FFCP PHASE1:Hg19::chrX:136648807..136648822,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(9 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7547 | |EntrezGene=7547 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12874 | |HGNC=12874 | ||
|TSSclassifier=strong | |||
|UniProt=Q5JY75 | |UniProt=Q5JY75 | ||
|association_with_transcript=130bp_to_ENST00000370606_5end | |association_with_transcript=130bp_to_ENST00000370606_5end | ||
|cluster_id=chrX:136648807..136648822,+ | |||
|coexpression_cluster_id=C595 | |||
|description=CAGE_peak_8_at_ZIC3_5end | |description=CAGE_peak_8_at_ZIC3_5end | ||
|id=chrX:136648807..136648822,+ | |id=chrX:136648807..136648822,+ | ||
|ontology_enrichment_celltype=CL:0002322!1.12e-21!5;CL:0000064!1.83e-13!3;CL:0005012!1.83e-13!3;CL:0000067!1.83e-13!3;CL:0002304!1.83e-13!3;CL:0000133!5.10e-10!59;CL:0000039!1.22e-09!7;CL:0000586!1.22e-09!7;CL:0002549!2.63e-09!2;CL:0000047!2.59e-08!8;CL:0000221!7.14e-08!71;CL:0000710!4.17e-07!20;CL:0000075!7.79e-07!27 | |ontology_enrichment_celltype=CL:0002322!1.12e-21!5;CL:0000064!1.83e-13!3;CL:0005012!1.83e-13!3;CL:0000067!1.83e-13!3;CL:0002304!1.83e-13!3;CL:0000133!5.10e-10!59;CL:0000039!1.22e-09!7;CL:0000586!1.22e-09!7;CL:0002549!2.63e-09!2;CL:0000047!2.59e-08!8;CL:0000221!7.14e-08!71;CL:0000710!4.17e-07!20;CL:0000075!7.79e-07!27 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.54e-62;5!CL:0002321;8.02e-21;15!CL:0000064;1.64e-17;3!CL:0000067;1.64e-17;3!CL:0005012;1.64e-17;3!CL:0002304;1.64e-17;3!CL:0000039;2.37e-16;7!CL:0000586;2.37e-16;7!CL:0000075;2.51e-16;27!CL:0000710;1.65e-15;20!CL:0000148;7.97e-12;10!CL:0002077;1.10e-08;34!CL:0000147;1.33e-08;14!CL:0002549;1.93e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,2.75e-62,5;CL:0000064,1.39e-17,3;CL:0000067,1.39e-17,3;CL:0005012,1.39e-17,3;CL:0002304,1.39e-17,3;CL:0000075,2.28e-16,27;CL:0000039,3.17e-16,7;CL:0000586,3.17e-16,7;CL:0000710,1.48e-15,20;CL:0000148,7.54e-12,10;CL:0000541,7.54e-12,10;CL:0002077,3.93e-09,34;CL:0000147,1.28e-08,14;CL:0002549,1.99e-07,2;CL:0000133,5.33e-07,59 | |||
|ontology_enrichment_development_v019=UBERON:0009117;4.29e-20;10!UBERON:0005564;4.29e-20;10 | |||
|ontology_enrichment_disease=DOID:3095!1.63e-13!22;DOID:2994!1.63e-13!22 | |||
|ontology_enrichment_disease_v019=DOID:3095;3.79e-14;22!DOID:2994;3.79e-14;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,4.41e-14,22;DOID:2994,4.41e-14,22 | |||
|ontology_enrichment_uberon=UBERON:0001017!5.01e-25!82;UBERON:0000073!1.13e-24!94;UBERON:0001016!1.13e-24!94;UBERON:0005743!1.33e-23!86;UBERON:0000955!5.95e-17!69;UBERON:0006238!5.95e-17!69;UBERON:0002616!1.65e-16!59;UBERON:0003075!2.30e-16!86;UBERON:0007284!2.30e-16!86;UBERON:0004121!7.02e-16!169;UBERON:0002346!2.05e-15!90;UBERON:0000924!2.38e-15!173;UBERON:0006601!2.38e-15!173;UBERON:0001778!1.83e-13!3;UBERON:0001775!1.83e-13!3;UBERON:0001049!3.74e-13!57;UBERON:0005068!3.74e-13!57;UBERON:0006241!3.74e-13!57;UBERON:0007135!3.74e-13!57;UBERON:0000033!2.66e-12!123;UBERON:0000153!1.75e-11!129;UBERON:0007811!1.75e-11!129;UBERON:0004733!5.10e-11!12;UBERON:0002028!5.10e-11!12;UBERON:0007277!5.10e-11!12;UBERON:0002680!1.14e-10!9;UBERON:0001895!1.14e-10!9;UBERON:0010092!1.14e-10!9;UBERON:0002308!1.97e-10!9;UBERON:0000125!1.97e-10!9;UBERON:0000488!3.32e-10!4;UBERON:0004732!4.00e-10!13;UBERON:0002200!2.21e-09!11;UBERON:0006876!2.21e-09!11;UBERON:0003056!2.44e-09!61;UBERON:0003947!2.63e-09!2;UBERON:0005629!2.63e-09!2;UBERON:0005358!2.63e-09!2;UBERON:0001886!2.63e-09!2;UBERON:0004086!2.63e-09!2;UBERON:0005282!2.63e-09!2;UBERON:0005281!2.63e-09!2;UBERON:0002020!5.08e-09!34;UBERON:0003528!5.08e-09!34;UBERON:0002360!8.16e-09!2;UBERON:0000094!8.16e-09!2;UBERON:0007645!8.16e-09!2;UBERON:0003076!1.08e-08!15;UBERON:0003057!1.08e-08!15;UBERON:0000473!1.94e-08!8;UBERON:0002148!2.35e-08!2;UBERON:0009662!2.35e-08!2;UBERON:0002791!1.48e-07!33;UBERON:0001893!2.69e-07!34;UBERON:0002780!3.09e-07!41;UBERON:0001890!3.09e-07!41;UBERON:0006240!3.09e-07!41;UBERON:0003080!5.01e-07!42;UBERON:0002203!6.33e-07!6;UBERON:0001768!6.33e-07!6 | |||
|ontology_enrichment_uberon_v019=UBERON:0001778;1.64e-17;3!UBERON:0001775;1.64e-17;3!UBERON:0000473;2.18e-14;8!UBERON:0000488;2.21e-13;4!UBERON:0000922;3.85e-11;49!UBERON:0007625;7.46e-11;11!UBERON:0006876;1.03e-10;11!UBERON:0003135;1.25e-10;11!UBERON:0000991;1.02e-09;21!UBERON:0002203;3.14e-09;6!UBERON:0001768;3.14e-09;6!UBERON:0002200;3.14e-09;6!UBERON:0001801;1.21e-08;14!UBERON:0005629;1.93e-07;2!UBERON:0005358;1.93e-07;2!UBERON:0001886;1.93e-07;2!UBERON:0004086;1.93e-07;2!UBERON:0005282;1.93e-07;2!UBERON:0005281;1.93e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001778,1.39e-17,3;UBERON:0001775,1.39e-17,3;UBERON:0000473,2.80e-14,8;UBERON:0000488,1.95e-13,4;UBERON:0007625,6.98e-11,11;UBERON:0006876,9.76e-11,11;UBERON:0003135,1.50e-10,11;UBERON:0000991,1.16e-09,21;UBERON:0009196,1.16e-09,21;UBERON:0009117,1.16e-09,21;UBERON:0005564,1.16e-09,21;UBERON:0002203,2.89e-09,6;UBERON:0001768,2.89e-09,6;UBERON:0002200,2.89e-09,6;UBERON:0004176,3.11e-09,22;UBERON:0001801,1.15e-08,14;UBERON:0005629,1.99e-07,2;UBERON:0005358,1.99e-07,2;UBERON:0001886,1.99e-07,2;UBERON:0004086,1.99e-07,2;UBERON:0005282,1.99e-07,2;UBERON:0005281,1.99e-07,2 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3633704291017,1.77383517970051,0.966182642624386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36221684880438,0.576175924479999,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,2.78312513475119,2.20768491452085,2.798848485415,1.7662459561294,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86907700895323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.331737779793674,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504143392443436,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0.0679914901909147,0,0,0,0,0,20.5651272481179,9.50610476084151,0.380095503034311,1.63182127587171,1.06886962106224,0.275684698604535,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.23121058076788,0,0.313454721478088,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.3633704291017,1.77383517970051,0.966182642624386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.36221684880438,0.576175924479999,0,0,0,0,0.117434498643765,0,0.140450806702248,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.29329006549908,2.78312513475119,2.20768491452085,2.798848485415,1.7662459561294,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.86907700895323,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112131084345361,0,0.