FFCP PHASE1:Hg19::chr2:20424884..20424897,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6382 | |EntrezGene=6382 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10658 | |HGNC=10658 | ||
|TSSclassifier=strong | |||
|UniProt=P18827 | |UniProt=P18827 | ||
|association_with_transcript=-11bp_to_ENST00000254351_5end | |association_with_transcript=-11bp_to_ENST00000254351_5end | ||
|cluster_id=chr2:20424884..20424897,- | |||
|coexpression_cluster_id=C572 | |||
|description=CAGE_peak_3_at_SDC1_5end | |description=CAGE_peak_3_at_SDC1_5end | ||
|id=chr2:20424884..20424897,- | |id=chr2:20424884..20424897,- | ||
|ontology_enrichment_celltype=CL:0000066!7.43e-36!254;CL:0002321!1.86e-20!248;CL:0000220!3.19e-20!246;CL:0000223!6.89e-18!59;CL:0002076!1.12e-16!43;CL:0002368!1.28e-08!13;CL:0000221!2.49e-08!71;CL:0000055!9.60e-08!180;CL:0002251!4.47e-07!21 | |ontology_enrichment_celltype=CL:0000066!7.43e-36!254;CL:0002321!1.86e-20!248;CL:0000220!3.19e-20!246;CL:0000223!6.89e-18!59;CL:0002076!1.12e-16!43;CL:0002368!1.28e-08!13;CL:0000221!2.49e-08!71;CL:0000055!9.60e-08!180;CL:0002251!4.47e-07!21 | ||
|ontology_enrichment_celltype_v019=CL:0002076;2.79e-13;42!CL:0002368;7.26e-09;13!CL:0002251;8.01e-08;20 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,5.96e-33,253;CL:0000223,2.20e-18,58;CL:0002321,6.95e-18,250;CL:0002076,7.56e-18,42;CL:0002368,7.44e-09,13;CL:0002251,8.05e-08,20;CL:0000221,1.75e-07,72 | |||
|ontology_enrichment_development_v019=CL:0000223;3.84e-10;58 | |||
|ontology_enrichment_disease=DOID:305!3.14e-13!106;DOID:0050687!1.68e-11!143 | |ontology_enrichment_disease=DOID:305!3.14e-13!106;DOID:0050687!1.68e-11!143 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.35e-12,106;DOID:0050687,8.71e-11,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!6.81e-27!169;UBERON:0000925!6.81e-27!169;UBERON:0006595!6.81e-27!169;UBERON:0003104!3.28e-21!238;UBERON:0009142!3.28e-21!238;UBERON:0001007!1.54e-20!155;UBERON:0001555!1.54e-20!155;UBERON:0007026!1.54e-20!155;UBERON:0000077!1.14e-18!130;UBERON:0000475!1.44e-17!365;UBERON:0002100!2.37e-17!216;UBERON:0004921!3.82e-17!129;UBERON:0004185!3.82e-17!129;UBERON:0000466!4.36e-17!126;UBERON:0000481!7.67e-15!347;UBERON:0003102!3.50e-14!95;UBERON:0005177!4.32e-14!107;UBERON:0000464!5.24e-14!104;UBERON:0009569!1.42e-13!113;UBERON:0005911!2.67e-13!82;UBERON:0001041!9.16e-13!98;UBERON:0001004!1.45e-12!72;UBERON:0001008!2.49e-11!45;UBERON:0001048!3.82e-11!168;UBERON:0006554!4.95e-11!44;UBERON:0005256!3.63e-10!143;UBERON:0000468!8.28e-10!659;UBERON:0005153!9.58e-10!37;UBERON:0000161!2.50e-09!35;UBERON:0000065!3.08e-09!53;UBERON:0005178!4.45e-09!34;UBERON:0002224!4.45e-09!34;UBERON:0005172!4.66e-09!55;UBERON:0005173!4.66e-09!55;UBERON:0003100!1.17e-08!41;UBERON:0000480!1.75e-08!626;UBERON:0005156!1.87e-08!59;UBERON:0000990!1.87e-08!59;UBERON:0005181!2.52e-08!35;UBERON:0000467!2.93e-08!625;UBERON:0001444!3.63e-08!48;UBERON:0000062!5.35e-08!511;UBERON:0005157!7.26e-08!51;UBERON:0000064!9.15e-08!219;UBERON:0002417!9.47e-08!61;UBERON:0000916!9.47e-08!61;UBERON:0003064!1.12e-07!37;UBERON:0008947!1.23e-07!38;UBERON:0003258!1.23e-07!38;UBERON:0002365!1.57e-07!31;UBERON:0002330!1.57e-07!31;UBERON:0003134!7.48e-07!37;UBERON:0000474!7.48e-07!37;UBERON:0002553!8.90e-07!70;UBERON:0000072!9.07e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.59e-09;30!UBERON:0001008;1.59e-09;30!UBERON:0005178;1.08e-07;34!UBERON:0002224;1.08e-07;34!UBERON:0005911;4.73e-07;36!UBERON:0005181;5.37e-07;35!UBERON:0002365;6.96e-07;31!UBERON:0002330;6.96e-07;31!UBERON:0003100;8.57e-07;41 | |||
