FFCP PHASE1:Hg19::chr9:104500922..104500940,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr9:104500922..104500940,- to FFCP PHASE1:Hg19::chr9:104500922..104500940,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=116443 | |EntrezGene=116443 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16767 | |HGNC=16767 | ||
|TSSclassifier=strong | |||
|UniProt=Q8TCU5 | |UniProt=Q8TCU5 | ||
|association_with_transcript=-60bp_to_ENST00000361820,NM_133445,uc004bbp.1,uc004bbq.1_5end | |||
|cluster_id=chr9:104500922..104500940,- | |||
|coexpression_cluster_id=C126 | |||
|description=CAGE_peak_1_at_GRIN3A_5end | |||
|id=chr9:104500922..104500940,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019=CL:0000123;8.07e-07;2!CL:0000242;8.07e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000242,8.55e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0006601;5.70e-19;82!UBERON:0006241;2.03e-09;3!UBERON:0003057;2.03e-09;3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.41e-59!57;UBERON:0005068!2.41e-59!57;UBERON:0006241!2.41e-59!57;UBERON:0007135!2.41e-59!57;UBERON:0005743!2.78e-56!86;UBERON:0007023!2.65e-55!115;UBERON:0000073!5.06e-55!94;UBERON:0001016!5.06e-55!94;UBERON:0001017!2.68e-53!82;UBERON:0003075!1.96e-50!86;UBERON:0007284!1.96e-50!86;UBERON:0002780!1.03e-49!41;UBERON:0001890!1.03e-49!41;UBERON:0006240!1.03e-49!41;UBERON:0000955!1.58e-49!69;UBERON:0006238!1.58e-49!69;UBERON:0001893!4.15e-49!34;UBERON:0002020!4.36e-49!34;UBERON:0003528!4.36e-49!34;UBERON:0002616!1.14e-48!59;UBERON:0003080!2.99e-48!42;UBERON:0002791!1.78e-47!33;UBERON:0002346!2.21e-47!90;UBERON:0001869!2.25e-46!32;UBERON:0002619!8.26e-39!22;UBERON:0003056!5.73e-37!61;UBERON:0000956!4.07e-36!25;UBERON:0000203!4.07e-36!25;UBERON:0001950!1.87e-35!20;UBERON:0004121!2.33e-32!169;UBERON:0000924!3.98e-31!173;UBERON:0006601!3.98e-31!173;UBERON:0000153!5.37e-31!129;UBERON:0007811!5.37e-31!129;UBERON:0000033!1.68e-29!123;UBERON:0002420!1.63e-14!9;UBERON:0007245!1.63e-14!9;UBERON:0010009!1.63e-14!9;UBERON:0010011!1.63e-14!9;UBERON:0000454!1.63e-14!9;UBERON:0001871!1.96e-14!7;UBERON:0002308!3.49e-14!9;UBERON:0000125!3.49e-14!9;UBERON:0000025!3.55e-14!194;UBERON:0000064!2.81e-13!219;UBERON:0004111!3.16e-12!241;UBERON:0003076!4.19e-12!15;UBERON:0003057!4.19e-12!15;UBERON:0000200!2.03e-11!6;UBERON:0009663!3.33e-11!7;UBERON:0000475!6.44e-11!365;UBERON:0002298!3.58e-10!8;UBERON:0000062!4.37e-10!511;UBERON:0001872!7.14e-10!5;UBERON:0000349!7.79e-10!5;UBERON:0000477!8.56e-10!286;UBERON:0000483!2.21e-09!309;UBERON:0002021!2.40e-09!5;UBERON:0004732!3.60e-09!13;UBERON:0000119!4.03e-09!312;UBERON:0004733!5.10e-08!12;UBERON:0002028!5.10e-08!12;UBERON:0007277!5.10e-08!12;UBERON:0000922!1.65e-07!612;UBERON:0000369!2.73e-07!4;UBERON:0002435!2.73e-07!4;UBERON:0000204!2.73e-07!4;UBERON:0010082!2.73e-07!4;UBERON:0002050!5.47e-07!605;UBERON:0005423!5.47e-07!605;UBERON:0000481!7.38e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001869;3.01e-64;32!UBERON:0002619;6.79e-63;22!UBERON:0001893;1.12e-61;34!UBERON:0003528;1.13e-61;34!UBERON:0002020;1.13e-61;34!UBERON:0002791;3.77e-60;32!UBERON:0001950;2.52e-57;20!UBERON:0000956;7.63e-55;25!UBERON:0000203;7.63e-55;25!UBERON:0002780;8.57e-51;41!UBERON:0001890;8.57e-51;41!UBERON:0000073;7.70e-41;53!UBERON:0002616;7.70e-41;53!UBERON:0001017;4.10e-30;75!UBERON:0000955;3.94e-28;68!UBERON:0001016;2.19e-24;83!UBERON:0001871;5.91e-20;6!UBERON:0002420;2.51e-18;9!UBERON:0007245;2.51e-18;9!UBERON:0010009;2.51e-18;9!UBERON:0010011;2.51e-18;9!UBERON:0000454;2.51e-18;9!UBERON:0000125;7.56e-18;9!UBERON:0002308;7.56e-18;9!UBERON:0000200;1.02e-17;6!UBERON:0002298;1.52e-16;6!UBERON:0001872;3.52e-15;5!UBERON:0000349;4.24e-15;5!UBERON:0002021;2.49e-14;5!UBERON:0009663;4.42e-13;7!UBERON:0007023;5.57e-13;114!UBERON:0000369;7.56e-11;4!UBERON:0002435;7.56e-11;4!UBERON:0000204;7.56e-11;4!UBERON:0011216;2.52e-10;132!UBERON:0001870;7.98e-10;3!UBERON:0004732;1.50e-09;13!UBERON:0002240;2.03e-09;3!UBERON:0005174;2.03e-09;3!UBERON:0001137;2.03e-09;3!UBERON:0000988;3.73e-09;3!UBERON:0001896;4.34e-09;3!UBERON:0005290;4.34e-09;3!UBERON:0005383;2.40e-08;3!UBERON:0005382;2.40e-08;3!UBERON:0010314;6.38e-08;132!UBERON:0004733;6.69e-08;12!UBERON:0002028;6.69e-08;12!UBERON:0001876;3.78e-07;2!UBERON:0001954;4.01e-07;2!UBERON:0002702;4.01e-07;2!UBERON:0003022;4.01e-07;2!UBERON:0002421;4.01e-07;2!UBERON:0002600;4.01e-07;2!UBERON:0002771;4.38e-07;2!UBERON:0000922;8.32e-07;49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001049,1.23e-82,56;UBERON:0005068,1.23e-82,56;UBERON:0006241,1.23e-82,56;UBERON:0007135,1.23e-82,56;UBERON:0000073,5.88e-75,53;UBERON:0002616,5.88e-75,53;UBERON:0001893,8.06e-72,34;UBERON:0003528,8.69e-72,34;UBERON:0002020,8.69e-72,34;UBERON:0001869,9.58e-72,32;UBERON:0002780,1.52e-70,41;UBERON:0001890,1.52e-70,41;UBERON:0003080,1.52e-70,41;UBERON:0006240,1.52e-70,41;UBERON:0002791,1.02e-66,32;UBERON:0000955,3.01e-65,68;UBERON:0006238,3.01e-65,68;UBERON:0001017,4.20e-65,81;UBERON:0003075,3.49e-64,82;UBERON:0007284,3.49e-64,82;UBERON:0002619,6.45e-63,22;UBERON:0001016,8.04e-63,89;UBERON:0002346,1.19e-60,86;UBERON:0001950,2.26e-57,20;UBERON:0010371,1.56e-55,104;UBERON:0000956,7.30e-55,25;UBERON:0000203,7.30e-55,25;UBERON:0003056,2.08e-50,61;UBERON:0007023,7.20e-45,114;UBERON:0010314,3.85e-39,132;UBERON:0004121,2.64e-36,171;UBERON:0000924,2.64e-36,171;UBERON:0006601,2.64e-36,171;UBERON:0011216,1.45e-23,223;UBERON:0000025,1.37e-21,192;UBERON:0001871,5.76e-20,6;UBERON:0002420,2.05e-18,9;UBERON:0007245,2.05e-18,9;UBERON:0010009,2.05e-18,9;UBERON:0010011,2.05e-18,9;UBERON:0000454,2.05e-18,9;UBERON:0000125,6.27e-18,9;UBERON:0002308,6.27e-18,9;UBERON:0000200,9.78e-18,6;UBERON:0002298,1.72e-16,6;UBERON:0004111,9.39e-16,240;UBERON:0001872,3.37e-15,5;UBERON:0000349,3.90e-15,5;UBERON:0000483,2.33e-14,306;UBERON:0002021,2.46e-14,5;UBERON:0000119,4.31e-14,309;UBERON:0003076,8.54e-14,15;UBERON:0003057,8.54e-14,15;UBERON:0009663,3.82e-13,7;UBERON:0000369,5.72e-11,4;UBERON:0002435,5.72e-11,4;UBERON:0000204,5.72e-11,4;UBERON:0010082,5.72e-11,4;UBERON:0001870,7.76e-10,3;UBERON:0004732,1.61e-09,13;UBERON:0002240,1.90e-09,3;UBERON:0005174,1.90e-09,3;UBERON:0001137,1.90e-09,3;UBERON:0000988,3.73e-09,3;UBERON:0001896,4.93e-09,3;UBERON:0005290,4.93e-09,3;UBERON:0010096,4.93e-09,3;UBERON:0005383,1.97e-08,3;UBERON:0005382,1.97e-08,3;UBERON:0004733,7.09e-08,12;UBERON:0002028,7.09e-08,12;UBERON:0007277,7.09e-08,12;UBERON:0002050,7.97e-08,564;UBERON:0000922,8.10e-08,592;UBERON:0000923,2.02e-07,560;UBERON:0010316,2.02e-07,560;UBERON:0005291,2.02e-07,560;UBERON:0006598,2.02e-07,560;UBERON:0010317,2.02e-07,560;UBERON:0002532,2.02e-07,560;UBERON:0001876,3.57e-07,2;UBERON:0005423,3.79e-07,581;UBERON:0002771,4.02e-07,2;UBERON:0002702,4.02e-07,2;UBERON:0001954,4.26e-07,2;UBERON:0003022,4.26e-07,2;UBERON:0002421,4.26e-07,2;UBERON:0002600,4.26e-07,2 | |||
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| ||
|short_description=p1@GRIN3A | |||
}} | }} |
Latest revision as of 22:17, 19 September 2015
Short description: | p1@GRIN3A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_GRIN3A_5end |
Coexpression cluster: | C126_gastrointestinal_argyrophil_smallcell_merkel_bile_insula_brain |
Association with transcript: | -60bp_to_ENST00000361820, NM_133445, uc004bbp.1, uc004bbq.1_5end |
EntrezGene: | GRIN3A |
HGNC: | 16767 |
UniProt: | Q8TCU5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
Merkel cell | 8.55e-07 | 2 |