FFCP PHASE1:Hg19::chr12:65153175..65153229,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:65153175..65153229,- to FFCP PHASE1:Hg19::chr12:65153175..65153229,-: NSchange) |
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(9 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=2799 | |EntrezGene=2799 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4422 | |HGNC=4422 | ||
|TSSclassifier=strong | |||
|UniProt=P15586,B4DTT0,B4DYH8,F6S8M0,F5H260,Q7Z3X3 | |UniProt=P15586,B4DTT0,B4DYH8,F6S8M0,F5H260,Q7Z3X3 | ||
|association_with_transcript=0bp_to_ENST00000258145,ENST00000539825,ENST00000542058,ENST00000543646,ENST00000545471,NM_002076,uc001ssg.3,uc010ssq.1,uc010ssr.1_5end | |||
|cluster_id=chr12:65153175..65153229,- | |||
|description=CAGE_peak_1_at_GNS_5end | |||
|id=chr12:65153175..65153229,- | |||
|ontology_enrichment_celltype=CL:0000766!5.15e-19!76;CL:0002194!4.22e-16!63;CL:0000576!4.22e-16!63;CL:0000040!4.22e-16!63;CL:0000559!4.22e-16!63;CL:0000839!7.66e-15!70;CL:0002009!3.11e-14!65;CL:0000557!4.68e-14!71;CL:0002057!4.86e-13!42;CL:0000860!1.58e-11!45;CL:0000213!2.63e-10!57;CL:0000215!2.63e-10!57;CL:0000222!2.97e-10!119;CL:0002078!1.35e-09!44;CL:0000144!2.61e-09!625;CL:0002371!6.59e-09!591;CL:0000115!2.03e-08!35;CL:0000048!1.69e-07!430;CL:0000548!2.91e-07!679;CL:0000004!2.91e-07!679;CL:0000255!2.91e-07!679;CL:0002139!4.06e-07!24;CL:0000723!8.54e-07!436 | |||
|ontology_enrichment_celltype_v019=CL:0000473;1.01e-12;39!CL:0000234;1.01e-12;39!CL:0000860;4.14e-11;33!CL:0002057;4.14e-11;33!CL:0000766;7.77e-09;69!CL:0000576;8.77e-09;48!CL:0000115;6.81e-08;36!CL:0002078;1.19e-07;45!CL:0002139;4.19e-07;24!CL:0000136;4.73e-07;13 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,5.92e-20,72;CL:0002194,4.55e-17,59;CL:0000576,4.55e-17,59;CL:0000040,4.55e-17,59;CL:0000559,4.55e-17,59;CL:0000473,1.13e-16,48;CL:0000234,1.13e-16,48;CL:0000839,1.24e-15,66;CL:0002009,4.70e-15,61;CL:0000557,8.59e-15,67;CL:0000860,4.86e-13,42;CL:0002057,4.86e-13,42;CL:0000222,7.53e-11,121;CL:0000213,1.06e-10,58;CL:0000215,1.06e-10,58;CL:0002078,5.23e-10,45;CL:0000115,7.81e-09,36;CL:0000048,9.67e-08,427;CL:0002139,4.06e-07,24;CL:0000057,5.01e-07,76;CL:0000723,5.07e-07,433 | |||
|ontology_enrichment_development_v019=CL:0002057;6.90e-10;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!8.31e-19!448;UBERON:0004120!8.31e-19!448;UBERON:0006603!8.31e-19!448;UBERON:0003081!7.21e-15!216;UBERON:0000468!1.86e-14!659;UBERON:0002405!9.91e-14!115;UBERON:0002371!2.76e-13!80;UBERON:0002204!6.36e-13!167;UBERON:0001474!6.77e-13!86;UBERON:0000467!1.49e-12!625;UBERON:0000480!2.91e-12!626;UBERON:0004765!3.20e-12!101;UBERON:0001434!3.20e-12!101;UBERON:0002193!6.49e-10!112;UBERON:0000062!3.10e-08!511;UBERON:0002390!7.54e-08!102;UBERON:0003061!7.54e-08!102;UBERON:0002050!8.52e-08!605;UBERON:0005423!8.52e-08!605;UBERON:0000923!9.55e-08!604;UBERON:0005291!9.55e-08!604;UBERON:0006598!9.55e-08!604;UBERON:0002532!9.55e-08!604;UBERON:0001009!1.85e-07!113;UBERON:0000922!6.34e-07!612;UBERON:0004535!9.15e-07!110 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000926,2.82e-22,315;UBERON:0004120,2.82e-22,315;UBERON:0006603,2.82e-22,315;UBERON:0003081,4.00e-15,203;UBERON:0002204,3.10e-14,167;UBERON:0002371,6.78e-14,76;UBERON:0002405,7.05e-14,93;UBERON:0001434,1.75e-13,100;UBERON:0004765,1.83e-13,90;UBERON:0001474,1.93e-13,82;UBERON:0002193,3.19e-10,108;UBERON:0002390,4.10e-08,98;UBERON:0003061,4.10e-08,98;UBERON:0001009,3.79e-07,112 | |||
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| ||
|short_description=p1@GNS | |||
}} | }} |
Latest revision as of 21:41, 19 September 2015
Short description: | p1@GNS |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GNS_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000258145, ENST00000539825, ENST00000542058, ENST00000543646, ENST00000545471, NM_002076, uc001ssg.3, uc010ssq.1, uc010ssr.1_5end |
EntrezGene: | GNS |
HGNC: | 4422 |
UniProt: | P15586B4DTT0B4DYH8F6S8M0F5H260Q7Z3X3 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 5.92e-20 | 72 |
monopoietic cell | 4.55e-17 | 59 |
monocyte | 4.55e-17 | 59 |
monoblast | 4.55e-17 | 59 |
promonocyte | 4.55e-17 | 59 |
defensive cell | 1.13e-16 | 48 |
phagocyte | 1.13e-16 | 48 |
myeloid lineage restricted progenitor cell | 1.24e-15 | 66 |
macrophage dendritic cell progenitor | 4.70e-15 | 61 |
granulocyte monocyte progenitor cell | 8.59e-15 | 67 |
classical monocyte | 4.86e-13 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.86e-13 | 42 |
mesodermal cell | 7.53e-11 | 121 |
lining cell | 1.06e-10 | 58 |
barrier cell | 1.06e-10 | 58 |
meso-epithelial cell | 5.23e-10 | 45 |
endothelial cell | 7.81e-09 | 36 |
multi fate stem cell | 9.67e-08 | 427 |
endothelial cell of vascular tree | 4.06e-07 | 24 |
fibroblast | 5.01e-07 | 76 |
somatic stem cell | 5.07e-07 | 433 |
Ontology term | p-value | n |
---|---|---|
mesoderm | 2.82e-22 | 315 |
mesoderm-derived structure | 2.82e-22 | 315 |
presumptive mesoderm | 2.82e-22 | 315 |
lateral plate mesoderm | 4.00e-15 | 203 |
musculoskeletal system | 3.10e-14 | 167 |
bone marrow | 6.78e-14 | 76 |
immune system | 7.05e-14 | 93 |
skeletal system | 1.75e-13 | 100 |
skeletal element | 1.83e-13 | 90 |
bone element | 1.93e-13 | 82 |
hemolymphoid system | 3.19e-10 | 108 |
hematopoietic system | 4.10e-08 | 98 |
blood island | 4.10e-08 | 98 |
circulatory system | 3.79e-07 | 112 |