359757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.6409458220288,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,117.184619531009,113.853052803578,102.063669957762,16.5141737640107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12856355064087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.8453061087109,26.4251518924752,0,0,0,0.954707374172474,3.63810940124795,67.492191848058,82.820458862638,2.89613827962726,1.43444410785353,5.32256570473621,0,0,0,0,0,0,0,0,2.01273793591026,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.50133791063589,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122834317311768,0,0,0,0,0,0,0.125118519871964,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.94017422771084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.46128221334885,0.410952645100767,1.25342674267927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,21.6180357000839,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,20.6875337145141,0.616194468458578,2.76306614507033,2.20538515975249,0.322260734604821,2.0302337147992,4.77269113530165,87.8746191833298,0,0,0,0,0,0,0,0,0,0,0,0,0.372158369359667,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02555725490326,0,0.111443384277478,0,0,0,0,0,0,0,0,0,0.19924798825107,0,0,0,0,0,0,0,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.746925896031,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.94070672022902,0,0,0,0,2.13375836274523,0,7.90932592731864,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0788057072991982,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.189403005275089,0.251567901752575,0.889811221596536,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0675375846183947,0,0,0,0,1.64477330057155,38.2082607359757,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.6409458220288,0,0,0,0,0.430227358820278,0,0,0,0,0,0,0,0,0,117.184619531009,113.853052803578,102.063669957762,16.5141737640107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.12856355064087,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,45.8453061087109,26.4251518924752,0,0,0,0.954707374172474,3.63810940124795,67.492191848058,82.820458862638,2.89613827962726,1.43444410785353,5.32256570473621,0,0,0,0,0,0,0,0,2.01273793591026,0 | ||
|short_description=p2@STAC3 | |short_description=p2@STAC3 | ||
}} | }} |
Latest revision as of 13:59, 19 September 2015
Short description: | p2@STAC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_STAC3_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 30bp_to_ENST00000554578_5end |
EntrezGene: | STAC3 |
HGNC: | 28423 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
cell of skeletal muscle | 1.59e-24 | 9 |
skeletal muscle satellite cell | 3.69e-09 | 3 |
skeletal muscle myoblast | 6.08e-07 | 4 |