FFCP PHASE1:Hg19::chr3:98451125..98451140,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=10402 | |EntrezGene=10402 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=18080 | |HGNC=18080 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-11bp_to_uc003dsy.2,uc003dsz.2,uc003dta.2,uc003dtb.2_5end | |association_with_transcript=-11bp_to_uc003dsy.2,uc003dsz.2,uc003dta.2,uc003dtb.2_5end | ||
|cluster_id=chr3:98451125..98451140,+ | |||
|description=CAGE_peak_4_at_ST3GAL6_5end | |description=CAGE_peak_4_at_ST3GAL6_5end | ||
|id=chr3:98451125..98451140,+ | |id=chr3:98451125..98451140,+ | ||
|ontology_enrichment_celltype=CL:0000557!6.10e-19!71;CL:0002009!6.91e-18!65;CL:0000839!7.19e-17!70;CL:0002194!7.72e-17!63;CL:0000576!7.72e-17!63;CL:0000040!7.72e-17!63;CL:0000559!7.72e-17!63;CL:0000766!1.31e-14!76;CL:0002057!4.75e-14!42;CL:0000860!4.19e-12!45;CL:0000763!8.91e-08!112;CL:0000049!8.91e-08!112 | |ontology_enrichment_celltype=CL:0000557!6.10e-19!71;CL:0002009!6.91e-18!65;CL:0000839!7.19e-17!70;CL:0002194!7.72e-17!63;CL:0000576!7.72e-17!63;CL:0000040!7.72e-17!63;CL:0000559!7.72e-17!63;CL:0000766!1.31e-14!76;CL:0002057!4.75e-14!42;CL:0000860!4.19e-12!45;CL:0000763!8.91e-08!112;CL:0000049!8.91e-08!112 | ||
|ontology_enrichment_celltype_v019=CL:0000860;7.05e-20;33!CL:0002057;7.05e-20;33!CL:0000473;6.76e-19;39!CL:0000234;6.76e-19;39!CL:0000576;3.01e-12;48!CL:0000766;1.15e-08;69!CL:0000990;2.87e-07;8 | |ontology_enrichment_celltype_v019=CL:0000860;7.05e-20;33!CL:0002057;7.05e-20;33!CL:0000473;6.76e-19;39!CL:0000234;6.76e-19;39!CL:0000576;3.01e-12;48!CL:0000766;1.15e-08;69!CL:0000990;2.87e-07;8 | ||
|ontology_enrichment_celltype_v019_2=CL:0000557,4.94e-24,67;CL:0002009,6.23e-23,61;CL:0000473,5.75e-22,48;CL:0000234,5.75e-22,48;CL:0002194,2.15e-21,59;CL:0000576,2.15e-21,59;CL:0000040,2.15e-21,59;CL:0000559,2.15e-21,59;CL:0000839,1.01e-20,66;CL:0000860,1.18e-18,42;CL:0002057,1.18e-18,42;CL:0000766,1.29e-17,72;CL:0000763,4.37e-12,108;CL:0000049,4.37e-12,108;CL:0002031,1.08e-09,120;CL:0000738,4.50e-09,136;CL:0002087,8.37e-08,115;CL:0000990,2.88e-07,8 | |||
|ontology_enrichment_development_v019=CL:0002057;5.00e-14;42 | |ontology_enrichment_development_v019=CL:0002057;5.00e-14;42 | ||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |ontology_enrichment_disease_v019= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002405!1.88e-19!115;UBERON:0007023!5.08e-17!115;UBERON:0002193!2.43e-16!112;UBERON:0002371!5.44e-16!80;UBERON:0002390!3.42e-15!102;UBERON:0003061!3.42e-15!102;UBERON:0001474!1.80e-14!86;UBERON:0003081!5.94e-13!216;UBERON:0004765!3.78e-11!101;UBERON:0001434!3.78e-11!101;UBERON:0001049!7.15e-11!57;UBERON:0005068!7.15e-11!57;UBERON:0006241!7.15e-11!57;UBERON:0007135!7.15e-11!57;UBERON:0000073!1.67e-10!94;UBERON:0001016!1.67e-10!94;UBERON:0005743!4.95e-10!86;UBERON:0000468!1.51e-09!659;UBERON:0001017!4.18e-09!82;UBERON:0000922!5.37e-09!612;UBERON:0000480!7.32e-09!626;UBERON:0000467!9.20e-09!625;UBERON:0002616!1.15e-08!59;UBERON:0000923!1.68e-08!604;UBERON:0005291!1.68e-08!604;UBERON:0006598!1.68e-08!604;UBERON:0002532!1.68e-08!604;UBERON:0000025!2.02e-08!194;UBERON:0002050!2.52e-08!605;UBERON:0005423!2.52e-08!605;UBERON:0003075!1.36e-07!86;UBERON:0007284!1.36e-07!86;UBERON:0003080!1.66e-07!42;UBERON:0002780!1.96e-07!41;UBERON:0001890!1.96e-07!41;UBERON:0006240!1.96e-07!41;UBERON:0002346!2.22e-07!90;UBERON:0000955!2.43e-07!69;UBERON:0006238!2.43e-07!69;UBERON:0004111!5.83e-07!241;UBERON:0000062!7.23e-07!511 | |ontology_enrichment_uberon=UBERON:0002405!1.88e-19!115;UBERON:0007023!5.08e-17!115;UBERON:0002193!2.43e-16!112;UBERON:0002371!5.44e-16!80;UBERON:0002390!3.42e-15!102;UBERON:0003061!3.42e-15!102;UBERON:0001474!1.80e-14!86;UBERON:0003081!5.94e-13!216;UBERON:0004765!3.78e-11!101;UBERON:0001434!3.78e-11!101;UBERON:0001049!7.15e-11!57;UBERON:0005068!7.15e-11!57;UBERON:0006241!7.15e-11!57;UBERON:0007135!7.15e-11!57;UBERON:0000073!1.67e-10!94;UBERON:0001016!1.67e-10!94;UBERON:0005743!4.95e-10!86;UBERON:0000468!1.51e-09!659;UBERON:0001017!4.18e-09!82;UBERON:0000922!5.37e-09!612;UBERON:0000480!7.32e-09!626;UBERON:0000467!9.20e-09!625;UBERON:0002616!1.15e-08!59;UBERON:0000923!1.68e-08!604;UBERON:0005291!1.68e-08!604;UBERON:0006598!1.68e-08!604;UBERON:0002532!1.68e-08!604;UBERON:0000025!2.02e-08!194;UBERON:0002050!2.52e-08!605;UBERON:0005423!2.52e-08!605;UBERON:0003075!1.36e-07!86;UBERON:0007284!1.36e-07!86;UBERON:0003080!1.66e-07!42;UBERON:0002780!1.96e-07!41;UBERON:0001890!1.96e-07!41;UBERON:0006240!1.96e-07!41;UBERON:0002346!2.22e-07!90;UBERON:0000955!2.43e-07!69;UBERON:0006238!2.43e-07!69;UBERON:0004111!5.83e-07!241;UBERON:0000062!7.23e-07!511 | ||
|ontology_enrichment_uberon_v019= | |ontology_enrichment_uberon_v019= | ||
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| ||
|short_description=p4@ST3GAL6 | |short_description=p4@ST3GAL6 | ||
}} | }} |
Latest revision as of 22:23, 19 September 2015
Short description: | p4@ST3GAL6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_ST3GAL6_5end |
Coexpression cluster: | NA |
Association with transcript: | -11bp_to_uc003dsy.2, uc003dsz.2, uc003dta.2, uc003dtb.2_5end |
EntrezGene: | ST3GAL6 |
HGNC: | 18080 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
granulocyte monocyte progenitor cell | 4.94e-24 | 67 |
macrophage dendritic cell progenitor | 6.23e-23 | 61 |
defensive cell | 5.75e-22 | 48 |
phagocyte | 5.75e-22 | 48 |
monopoietic cell | 2.15e-21 | 59 |
monocyte | 2.15e-21 | 59 |
monoblast | 2.15e-21 | 59 |
promonocyte | 2.15e-21 | 59 |
myeloid lineage restricted progenitor cell | 1.01e-20 | 66 |
classical monocyte | 1.18e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.18e-18 | 42 |
myeloid leukocyte | 1.29e-17 | 72 |
myeloid cell | 4.37e-12 | 108 |
common myeloid progenitor | 4.37e-12 | 108 |
hematopoietic lineage restricted progenitor cell | 1.08e-09 | 120 |
leukocyte | 4.50e-09 | 136 |
nongranular leukocyte | 8.37e-08 | 115 |
conventional dendritic cell | 2.88e-07 | 8 |
Ontology term | p-value | n |
---|---|---|
immune system | 7.69e-21 | 93 |
bone marrow | 1.10e-20 | 76 |
bone element | 8.98e-19 | 82 |
hemolymphoid system | 2.10e-17 | 108 |
hematopoietic system | 2.56e-17 | 98 |
blood island | 2.56e-17 | 98 |
skeletal element | 2.49e-16 | 90 |
skeletal system | 1.40e-13 | 100 |
lateral plate mesoderm | 1.45e-11 | 203 |
neural tube | 3.11e-11 | 56 |
neural rod | 3.11e-11 | 56 |
future spinal cord | 3.11e-11 | 56 |
neural keel | 3.11e-11 | 56 |
neural plate | 5.01e-10 | 82 |
presumptive neural plate | 5.01e-10 | 82 |
regional part of nervous system | 1.09e-09 | 53 |
regional part of brain | 1.09e-09 | 53 |
neurectoderm | 1.87e-09 | 86 |
adult organism | 2.04e-09 | 114 |
nervous system | 6.46e-09 | 89 |
central nervous system | 1.36e-07 | 81 |
ecto-epithelium | 5.53e-07 | 104 |
posterior neural tube | 7.53e-07 | 15 |
chordal neural plate | 7.53e-07 | 15 |
structure with developmental contribution from neural crest | 8.01e-07 | 132 |