2933531432838,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.76228387266739,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.185536196323703,1.99613798001194,0,0,0,0,0,0,0,0,0,0,0.241192877250816,0,0.331737779793674,0,0.438770794307945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.067401132980677,0,0.234264445725339,0,0,0,0,0,0.30607276163049,0.189559738885464,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.600420288709789,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.643012593860077,0.412618309791701,0.415440338029185,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.129282956361551,0.13223260174269,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.255788742607303,0,0.157265941855896,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.504143392443436,0.138314504928436,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206686796501184,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157115589916002,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.631086248772738,0.0679914901909147,0,0,0,0,0,20.5651272481179,9.50610476084151,0.380095503034311,1.63182127587171,1.06886962106224,0.275684698604535,1.0028301571695,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0 | ||
|short_description=p8@ZIC3 | |short_description=p8@ZIC3 | ||
}} | }} |
Latest revision as of 15:53, 19 September 2015
Short description: | p8@ZIC3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_ZIC3_5end |
Coexpression cluster: | C595_teratocarcinoma_HES3GFP_H9_testicular_Wilms_hepatoblastoma_neuroblastoma |
Association with transcript: | 130bp_to_ENST00000370606_5end |
EntrezGene: | ZIC3 |
HGNC: | 12874 |
UniProt: | Q5JY75 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 2.75e-62 | 5 |
ciliated cell | 1.39e-17 | 3 |
ciliated epithelial cell | 1.39e-17 | 3 |
multi-ciliated epithelial cell | 1.39e-17 | 3 |
non-pigmented ciliary epithelial cell | 1.39e-17 | 3 |
columnar/cuboidal epithelial cell | 2.28e-16 | 27 |
germ line cell | 3.17e-16 | 7 |
germ cell | 3.17e-16 | 7 |
neurecto-epithelial cell | 1.48e-15 | 20 |
melanocyte | 7.54e-12 | 10 |
melanoblast | 7.54e-12 | 10 |
ecto-epithelial cell | 3.93e-09 | 34 |
pigment cell | 1.28e-08 | 14 |
fibroblast of choroid plexus | 1.99e-07 | 2 |
neurectodermal cell | 5.33e-07 | 59 |
Ontology term | p-value | n |
---|---|---|
ciliary epithelium | 1.39e-17 | 3 |
ciliary body | 1.39e-17 | 3 |
testis | 2.80e-14 | 8 |
atypical epithelium | 1.95e-13 | 4 |
pigment epithelium of eye | 6.98e-11 | 11 |
vasculature of organ | 9.76e-11 | 11 |
male reproductive organ | 1.50e-10 | 11 |
gonad | 1.16e-09 | 21 |
indifferent external genitalia | 1.16e-09 | 21 |
indifferent gonad | 1.16e-09 | 21 |
gonad primordium | 1.16e-09 | 21 |
vasculature of eye | 2.89e-09 | 6 |
uvea | 2.89e-09 | 6 |
vasculature of head | 2.89e-09 | 6 |
external genitalia | 3.11e-09 | 22 |
anterior segment of eyeball | 1.15e-08 | 14 |
vascular plexus | 1.99e-07 | 2 |
ventricle of nervous system | 1.99e-07 | 2 |
choroid plexus | 1.99e-07 | 2 |
brain ventricle | 1.99e-07 | 2 |
ventricular system of brain | 1.99e-07 | 2 |
ventricular system of central nervous system | 1.99e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 4.41e-14 | 22 |
germ cell cancer | 4.41e-14 | 22 |