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|phase1_expression=1.63510541343501,2.5692062866918,0.563817616383885,0,0.446961094427288,0,0,1.89515962028049,0.783556884599516,25.3105954596554,101.181169356002,47.6202191243776,63.5678417530573,0,0.331397375727916,18.8251041006497,13.8619741445515,19.7183724404591,12.1983199697627,19.3300061180557,38.7601313364081,9.09018692286455,11.7356754723733,25.1848942134107,13.5586050762387,4.35556412763322,4.8439347775468,4.32909297225236,0,0,0.154816123316076,140.671447345276,193.072993936858,119.060791273706,0,0,0,0,0,0,0,0.32389366601898,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.23779651843358,0,0,0,0,0,0,0,0,0,0,0,0,1.09227722252426,0,0.426730222566507,0.400395987036012,0,0,0.954053754535364,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.34140171940727,2.17366355134002,5.06014813338393,2.00535164254356,2.462390822334,24.6538643585841,8.75942766544745,9.35894689924272,7.76052891118974,6.14843499851882,17.7476647299401,272.492875642822,197.628108004101,0,0.174129737299267,0.398873881556595,0,0,0,0.39752481473341,5.16140757063675,1.38856200643038,1.13061588384802,1.67799774483962,0.550236083880135,0.208994966536811,1.03366703667732,0.35576626268671,0.33472061276467,0.805658634218294,3.04108842287405,1.22031028774085,0.367663080345869,1.62028389576352,0.446498641420399,0,0.450445921933289,1.53316637465883,0,1.28241220751285,0,0,173.565432752729,0.496971951695318,5.57174251324151,1.98613771219828,21.2259099354122,7.09336764396714,1.12135520028461,3.20246987189115,4.9333509683432,1.24484414159907,0.134710672069688,0.163461903113459,4.69208025699287,2.30470369792,2.34321431833797,1.5608003841516,5.13424639390004,0.448346041655403,2.81842796745036,2.26622122115384,3.65172097425846,0.408308342509787,4.66770405784718,0.413303124703062,8.31602000097437,5.19260551484969,0.910161361938026,3.59309070908119,5.72342787443825,6.13080747372624,0.554128230968366,10.0964852802593,3.98434134538726,3.90618953157152,2.38207584636044,22.9618733681743,2.13557388818567,3.17897851739343,37.5113870105503,10.3052529238439,13.3973080823727,8.56137539125313,38.4810037510087,15.8822318412754,12.3692549379616,2.94559675655358,11.3152239773168,32.6608825115285,10.5789703139022,13.90396856946,152.676073999005,111.553163321651,105.544091103153,6.34263271873896,7.1566074893602,7.43641234364918,7.56725701612204,8.57890892977137,4.74470566798579,29.725411142665,35.3782516006087,12.4321429217232,0,0.721879481669586,5.08719240171329,5.39471008249925,5.78426471720357,3.86028904563379,5.88274499049497,5.45722423955522,4.31460186112526,5.69042248863504,5.38646019724947,0.738155454624648,9.81692416624121,4.9388881359768,1.47008711385542,119.149732732521,85.5059678509535,67.9408392683615,0,16.7264276418634,12.3528823414938,162.430422404766,136.00612144172,201.259002768085,86.5701962232252,1.62904152655162,12.4792174233549,7.21656710126366,9.5062932079563,4.3441216867254,0,0.462985512576611,0,30.8179715204117,24.0376125386564,0,1.8720341211139,0.445893486866185,83.4231122482315,110.868204611247,97.2577167082771,91.4392516796081,130.494638392769,168.688378832693,0,0.176096868026452,0.621984346622316,0,1.2624243342638,0.888970520090367,0.763976851116555,1.17217447210047,10.2643467613623,2.87916979569306,7.50857644609794,4.0015700568281,38.0124375930773,23.5418437169971,26.9151508962887,7.23921608243556,0,0,11.4353390131494,5.2003718455683,1.54324424557285,0,3.46348832720929,1.28680194292333,29.8441882965294,11.5253647149308,0.977208552881205,0.355391948742546,7.12756685640086,1.20575750823834,0.871533458600294,1.19967589418468,0,0,2.10833939483032,5.27174682081482,1.14861935834114,22.8219048065149,1.59259437334337,1.2328579353023,4.47652408099739,0,0,0,0,2.28685161800217,1.30139853857622,0.773288812777695,3.51784157202132,0.637938751653163,0,0,0,0.24538298343828,1.50051156317903,0.542530047399471,2.9115920614313,11.062597305424,9.93525214713788,10.4255859343515,0.601892199455438,11.3703752027992,4.1389228517002,9.96338397803155,8.66535092146005,14.5964472306379,10.1816601880625,8.92172901908225,0,0,0,47.5910287170627,74.8959477797237,60.4780586659361,4.46594054073798,7.21271274453894,8.41980283299221,1.40953064181271,7.67560873600055,4.02134802859019,1.48418066444991,32.692455086163,49.0070361864231,35.8895671780346,15.5776328755086,42.1843673809652,14.0196961526282,96.6441186861833,167.679480852267,5.51109351190112,3.82391452814106,2.88473712910733,34.2911705809633,19.4078649503125,47.0609861506113,35.0734139167826,15.0938829316812,4.54933536283586,1.70093705276516,6.69339339916632,6.16909010761157,12.7344825645611,26.5895580143072,25.4876273045038,31.5808883392915,32.9095889441602,0,0,6.41125312790973,2.62411716559765,0.650756789328606,86.7605318073822,2.47237555009527,2.22775649785588,88.4368928514105,105.309759857916,3.21367859688319,8.21701105483037,1.54048617114644,2.14905144616581,2.48105830472155,1.28904293841928,1.16013355131383,6.56245031103977,5.16385806751077,72.7253627588304,66.8821434430569,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| ||
|short_description=p3@SDC1 | |short_description=p3@SDC1 | ||
}} | }} |
Latest revision as of 15:37, 19 September 2015
Short description: | p3@SDC1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_SDC1_5end |
Coexpression cluster: | C572_Urothelial_Prostate_Keratinocyte_Corneal_Mammary_Bronchial_Gingival |
Association with transcript: | -11bp_to_ENST00000254351_5end |
EntrezGene: | SDC1 |
HGNC: | 10658 |
UniProt: | P18827 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 5.96e-33 | 253 |
endodermal cell | 2.20e-18 | 58 |
embryonic cell | 6.95e-18 | 250 |
endo-epithelial cell | 7.56e-18 | 42 |
respiratory epithelial cell | 7.44e-09 | 13 |
epithelial cell of alimentary canal | 8.05e-08 | 20 |
ectodermal cell | 1.75e-07 | 72 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.35e-12 | 106 |
cell type cancer | 8.71e-11 | 143 |